메뉴 건너뛰기




Volumn 6, Issue , 2011, Pages 47-57

Metagenomics for Bioremediation

Author keywords

Biodegradation; Library functional screening; Library genetic screening; Metagenomics; Pollutants; Pyrosequencing

Indexed keywords


EID: 85012821753     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-0-08-088504-9.00364-0     Document Type: Chapter
Times cited : (2)

References (81)
  • 1
    • 2142763872 scopus 로고    scopus 로고
    • Cleaning up with genomics: Applying molecular biology to bioremediation
    • Lovley D.R. Cleaning up with genomics: Applying molecular biology to bioremediation. Nature Reviews. Microbiology 2003, 1:35-44.
    • (2003) Nature Reviews. Microbiology , vol.1 , pp. 35-44
    • Lovley, D.R.1
  • 3
    • 0028183819 scopus 로고
    • Effectiveness of bioremediation for the Exxon Valdez oil spill
    • Bragg J.R., Prince R.C., Harner E.J., Atlas R.M. Effectiveness of bioremediation for the Exxon Valdez oil spill. Nature 1994, 368:413-418.
    • (1994) Nature , vol.368 , pp. 413-418
    • Bragg, J.R.1    Prince, R.C.2    Harner, E.J.3    Atlas, R.M.4
  • 4
    • 20444439954 scopus 로고    scopus 로고
    • Is bioaugmentation a feasible strategy for pollutant removal and site remediation?
    • El Fantroussi S., Agathos S.N. Is bioaugmentation a feasible strategy for pollutant removal and site remediation?. Current Opinion in Microbiology 2005, 8:268-275.
    • (2005) Current Opinion in Microbiology , vol.8 , pp. 268-275
    • El Fantroussi, S.1    Agathos, S.N.2
  • 5
    • 0242507740 scopus 로고    scopus 로고
    • Scaling up: The next challenge in environmental microbiology
    • Paerl H.W., Steppe T.F. Scaling up: The next challenge in environmental microbiology. Environmental Microbiology 2003, 5:1025-1038.
    • (2003) Environmental Microbiology , vol.5 , pp. 1025-1038
    • Paerl, H.W.1    Steppe, T.F.2
  • 7
    • 11244319620 scopus 로고    scopus 로고
    • Environmental genomics: Exploring the unmined richness of microbes to degrade xenobiotics
    • Eyers L., George I., Schuler L., et al. Environmental genomics: Exploring the unmined richness of microbes to degrade xenobiotics. Applied Microbiology and Biotechnology 2004, 66:123-130.
    • (2004) Applied Microbiology and Biotechnology , vol.66 , pp. 123-130
    • Eyers, L.1    George, I.2    Schuler, L.3
  • 8
    • 53949095625 scopus 로고    scopus 로고
    • The metagenomics of disease-suppressive soils - experiences from the metacontrol project
    • van Elsas J.D., Costa R., Jansson J., et al. The metagenomics of disease-suppressive soils - experiences from the metacontrol project. Trends in Biotechnology 2008, 26:591-601.
    • (2008) Trends in Biotechnology , vol.26 , pp. 591-601
    • van Elsas, J.D.1    Costa, R.2    Jansson, J.3
  • 9
    • 19444385451 scopus 로고    scopus 로고
    • Metagenomic gene discovery: Past, present and future
    • Cowan D., Meyer Q., Stafford W., et al. Metagenomic gene discovery: Past, present and future. Trends in Biotechnology 2005, 23:321-329.
    • (2005) Trends in Biotechnology , vol.23 , pp. 321-329
    • Cowan, D.1    Meyer, Q.2    Stafford, W.3
  • 11
    • 84975729180 scopus 로고    scopus 로고
    • NRC Committee on Metagenomics: Challenges and Functional Applications, The National Academies, Washington, DC
    • The New Science of Metagenomics: Revealing the Secrets of Our Microbial Planet 2007, NRC Committee on Metagenomics: Challenges and Functional Applications, The National Academies, Washington, DC. http://www.nap.edu/catalog.php%3Frecord_id%3D11902.
