-
1
-
-
2142763872
-
Cleaning up with genomics: Applying molecular biology to bioremediation
-
Lovley D.R. Cleaning up with genomics: Applying molecular biology to bioremediation. Nature Reviews. Microbiology 2003, 1:35-44.
-
(2003)
Nature Reviews. Microbiology
, vol.1
, pp. 35-44
-
-
Lovley, D.R.1
-
3
-
-
0028183819
-
Effectiveness of bioremediation for the Exxon Valdez oil spill
-
Bragg J.R., Prince R.C., Harner E.J., Atlas R.M. Effectiveness of bioremediation for the Exxon Valdez oil spill. Nature 1994, 368:413-418.
-
(1994)
Nature
, vol.368
, pp. 413-418
-
-
Bragg, J.R.1
Prince, R.C.2
Harner, E.J.3
Atlas, R.M.4
-
4
-
-
20444439954
-
Is bioaugmentation a feasible strategy for pollutant removal and site remediation?
-
El Fantroussi S., Agathos S.N. Is bioaugmentation a feasible strategy for pollutant removal and site remediation?. Current Opinion in Microbiology 2005, 8:268-275.
-
(2005)
Current Opinion in Microbiology
, vol.8
, pp. 268-275
-
-
El Fantroussi, S.1
Agathos, S.N.2
-
5
-
-
0242507740
-
Scaling up: The next challenge in environmental microbiology
-
Paerl H.W., Steppe T.F. Scaling up: The next challenge in environmental microbiology. Environmental Microbiology 2003, 5:1025-1038.
-
(2003)
Environmental Microbiology
, vol.5
, pp. 1025-1038
-
-
Paerl, H.W.1
Steppe, T.F.2
-
7
-
-
11244319620
-
Environmental genomics: Exploring the unmined richness of microbes to degrade xenobiotics
-
Eyers L., George I., Schuler L., et al. Environmental genomics: Exploring the unmined richness of microbes to degrade xenobiotics. Applied Microbiology and Biotechnology 2004, 66:123-130.
-
(2004)
Applied Microbiology and Biotechnology
, vol.66
, pp. 123-130
-
-
Eyers, L.1
George, I.2
Schuler, L.3
-
8
-
-
53949095625
-
The metagenomics of disease-suppressive soils - experiences from the metacontrol project
-
van Elsas J.D., Costa R., Jansson J., et al. The metagenomics of disease-suppressive soils - experiences from the metacontrol project. Trends in Biotechnology 2008, 26:591-601.
-
(2008)
Trends in Biotechnology
, vol.26
, pp. 591-601
-
-
van Elsas, J.D.1
Costa, R.2
Jansson, J.3
-
9
-
-
19444385451
-
Metagenomic gene discovery: Past, present and future
-
Cowan D., Meyer Q., Stafford W., et al. Metagenomic gene discovery: Past, present and future. Trends in Biotechnology 2005, 23:321-329.
-
(2005)
Trends in Biotechnology
, vol.23
, pp. 321-329
-
-
Cowan, D.1
Meyer, Q.2
Stafford, W.3
-
11
-
-
84975729180
-
-
NRC Committee on Metagenomics: Challenges and Functional Applications, The National Academies, Washington, DC
-
The New Science of Metagenomics: Revealing the Secrets of Our Microbial Planet 2007, NRC Committee on Metagenomics: Challenges and Functional Applications, The National Academies, Washington, DC. http://www.nap.edu/catalog.php%3Frecord_id%3D11902.
-
(2007)
The New Science of Metagenomics: Revealing the Secrets of Our Microbial Planet
-
-
-
13
-
-
0036276905
-
Polychlorinated biphenyl-degrading microbial communities in soils and sediments
-
Abraham W.R., Nogales B., Golyshin P.N., et al. Polychlorinated biphenyl-degrading microbial communities in soils and sediments. Current Opinion in Microbiology 2002, 5:246-253.
-
(2002)
Current Opinion in Microbiology
, vol.5
, pp. 246-253
-
-
Abraham, W.R.1
Nogales, B.2
Golyshin, P.N.3
-
14
-
-
33646099162
-
Development and characterization of stable sediment-free anaerobic bacterial enrichment cultures that dechlorinate Aroclor 1260
-
Bedard D.L., Bailey J.J., Reiss B.L., Jerzak G.V. Development and characterization of stable sediment-free anaerobic bacterial enrichment cultures that dechlorinate Aroclor 1260. Applied and Environmental Microbiology 2006, 72:2460-2470.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 2460-2470
-
-
Bedard, D.L.1
Bailey, J.J.2
Reiss, B.L.3
Jerzak, G.V.4
-
15
-
-
0037336952
-
Synergistic degradation of linuron by a bacterial consortium and isolation of a single linuron-degrading Variovorax strain
-
Dejonghe W., Berteloot E., Goris J., et al. Synergistic degradation of linuron by a bacterial consortium and isolation of a single linuron-degrading Variovorax strain. Applied and Environmental Microbiology 2003, 69:1532-1541.
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 1532-1541
-
-
Dejonghe, W.1
Berteloot, E.2
Goris, J.3
-
16
-
-
0034469149
-
Enrichment and molecular characterization of a bacterial culture that degrades methoxy-methyl urea herbicides and their aniline derivatives
-
El Fantroussi S., Verstraete W., Top E.M. Enrichment and molecular characterization of a bacterial culture that degrades methoxy-methyl urea herbicides and their aniline derivatives. Applied and Environmental Microbiology 2000, 66:5110-5115.
-
(2000)
Applied and Environmental Microbiology
, vol.66
, pp. 5110-5115
-
-
El Fantroussi, S.1
Verstraete, W.2
Top, E.M.3
-
17
-
-
0025853357
-
Mineralization of linear alkylbenzene sulfonate by a four-member aerobic bacterial consortium
-
Jimenez L., Breen A., Thomas N., et al. Mineralization of linear alkylbenzene sulfonate by a four-member aerobic bacterial consortium. Applied and Environmental Microbiology 1991, 57:1566-1569.
-
(1991)
Applied and Environmental Microbiology
, vol.57
, pp. 1566-1569
-
-
Jimenez, L.1
Breen, A.2
Thomas, N.3
-
18
-
-
0033770681
-
Rapid mineralization of benzo[a]pyrene by a microbial consortium growing on diesel fuel
-
Kanaly R.A., Bartha R., Watanabe K., Harayama S. Rapid mineralization of benzo[a]pyrene by a microbial consortium growing on diesel fuel. Applied and Environmental Microbiology 2000, 66:4205-4211.
-
(2000)
Applied and Environmental Microbiology
, vol.66
, pp. 4205-4211
-
-
Kanaly, R.A.1
Bartha, R.2
Watanabe, K.3
Harayama, S.4
-
20
-
-
0038273910
-
Microbial consortia that degrade 2,4-DNT by interspecies metabolism: Isolation and characterisation
-
Snellinx Z., Taghavi S., Vangronsveld J., van der Lelie D. Microbial consortia that degrade 2,4-DNT by interspecies metabolism: Isolation and characterisation. Biodegradation 2003, 14:19-29.
-
(2003)
Biodegradation
, vol.14
, pp. 19-29
-
-
Snellinx, Z.1
Taghavi, S.2
Vangronsveld, J.3
van der Lelie, D.4
-
21
-
-
0036307720
-
Growth in coculture stimulates metabolism of the phenylurea herbicide isoproturon by Sphingomonas sp. strain SRS2
-
Sorensen S.R., Ronen Z., Aamand J. Growth in coculture stimulates metabolism of the phenylurea herbicide isoproturon by Sphingomonas sp. strain SRS2. Applied and Environmental Microbiology 2002, 68:3478-3485.