    • (2007) The New Science of Metagenomics: Revealing the Secrets of Our Microbial Planet
  • 13
    • 0036276905 scopus 로고    scopus 로고
    • Polychlorinated biphenyl-degrading microbial communities in soils and sediments
    • Abraham W.R., Nogales B., Golyshin P.N., et al. Polychlorinated biphenyl-degrading microbial communities in soils and sediments. Current Opinion in Microbiology 2002, 5:246-253.
    • (2002) Current Opinion in Microbiology , vol.5 , pp. 246-253
    • Abraham, W.R.1    Nogales, B.2    Golyshin, P.N.3
  • 14
    • 33646099162 scopus 로고    scopus 로고
    • Development and characterization of stable sediment-free anaerobic bacterial enrichment cultures that dechlorinate Aroclor 1260
    • Bedard D.L., Bailey J.J., Reiss B.L., Jerzak G.V. Development and characterization of stable sediment-free anaerobic bacterial enrichment cultures that dechlorinate Aroclor 1260. Applied and Environmental Microbiology 2006, 72:2460-2470.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 2460-2470
    • Bedard, D.L.1    Bailey, J.J.2    Reiss, B.L.3    Jerzak, G.V.4
  • 15
    • 0037336952 scopus 로고    scopus 로고
    • Synergistic degradation of linuron by a bacterial consortium and isolation of a single linuron-degrading Variovorax strain
    • Dejonghe W., Berteloot E., Goris J., et al. Synergistic degradation of linuron by a bacterial consortium and isolation of a single linuron-degrading Variovorax strain. Applied and Environmental Microbiology 2003, 69:1532-1541.
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 1532-1541
    • Dejonghe, W.1    Berteloot, E.2    Goris, J.3
  • 16
    • 0034469149 scopus 로고    scopus 로고
    • Enrichment and molecular characterization of a bacterial culture that degrades methoxy-methyl urea herbicides and their aniline derivatives
    • El Fantroussi S., Verstraete W., Top E.M. Enrichment and molecular characterization of a bacterial culture that degrades methoxy-methyl urea herbicides and their aniline derivatives. Applied and Environmental Microbiology 2000, 66:5110-5115.
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 5110-5115
    • El Fantroussi, S.1    Verstraete, W.2    Top, E.M.3
  • 17
    • 0025853357 scopus 로고
    • Mineralization of linear alkylbenzene sulfonate by a four-member aerobic bacterial consortium
    • Jimenez L., Breen A., Thomas N., et al. Mineralization of linear alkylbenzene sulfonate by a four-member aerobic bacterial consortium. Applied and Environmental Microbiology 1991, 57:1566-1569.
    • (1991) Applied and Environmental Microbiology , vol.57 , pp. 1566-1569
    • Jimenez, L.1    Breen, A.2    Thomas, N.3
  • 20
    • 0038273910 scopus 로고    scopus 로고
    • Microbial consortia that degrade 2,4-DNT by interspecies metabolism: Isolation and characterisation
    • Snellinx Z., Taghavi S., Vangronsveld J., van der Lelie D. Microbial consortia that degrade 2,4-DNT by interspecies metabolism: Isolation and characterisation. Biodegradation 2003, 14:19-29.
    • (2003) Biodegradation , vol.14 , pp. 19-29
    • Snellinx, Z.1    Taghavi, S.2    Vangronsveld, J.3    van der Lelie, D.4
  • 21
    • 0036307720 scopus 로고    scopus 로고
    • Growth in coculture stimulates metabolism of the phenylurea herbicide isoproturon by Sphingomonas sp. strain SRS2
    • Sorensen S.R., Ronen Z., Aamand J. Growth in coculture stimulates metabolism of the phenylurea herbicide isoproturon by Sphingomonas sp. strain SRS2. Applied and Environmental Microbiology 2002, 68:3478-3485.