-
(2002)
Applied and Environmental Microbiology
, vol.68
, pp. 3478-3485
-
-
Sorensen, S.R.1
Ronen, Z.2
Aamand, J.3
-
22
-
-
33646480880
-
The selection of mixed microbial inocula in environmental biotechnology: Example using petroleum contaminated tropical soils
-
Supaphol S., Panichsakpatana S., Trakulnaleamsai S., et al. The selection of mixed microbial inocula in environmental biotechnology: Example using petroleum contaminated tropical soils. Journal of Microbiological Methods 2006, 65:432-441.
-
(2006)
Journal of Microbiological Methods
, vol.65
, pp. 432-441
-
-
Supaphol, S.1
Panichsakpatana, S.2
Trakulnaleamsai, S.3
-
23
-
-
0037297033
-
Physiological and molecular characterization of anaerobic benzene-degrading mixed cultures
-
Ulrich A.C., Edwards E.A. Physiological and molecular characterization of anaerobic benzene-degrading mixed cultures. Environmental Microbiology 2003, 5:92-102.
-
(2003)
Environmental Microbiology
, vol.5
, pp. 92-102
-
-
Ulrich, A.C.1
Edwards, E.A.2
-
24
-
-
0034437861
-
Microbial consortia involved in the anaerobic degradation of hydrocarbons
-
Zwolinski M.D., Harris R.F., Hickey W.J. Microbial consortia involved in the anaerobic degradation of hydrocarbons. Biodegradation 2000, 11:141-158.
-
(2000)
Biodegradation
, vol.11
, pp. 141-158
-
-
Zwolinski, M.D.1
Harris, R.F.2
Hickey, W.J.3
-
25
-
-
0034984682
-
Cleaning up behind us. The potential of genetically modified bacteria to break down toxic pollutants in the environment
-
de Lorenzo V. Cleaning up behind us. The potential of genetically modified bacteria to break down toxic pollutants in the environment. EMBO Reports 2001, 2:357-359.
-
(2001)
EMBO Reports
, vol.2
, pp. 357-359
-
-
de Lorenzo, V.1
-
26
-
-
57049185721
-
Molecular approaches in bioremediation
-
Wood T.K. Molecular approaches in bioremediation. Current Opinion in Biotechnology 2008, 19:572-578.
-
(2008)
Current Opinion in Biotechnology
, vol.19
, pp. 572-578
-
-
Wood, T.K.1
-
27
-
-
85012854705
-
Application of metagenomics to bioremediation
-
Caister Academic Press, Norfolk, UK, D. Marco (Ed.)
-
George I., Stenuit B., Agathos S.N. Application of metagenomics to bioremediation. Metagenomics: Theory, Methods and Applications 2010, 119-140. Caister Academic Press, Norfolk, UK. D. Marco (Ed.).
-
(2010)
Metagenomics: Theory, Methods and Applications
, pp. 119-140
-
-
George, I.1
Stenuit, B.2
Agathos, S.N.3
-
28
-
-
33748543962
-
Extraction of inhibitor-free metagenomic DNA from polluted sediments, compatible with molecular diversity analysis using adsorption and ion-exchange treatments
-
Desai C., Madamwar D. Extraction of inhibitor-free metagenomic DNA from polluted sediments, compatible with molecular diversity analysis using adsorption and ion-exchange treatments. Bioresource Technology 2007, 98:761-768.
-
(2007)
Bioresource Technology
, vol.98
, pp. 761-768
-
-
Desai, C.1
Madamwar, D.2
-
29
-
-
1642523441
-
Soil washing improves the recovery of total community DNA from polluted and high organic content sediments
-
Fortin N., Beaumier D., Lee K., Greer C.W. Soil washing improves the recovery of total community DNA from polluted and high organic content sediments. Journal of Microbiological Methods 2004, 56:181-191.
-
(2004)
Journal of Microbiological Methods
, vol.56
, pp. 181-191
-
-
Fortin, N.1
Beaumier, D.2
Lee, K.3
Greer, C.W.4
-
30
-
-
44249127260
-
Recovery, purification, and cloning of high-molecular-weight DNA from soil microorganisms
-
Liles M.R., Williamson L.L., Rodbumrer J., et al. Recovery, purification, and cloning of high-molecular-weight DNA from soil microorganisms. Applied and Environmental Microbiology 2008, 74:3302-3305.
-
(2008)
Applied and Environmental Microbiology
, vol.74
, pp. 3302-3305
-
-
Liles, M.R.1
Williamson, L.L.2
Rodbumrer, J.3
-
31
-
-
33646559836
-
Environmental whole-genome amplification to access microbial populations in contaminated sediments
-
Abulencia C.B., Wyborski D.L., Garcia J.A., et al. Environmental whole-genome amplification to access microbial populations in contaminated sediments. Applied and Environmental Microbiology 2006, 72:3291-3301.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 3291-3301
-
-
Abulencia, C.B.1
Wyborski, D.L.2
Garcia, J.A.3
-
32
-
-
40249095175
-
Something from (almost) nothing: The impact of multiple displacement amplification on microbial ecology
-
Binga E.K., Lasken R.S., Neufeld J.D. Something from (almost) nothing: The impact of multiple displacement amplification on microbial ecology. ISME Journal 2008, 2:233-241.
-
(2008)
ISME Journal
, vol.2
, pp. 233-241
-
-
Binga, E.K.1
Lasken, R.S.2
Neufeld, J.D.3
-
34
-
-
34547748431
-
Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds
-
Suenaga H., Ohnuki T., Miyazaki K. Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds. Environmental Microbiology 2007, 9:2289-2297.
-
(2007)
Environmental Microbiology
, vol.9
, pp. 2289-2297
-
-
Suenaga, H.1
Ohnuki, T.2
Miyazaki, K.3
-
35
-
-
33846796432
-
Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches
-
Ono A., Miyazaki R., Sota M., et al. Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches. Applied Microbiology and Biotechnology 2007, 74:501-510.
-
(2007)
Applied Microbiology and Biotechnology
, vol.74
, pp. 501-510
-
-
Ono, A.1
Miyazaki, R.2
Sota, M.3
-
37
-
-
19144366814
-
Metagenomics and industrial applications
-
Lorenz P., Eck J. Metagenomics and industrial applications. Nature Reviews. Microbiology 2005, 3:510-516.
-
(2005)
Nature Reviews. Microbiology
, vol.3
, pp. 510-516
-
-
Lorenz, P.1
Eck, J.2
-
38
-
-
77955685224
-
Screening for hydrocarbon biodegraders in a metagenomic clone library derived from Brazilian petroleum reservoirs
-
de Vasconcellos S., Angolini C.F., García I.N., et al. Screening for hydrocarbon biodegraders in a metagenomic clone library derived from Brazilian petroleum reservoirs. Organic Geochemistry 2010, 41:675-681.
-
(2010)
Organic Geochemistry
, vol.41
, pp. 675-681
-
-
de Vasconcellos, S.1
Angolini, C.F.2
García, I.N.3
-
39
-
-
0034016917
-
Isolation of adherent polycyclic aromatic hydrocarbon (PAH)-degrading bacteria using PAH-sorbing carriers
-
Bastiaens L., Springael D., Wattiau P., et al. Isolation of adherent polycyclic aromatic hydrocarbon (PAH)-degrading bacteria using PAH-sorbing carriers. Applied and Environmental Microbiology 2000, 66:1834-1843.
-
(2000)
Applied and Environmental Microbiology
, vol.66
, pp. 1834-1843
-
-
Bastiaens, L.1
Springael, D.2
Wattiau, P.3
-
40
-
-
0036001073
-
Enrichment versus biofilm culture: A functional and phylogenetic comparison of polycyclic aromatic hydrocarbon-degrading microbial communities
-
Stach J.E., Burns R.G. Enrichment versus biofilm culture: A functional and phylogenetic comparison of polycyclic aromatic hydrocarbon-degrading microbial communities. Environmental Microbiology 2002, 4:169-182.