    • (2002) Applied and Environmental Microbiology , vol.68 , pp. 3478-3485
    • Sorensen, S.R.1    Ronen, Z.2    Aamand, J.3
  • 22
    • 33646480880 scopus 로고    scopus 로고
    • The selection of mixed microbial inocula in environmental biotechnology: Example using petroleum contaminated tropical soils
    • Supaphol S., Panichsakpatana S., Trakulnaleamsai S., et al. The selection of mixed microbial inocula in environmental biotechnology: Example using petroleum contaminated tropical soils. Journal of Microbiological Methods 2006, 65:432-441.
    • (2006) Journal of Microbiological Methods , vol.65 , pp. 432-441
    • Supaphol, S.1    Panichsakpatana, S.2    Trakulnaleamsai, S.3
  • 23
    • 0037297033 scopus 로고    scopus 로고
    • Physiological and molecular characterization of anaerobic benzene-degrading mixed cultures
    • Ulrich A.C., Edwards E.A. Physiological and molecular characterization of anaerobic benzene-degrading mixed cultures. Environmental Microbiology 2003, 5:92-102.
    • (2003) Environmental Microbiology , vol.5 , pp. 92-102
    • Ulrich, A.C.1    Edwards, E.A.2
  • 24
    • 0034437861 scopus 로고    scopus 로고
    • Microbial consortia involved in the anaerobic degradation of hydrocarbons
    • Zwolinski M.D., Harris R.F., Hickey W.J. Microbial consortia involved in the anaerobic degradation of hydrocarbons. Biodegradation 2000, 11:141-158.
    • (2000) Biodegradation , vol.11 , pp. 141-158
    • Zwolinski, M.D.1    Harris, R.F.2    Hickey, W.J.3
  • 25
    • 0034984682 scopus 로고    scopus 로고
    • Cleaning up behind us. The potential of genetically modified bacteria to break down toxic pollutants in the environment
    • de Lorenzo V. Cleaning up behind us. The potential of genetically modified bacteria to break down toxic pollutants in the environment. EMBO Reports 2001, 2:357-359.
    • (2001) EMBO Reports , vol.2 , pp. 357-359
    • de Lorenzo, V.1
  • 26
    • 57049185721 scopus 로고    scopus 로고
    • Molecular approaches in bioremediation
    • Wood T.K. Molecular approaches in bioremediation. Current Opinion in Biotechnology 2008, 19:572-578.
    • (2008) Current Opinion in Biotechnology , vol.19 , pp. 572-578
    • Wood, T.K.1
  • 27
    • 85012854705 scopus 로고    scopus 로고
    • Application of metagenomics to bioremediation
    • Caister Academic Press, Norfolk, UK, D. Marco (Ed.)
    • George I., Stenuit B., Agathos S.N. Application of metagenomics to bioremediation. Metagenomics: Theory, Methods and Applications 2010, 119-140. Caister Academic Press, Norfolk, UK. D. Marco (Ed.).
    • (2010) Metagenomics: Theory, Methods and Applications , pp. 119-140
    • George, I.1    Stenuit, B.2    Agathos, S.N.3
  • 28
    • 33748543962 scopus 로고    scopus 로고
    • Extraction of inhibitor-free metagenomic DNA from polluted sediments, compatible with molecular diversity analysis using adsorption and ion-exchange treatments
    • Desai C., Madamwar D. Extraction of inhibitor-free metagenomic DNA from polluted sediments, compatible with molecular diversity analysis using adsorption and ion-exchange treatments. Bioresource Technology 2007, 98:761-768.
    • (2007) Bioresource Technology , vol.98 , pp. 761-768
    • Desai, C.1    Madamwar, D.2
  • 29
    • 1642523441 scopus 로고    scopus 로고
    • Soil washing improves the recovery of total community DNA from polluted and high organic content sediments
    • Fortin N., Beaumier D., Lee K., Greer C.W. Soil washing improves the recovery of total community DNA from polluted and high organic content sediments. Journal of Microbiological Methods 2004, 56:181-191.