-
(2002)
Environmental Microbiology
, vol.4
, pp. 169-182
-
-
Stach, J.E.1
Burns, R.G.2
-
41
-
-
77950859287
-
When metagenomics meets stable-isotope probing: Progress and perspectives
-
Chen Y., Murrell J.C. When metagenomics meets stable-isotope probing: Progress and perspectives. Trends in Microbiology 2010, 18:157-163.
-
(2010)
Trends in Microbiology
, vol.18
, pp. 157-163
-
-
Chen, Y.1
Murrell, J.C.2
-
42
-
-
34249948237
-
Who eats what, where and when? Isotope-labelling experiments are coming of age
-
Neufeld J.D., Wagner M., Murrell J.C. Who eats what, where and when? Isotope-labelling experiments are coming of age. ISME Journal 2007, 1:103-110.
-
(2007)
ISME Journal
, vol.1
, pp. 103-110
-
-
Neufeld, J.D.1
Wagner, M.2
Murrell, J.C.3
-
43
-
-
69449083604
-
DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment
-
Sul W.J., Park J., Quensen J.F., et al. DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment. Applied and Environmental Microbiology 2009, 75:5501-5506.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 5501-5506
-
-
Sul, W.J.1
Park, J.2
Quensen, J.F.3
-
44
-
-
4344598273
-
Quantifying the accessibility of the metagenome by random expression cloning techniques
-
Gabor E.M., Alkema W.B., Janssen D.B. Quantifying the accessibility of the metagenome by random expression cloning techniques. Environmental Microbiology 2004, 6:879-886.
-
(2004)
Environmental Microbiology
, vol.6
, pp. 879-886
-
-
Gabor, E.M.1
Alkema, W.B.2
Janssen, D.B.3
-
45
-
-
77649206077
-
Expanding small-molecule functional metagenomics through parallel screening of broad-host-range cosmid environmental DNA libraries in diverse proteobacteria
-
Craig J.W., Chang F.Y., Kim J.H., et al. Expanding small-molecule functional metagenomics through parallel screening of broad-host-range cosmid environmental DNA libraries in diverse proteobacteria. Applied and Environmental Microbiology 2010, 76:1633-1641.
-
(2010)
Applied and Environmental Microbiology
, vol.76
, pp. 1633-1641
-
-
Craig, J.W.1
Chang, F.Y.2
Kim, J.H.3
-
46
-
-
13944259584
-
Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts
-
Martinez A., Kolvek S.J., Yip S.J., et al. Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts. Applied and Environmental Microbiology 2004, 70:2452-2463.
-
(2004)
Applied and Environmental Microbiology
, vol.70
, pp. 2452-2463
-
-
Martinez, A.1
Kolvek, S.J.2
Yip, S.J.3
-
47
-
-
28644431563
-
A wide host-range metagenomic library from a waste water treatment plant yields a novel alcohol/aldehyde dehydrogenase
-
Wexler M., Bond P.L., Richardson D.J., Johnston A.W. A wide host-range metagenomic library from a waste water treatment plant yields a novel alcohol/aldehyde dehydrogenase. Environmental Microbiology 2005, 7:1917-1926.
-
(2005)
Environmental Microbiology
, vol.7
, pp. 1917-1926
-
-
Wexler, M.1
Bond, P.L.2
Richardson, D.J.3
Johnston, A.W.4
-
48
-
-
26844491940
-
Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor
-
Williamson L.L., Borlee B.R., Schloss P.D., et al. Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor. Applied and Environmental Microbiology 2005, 71:6335-6344.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 6335-6344
-
-
Williamson, L.L.1
Borlee, B.R.2
Schloss, P.D.3
-
49
-
-
19144369096
-
Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes
-
Uchiyama T., Abe T., Ikemura T., Watanabe K. Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes. Nature Biotechnology 2005, 23:88-93.
-
(2005)
Nature Biotechnology
, vol.23
, pp. 88-93
-
-
Uchiyama, T.1
Abe, T.2
Ikemura, T.3
Watanabe, K.4
-
50
-
-
85012842779
-
Problems with metagenomic screening
-
author reply 1045-1046
-
de Lorenzo V. Problems with metagenomic screening. Nature Biotechnology 2005, 23:1045. author reply 1045-1046.