    • (2004) Journal of Microbiological Methods , vol.56 , pp. 181-191
    • Fortin, N.1    Beaumier, D.2    Lee, K.3    Greer, C.W.4
  • 30
    • 44249127260 scopus 로고    scopus 로고
    • Recovery, purification, and cloning of high-molecular-weight DNA from soil microorganisms
    • Liles M.R., Williamson L.L., Rodbumrer J., et al. Recovery, purification, and cloning of high-molecular-weight DNA from soil microorganisms. Applied and Environmental Microbiology 2008, 74:3302-3305.
    • (2008) Applied and Environmental Microbiology , vol.74 , pp. 3302-3305
    • Liles, M.R.1    Williamson, L.L.2    Rodbumrer, J.3
  • 31
    • 33646559836 scopus 로고    scopus 로고
    • Environmental whole-genome amplification to access microbial populations in contaminated sediments
    • Abulencia C.B., Wyborski D.L., Garcia J.A., et al. Environmental whole-genome amplification to access microbial populations in contaminated sediments. Applied and Environmental Microbiology 2006, 72:3291-3301.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 3291-3301
    • Abulencia, C.B.1    Wyborski, D.L.2    Garcia, J.A.3
  • 32
    • 40249095175 scopus 로고    scopus 로고
    • Something from (almost) nothing: The impact of multiple displacement amplification on microbial ecology
    • Binga E.K., Lasken R.S., Neufeld J.D. Something from (almost) nothing: The impact of multiple displacement amplification on microbial ecology. ISME Journal 2008, 2:233-241.
    • (2008) ISME Journal , vol.2 , pp. 233-241
    • Binga, E.K.1    Lasken, R.S.2    Neufeld, J.D.3
  • 34
    • 34547748431 scopus 로고    scopus 로고
    • Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds
    • Suenaga H., Ohnuki T., Miyazaki K. Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds. Environmental Microbiology 2007, 9:2289-2297.
    • (2007) Environmental Microbiology , vol.9 , pp. 2289-2297
    • Suenaga, H.1    Ohnuki, T.2    Miyazaki, K.3
  • 35
    • 33846796432 scopus 로고    scopus 로고
    • Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches
    • Ono A., Miyazaki R., Sota M., et al. Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches. Applied Microbiology and Biotechnology 2007, 74:501-510.
    • (2007) Applied Microbiology and Biotechnology , vol.74 , pp. 501-510
    • Ono, A.1    Miyazaki, R.2    Sota, M.3
  • 37
    • 19144366814 scopus 로고    scopus 로고
    • Metagenomics and industrial applications
    • Lorenz P., Eck J. Metagenomics and industrial applications. Nature Reviews. Microbiology 2005, 3:510-516.
    • (2005) Nature Reviews. Microbiology , vol.3 , pp. 510-516
    • Lorenz, P.1    Eck, J.2
  • 38
    • 77955685224 scopus 로고    scopus 로고
    • Screening for hydrocarbon biodegraders in a metagenomic clone library derived from Brazilian petroleum reservoirs
    • de Vasconcellos S., Angolini C.F., García I.N., et al. Screening for hydrocarbon biodegraders in a metagenomic clone library derived from Brazilian petroleum reservoirs. Organic Geochemistry 2010, 41:675-681.
    • (2010) Organic Geochemistry , vol.41 , pp. 675-681
    • de Vasconcellos, S.1    Angolini, C.F.2    García, I.N.3
  • 39
    • 0034016917 scopus 로고    scopus 로고
    • Isolation of adherent polycyclic aromatic hydrocarbon (PAH)-degrading bacteria using PAH-sorbing carriers
    • Bastiaens L., Springael D., Wattiau P., et al. Isolation of adherent polycyclic aromatic hydrocarbon (PAH)-degrading bacteria using PAH-sorbing carriers. Applied and Environmental Microbiology 2000, 66:1834-1843.
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 1834-1843
    • Bastiaens, L.1    Springael, D.2    Wattiau, P.3
  • 40
    • 0036001073 scopus 로고    scopus 로고
    • Enrichment versus biofilm culture: A functional and phylogenetic comparison of polycyclic aromatic hydrocarbon-degrading microbial communities
    • Stach J.E., Burns R.G. Enrichment versus biofilm culture: A functional and phylogenetic comparison of polycyclic aromatic hydrocarbon-degrading microbial communities. Environmental Microbiology 2002, 4:169-182.
    • (2002) Environmental Microbiology , vol.4 , pp. 169-182
    • Stach, J.E.1    Burns, R.G.2
  • 41
    • 77950859287 scopus 로고    scopus 로고
    • When metagenomics meets stable-isotope probing: Progress and perspectives
    • Chen Y., Murrell J.C. When metagenomics meets stable-isotope probing: Progress and perspectives. Trends in Microbiology 2010, 18:157-163.
    • (2010) Trends in Microbiology , vol.18 , pp. 157-163
    • Chen, Y.1    Murrell, J.C.2
  • 42
    • 34249948237 scopus 로고    scopus 로고
    • Who eats what, where and when? Isotope-labelling experiments are coming of age
    • Neufeld J.D., Wagner M., Murrell J.C. Who eats what, where and when? Isotope-labelling experiments are coming of age. ISME Journal 2007, 1:103-110.
    • (2007) ISME Journal , vol.1 , pp. 103-110
    • Neufeld, J.D.1    Wagner, M.2    Murrell, J.C.3
  • 43
    • 69449083604 scopus 로고    scopus 로고
    • DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment
    • Sul W.J., Park J., Quensen J.F., et al. DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment. Applied and Environmental Microbiology 2009, 75:5501-5506.
    • (2009) Applied and Environmental Microbiology , vol.75 , pp. 5501-5506
    • Sul, W.J.1    Park, J.2    Quensen, J.F.3
  • 44
    • 4344598273 scopus 로고    scopus 로고
    • Quantifying the accessibility of the metagenome by random expression cloning techniques
    • Gabor E.M., Alkema W.B., Janssen D.B. Quantifying the accessibility of the metagenome by random expression cloning techniques. Environmental Microbiology 2004, 6:879-886.
    • (2004) Environmental Microbiology , vol.6 , pp. 879-886
    • Gabor, E.M.1    Alkema, W.B.2    Janssen, D.B.3
  • 45
    • 77649206077 scopus 로고    scopus 로고
    • Expanding small-molecule functional metagenomics through parallel screening of broad-host-range cosmid environmental DNA libraries in diverse proteobacteria
    • Craig J.W., Chang F.Y., Kim J.H., et al. Expanding small-molecule functional metagenomics through parallel screening of broad-host-range cosmid environmental DNA libraries in diverse proteobacteria. Applied and Environmental Microbiology 2010, 76:1633-1641.
    • (2010) Applied and Environmental Microbiology , vol.76 , pp. 1633-1641
    • Craig, J.W.1    Chang, F.Y.2    Kim, J.H.3
  • 46
    • 13944259584 scopus 로고    scopus 로고
    • Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts
    • Martinez A., Kolvek S.J., Yip S.J., et al. Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts. Applied and Environmental Microbiology 2004, 70:2452-2463.
    • (2004) Applied and Environmental Microbiology , vol.70 , pp. 2452-2463
    • Martinez, A.1    Kolvek, S.J.2    Yip, S.J.3
  • 47
    • 28644431563 scopus 로고    scopus 로고
    • A wide host-range metagenomic library from a waste water treatment plant yields a novel alcohol/aldehyde dehydrogenase
    • Wexler M., Bond P.L., Richardson D.J., Johnston A.W. A wide host-range metagenomic library from a waste water treatment plant yields a novel alcohol/aldehyde dehydrogenase. Environmental Microbiology 2005, 7:1917-1926.