-
(2005)
Nature Biotechnology
, vol.23
, pp. 1045
-
-
de Lorenzo, V.1
-
51
-
-
33644956913
-
Surveying biotransformations with a la carte genetic traps: Translating dehydrochlorination of lindane (gamma-hexachlorocyclohexane) into lacZ-based phenotypes
-
Mohn W.W., Garmendia J., Galvao T.C., de Lorenzo V. Surveying biotransformations with a la carte genetic traps: Translating dehydrochlorination of lindane (gamma-hexachlorocyclohexane) into lacZ-based phenotypes. Environmental Microbiology 2006, 8:546-555.
-
(2006)
Environmental Microbiology
, vol.8
, pp. 546-555
-
-
Mohn, W.W.1
Garmendia, J.2
Galvao, T.C.3
de Lorenzo, V.4
-
52
-
-
23744472955
-
Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta
-
Schirmer A., Gadkari R., Reeves C.D., et al. Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta. Applied and Environmental Microbiology 2005, 71:4840-4849.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 4840-4849
-
-
Schirmer, A.1
Gadkari, R.2
Reeves, C.D.3
-
53
-
-
30944466824
-
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
-
Manichanh C., Rigottier-Gois L., Bonnaud E., et al. Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach. Gut 2006, 55:205-211.
-
(2006)
Gut
, vol.55
, pp. 205-211
-
-
Manichanh, C.1
Rigottier-Gois, L.2
Bonnaud, E.3
-
54
-
-
77956094278
-
GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
-
He Z., Deng Y., Van Nostrand J.D., et al. GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME Journal 2010, 4:1167-1179.
-
(2010)
ISME Journal
, vol.4
, pp. 1167-1179
-
-
He, Z.1
Deng, Y.2
Van Nostrand, J.D.3
-
57
-
-
19144362371
-
Microbial community genomics in the ocean
-
DeLong E.F. Microbial community genomics in the ocean. Nature Reviews. Microbiology 2005, 3:459-469.
-
(2005)
Nature Reviews. Microbiology
, vol.3
, pp. 459-469
-
-
DeLong, E.F.1
-
59
-
-
19444362298
-
A catabolic gene cluster for anaerobic benzoate degradation in methanotrophic microbial Black Sea mats
-
Kube M., Beck A., Meyerdierks A., et al. A catabolic gene cluster for anaerobic benzoate degradation in methanotrophic microbial Black Sea mats. Systematic and Applied Microbiology 2005, 28:287-294.
-
(2005)
Systematic and Applied Microbiology
, vol.28
, pp. 287-294
-
-
Kube, M.1
Beck, A.2
Meyerdierks, A.3
-
60
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M., Egholm M., Altman W.E., et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437:376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
-
61
-
-
76349086053
-
Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment
-
Iwai S., Chai B., Sul W.J., et al. Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment. ISME Journal 2010, 4:279-285.
-
(2010)
ISME Journal
, vol.4
, pp. 279-285
-
-
Iwai, S.1
Chai, B.2
Sul, W.J.3
-
62
-
-
33747043510
-
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis
-
Schneiker S., Martins dos Santos V.A., Bartels D., et al. Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nature Biotechnology 2006, 24:997-1004.
-
(2006)
Nature Biotechnology
, vol.24
, pp. 997-1004
-
-
Schneiker, S.1
Martins dos Santos, V.A.2
Bartels, D.3
-
63
-
-
33644520519
-
The Genomes On Line Database (GOLD) v.2: A monitor of genome projects worldwide
-
Liolios K., Tavernarakis N., Hugenholtz P., Kyrpides N.C. The Genomes On Line Database (GOLD) v.2: A monitor of genome projects worldwide. Nucleic Acids Research 2006, 34:D332-D334.