    • (2005) Environmental Microbiology , vol.7 , pp. 1917-1926
    • Wexler, M.1    Bond, P.L.2    Richardson, D.J.3    Johnston, A.W.4
  • 48
    • 26844491940 scopus 로고    scopus 로고
    • Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor
    • Williamson L.L., Borlee B.R., Schloss P.D., et al. Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor. Applied and Environmental Microbiology 2005, 71:6335-6344.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 6335-6344
    • Williamson, L.L.1    Borlee, B.R.2    Schloss, P.D.3
  • 49
    • 19144369096 scopus 로고    scopus 로고
    • Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes
    • Uchiyama T., Abe T., Ikemura T., Watanabe K. Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes. Nature Biotechnology 2005, 23:88-93.
    • (2005) Nature Biotechnology , vol.23 , pp. 88-93
    • Uchiyama, T.1    Abe, T.2    Ikemura, T.3    Watanabe, K.4
  • 50
    • 85012842779 scopus 로고    scopus 로고
    • Problems with metagenomic screening
    • author reply 1045-1046
    • de Lorenzo V. Problems with metagenomic screening. Nature Biotechnology 2005, 23:1045. author reply 1045-1046.
    • (2005) Nature Biotechnology , vol.23 , pp. 1045
    • de Lorenzo, V.1
  • 51
    • 33644956913 scopus 로고    scopus 로고
    • Surveying biotransformations with a la carte genetic traps: Translating dehydrochlorination of lindane (gamma-hexachlorocyclohexane) into lacZ-based phenotypes
    • Mohn W.W., Garmendia J., Galvao T.C., de Lorenzo V. Surveying biotransformations with a la carte genetic traps: Translating dehydrochlorination of lindane (gamma-hexachlorocyclohexane) into lacZ-based phenotypes. Environmental Microbiology 2006, 8:546-555.
    • (2006) Environmental Microbiology , vol.8 , pp. 546-555
    • Mohn, W.W.1    Garmendia, J.2    Galvao, T.C.3    de Lorenzo, V.4
  • 52
    • 23744472955 scopus 로고    scopus 로고
    • Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta
    • Schirmer A., Gadkari R., Reeves C.D., et al. Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta. Applied and Environmental Microbiology 2005, 71:4840-4849.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 4840-4849
    • Schirmer, A.1    Gadkari, R.2    Reeves, C.D.3
  • 53
    • 30944466824 scopus 로고    scopus 로고
    • Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
    • Manichanh C., Rigottier-Gois L., Bonnaud E., et al. Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach. Gut 2006, 55:205-211.
    • (2006) Gut , vol.55 , pp. 205-211
    • Manichanh, C.1    Rigottier-Gois, L.2    Bonnaud, E.3
  • 54
    • 77956094278 scopus 로고    scopus 로고
    • GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
    • He Z., Deng Y., Van Nostrand J.D., et al. GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME Journal 2010, 4:1167-1179.
    • (2010) ISME Journal , vol.4 , pp. 1167-1179
    • He, Z.1    Deng, Y.2    Van Nostrand, J.D.3
  • 57
    • 19144362371 scopus 로고    scopus 로고
    • Microbial community genomics in the ocean
    • DeLong E.F. Microbial community genomics in the ocean. Nature Reviews. Microbiology 2005, 3:459-469.
    • (2005) Nature Reviews. Microbiology , vol.3 , pp. 459-469
    • DeLong, E.F.1
  • 59
    • 19444362298 scopus 로고    scopus 로고
    • A catabolic gene cluster for anaerobic benzoate degradation in methanotrophic microbial Black Sea mats
    • Kube M., Beck A., Meyerdierks A., et al. A catabolic gene cluster for anaerobic benzoate degradation in methanotrophic microbial Black Sea mats. Systematic and Applied Microbiology 2005, 28:287-294.
    • (2005) Systematic and Applied Microbiology , vol.28 , pp. 287-294
    • Kube, M.1    Beck, A.2    Meyerdierks, A.3
  • 60
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M., Egholm M., Altman W.E., et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437:376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3
  • 61
    • 76349086053 scopus 로고    scopus 로고
    • Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment
    • Iwai S., Chai B., Sul W.J., et al. Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment. ISME Journal 2010, 4:279-285.
    • (2010) ISME Journal , vol.4 , pp. 279-285
    • Iwai, S.1    Chai, B.2    Sul, W.J.3
  • 62
    • 33747043510 scopus 로고    scopus 로고
    • Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis
    • Schneiker S., Martins dos Santos V.A., Bartels D., et al. Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology 2006, 24:997-1004.
    • (2006) Nature Biotechnology , vol.24 , pp. 997-1004
    • Schneiker, S.1    Martins dos Santos, V.A.2    Bartels, D.3
  • 63
  • 65
    • 33144470047 scopus 로고    scopus 로고
    • Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling
    • Mahadevan R., Bond D.R., Butler J.E., et al. Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling. Applied and Environmental Microbiology 2006, 72:1558-1568.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 1558-1568
    • Mahadevan, R.1    Bond, D.R.2    Butler, J.E.3
  • 66
    • 60849099919 scopus 로고    scopus 로고
    • Genome-scale constraint-based modeling of Geobacter metallireducens
    • Sun J., Sayyar B., Butler J.E., et al. Genome-scale constraint-based modeling of Geobacter metallireducens. BMC Systems Biology 2009, 3:15.
    • (2009) BMC Systems Biology , vol.3 , pp. 15
    • Sun, J.1    Sayyar, B.2    Butler, J.E.3
  • 67
    • 69849084132 scopus 로고    scopus 로고
    • Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation
    • Scheibe T.D., Mahadevan R., Fang Y., et al. Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation. Microbial Biotechnology 2009, 2:274-286.
    • (2009) Microbial Biotechnology , vol.2 , pp. 274-286
    • Scheibe, T.D.1    Mahadevan, R.2    Fang, Y.3
  • 68
    • 33748805463 scopus 로고    scopus 로고
    • Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
    • Brodie E.L., Desantis T.Z., Joyner D.C., et al. Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Applied and Environmental Microbiology 2006, 72:6288-6298.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 6288-6298
    • Brodie, E.L.1    Desantis, T.Z.2    Joyner, D.C.3
  • 70
    • 77951499585 scopus 로고    scopus 로고
    • Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community
    • Hemme C.L., Deng Y., Gentry T.J., et al. Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. ISME Journal 2010, 4:660-672.
    • (2010) ISME Journal , vol.4 , pp. 660-672
    • Hemme, C.L.1    Deng, Y.2    Gentry, T.J.3
  • 71
    • 70349120678 scopus 로고    scopus 로고
    • Genomic insights in the anaerobic biodegradation of organic pollutants
    • Horizon Scientific Press, Norwich, UK, E. Diaz (Ed.)
    • Heider J., Rabus R. Genomic insights in the anaerobic biodegradation of organic pollutants. Microbial Biodegradation: Genomics and Molecular Biology 2008, 25-54. Horizon Scientific Press, Norwich, UK. E. Diaz (Ed.).
    • (2008) Microbial Biodegradation: Genomics and Molecular Biology , pp. 25-54
    • Heider, J.1    Rabus, R.2
  • 72
    • 0020336326 scopus 로고
    • Dehalogenation: A novel pathway for the anaerobic biodegradation of haloaromatic compounds
    • Suflita J.M., Horowitz A., Shelton D.R., Tiedje J.M. Dehalogenation: A novel pathway for the anaerobic biodegradation of haloaromatic compounds. Science 1982, 218:1115-1117.
    • (1982) Science , vol.218 , pp. 1115-1117
    • Suflita, J.M.1    Horowitz, A.2    Shelton, D.R.3    Tiedje, J.M.4
  • 73
    • 1642578252 scopus 로고    scopus 로고
    • Reductive dehalogenation of tetrachloroethylene by microorganisms: Current knowledge and application strategies
    • Chen G. Reductive dehalogenation of tetrachloroethylene by microorganisms: Current knowledge and application strategies. Applied Microbiology and Biotechnology 2004, 63:373-377.
    • (2004) Applied Microbiology and Biotechnology , vol.63 , pp. 373-377
    • Chen, G.1
  • 74
    • 55049091180 scopus 로고    scopus 로고
    • Characterization of the community structure of a dechlorinating mixed culture and comparisons of gene expression in planktonic and biofloc-associated 'Dehalococcoides' and Methanospirillum species
    • Rowe A.R., Lazar B.J., Morris R.M., Richardson R.E. Characterization of the community structure of a dechlorinating mixed culture and comparisons of gene expression in planktonic and biofloc-associated 'Dehalococcoides' and Methanospirillum species. Applied and Environmental Microbiology 2008, 74:6709-6719.
    • (2008) Applied and Environmental Microbiology , vol.74 , pp. 6709-6719
    • Rowe, A.R.1    Lazar, B.J.2    Morris, R.M.3    Richardson, R.E.4
  • 75
    • 6444221170 scopus 로고    scopus 로고
    • Microbial community structure in a thermophilic anaerobic hybrid reactor degrading terephthalate
    • Chen C.L., Macarie H., Ramirez I., et al. Microbial community structure in a thermophilic anaerobic hybrid reactor degrading terephthalate. Microbiology 2004, 150:3429-3440.
    • (2004) Microbiology , vol.150 , pp. 3429-3440
    • Chen, C.L.1    Macarie, H.2    Ramirez, I.3
  • 76
    • 78650601515 scopus 로고    scopus 로고
    • Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium
    • Lykidis A., Chen C.L., Tringe S.G., et al. Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium. ISME Journal 2010, 5(1):122-130.
    • (2010) ISME Journal , vol.5 , Issue.1 , pp. 122-130
    • Lykidis, A.1    Chen, C.L.2    Tringe, S.G.3
  • 79
    • 34249794257 scopus 로고    scopus 로고
    • Use of simulated data sets to evaluate the fidelity of metagenomic processing methods
    • Mavromatis K., Ivanova N., Barry K., et al. Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. Nature Methods 2007, 4:495-500.
    • (2007) Nature Methods , vol.4 , pp. 495-500
    • Mavromatis, K.1    Ivanova, N.2    Barry, K.3
  • 80
    • 58149505604 scopus 로고    scopus 로고
    • Discovering functional novelty in metagenomes: Examples from light-mediated processes
    • Singh A.H., Doerks T., Letunic I., et al. Discovering functional novelty in metagenomes: Examples from light-mediated processes. Journal of Bacteriology 2009, 191:32-41.
    • (2009) Journal of Bacteriology , vol.191 , pp. 32-41
    • Singh, A.H.1    Doerks, T.2    Letunic, I.3
  • 81
    • 33745742167 scopus 로고    scopus 로고
    • Mass spectrometric identification of proteins in complex post-genomic projects. Soluble proteins of the metabolically versatile, denitrifying 'Aromatoleum' sp. strain EbN1
    • Hufnagel P., Rabus R. Mass spectrometric identification of proteins in complex post-genomic projects. Soluble proteins of the metabolically versatile, denitrifying 'Aromatoleum' sp. strain EbN1. Journal of Molecular Microbiology and Biotechnology 2006, 11:53-81.
    • (2006) Journal of Molecular Microbiology and Biotechnology , vol.11 , pp. 53-81
    • Hufnagel, P.1    Rabus, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.