-
(2006)
Nucleic Acids Research
, vol.34
, pp. D332-D334
-
-
Liolios, K.1
Tavernarakis, N.2
Hugenholtz, P.3
Kyrpides, N.C.4
-
64
-
-
0025920876
-
Microbial reduction of uranium
-
Lovley D.R., Phillips E.J.P., Gorby Y.A., Landa E.R. Microbial reduction of uranium. Nature 1991, 350:413-416.
-
(1991)
Nature
, vol.350
, pp. 413-416
-
-
Lovley, D.R.1
Phillips, E.J.P.2
Gorby, Y.A.3
Landa, E.R.4
-
65
-
-
33144470047
-
Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling
-
Mahadevan R., Bond D.R., Butler J.E., et al. Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling. Applied and Environmental Microbiology 2006, 72:1558-1568.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 1558-1568
-
-
Mahadevan, R.1
Bond, D.R.2
Butler, J.E.3
-
66
-
-
60849099919
-
Genome-scale constraint-based modeling of Geobacter metallireducens
-
Sun J., Sayyar B., Butler J.E., et al. Genome-scale constraint-based modeling of Geobacter metallireducens. BMC Systems Biology 2009, 3:15.
-
(2009)
BMC Systems Biology
, vol.3
, pp. 15
-
-
Sun, J.1
Sayyar, B.2
Butler, J.E.3
-
67
-
-
69849084132
-
Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation
-
Scheibe T.D., Mahadevan R., Fang Y., et al. Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation. Microbial Biotechnology 2009, 2:274-286.
-
(2009)
Microbial Biotechnology
, vol.2
, pp. 274-286
-
-
Scheibe, T.D.1
Mahadevan, R.2
Fang, Y.3
-
68
-
-
33748805463
-
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
-
Brodie E.L., Desantis T.Z., Joyner D.C., et al. Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Applied and Environmental Microbiology 2006, 72:6288-6298.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 6288-6298
-
-
Brodie, E.L.1
Desantis, T.Z.2
Joyner, D.C.3
-
70
-
-
77951499585
-
Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community
-
Hemme C.L., Deng Y., Gentry T.J., et al. Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. ISME Journal 2010, 4:660-672.
-
(2010)
ISME Journal
, vol.4
, pp. 660-672
-
-
Hemme, C.L.1
Deng, Y.2
Gentry, T.J.3
-
71
-
-
70349120678
-
Genomic insights in the anaerobic biodegradation of organic pollutants
-
Horizon Scientific Press, Norwich, UK, E. Diaz (Ed.)
-
Heider J., Rabus R. Genomic insights in the anaerobic biodegradation of organic pollutants. Microbial Biodegradation: Genomics and Molecular Biology 2008, 25-54. Horizon Scientific Press, Norwich, UK. E. Diaz (Ed.).
-
(2008)
Microbial Biodegradation: Genomics and Molecular Biology
, pp. 25-54
-
-
Heider, J.1
Rabus, R.2
-
72
-
-
0020336326
-
Dehalogenation: A novel pathway for the anaerobic biodegradation of haloaromatic compounds
-
Suflita J.M., Horowitz A., Shelton D.R., Tiedje J.M. Dehalogenation: A novel pathway for the anaerobic biodegradation of haloaromatic compounds. Science 1982, 218:1115-1117.
-
(1982)
Science
, vol.218
, pp. 1115-1117
-
-
Suflita, J.M.1
Horowitz, A.2
Shelton, D.R.3
Tiedje, J.M.4
-
73
-
-
1642578252
-
Reductive dehalogenation of tetrachloroethylene by microorganisms: Current knowledge and application strategies
-
Chen G. Reductive dehalogenation of tetrachloroethylene by microorganisms: Current knowledge and application strategies. Applied Microbiology and Biotechnology 2004, 63:373-377.
-
(2004)
Applied Microbiology and Biotechnology
, vol.63
, pp. 373-377
-
-
Chen, G.1
-
74
-
-
55049091180
-
Characterization of the community structure of a dechlorinating mixed culture and comparisons of gene expression in planktonic and biofloc-associated 'Dehalococcoides' and Methanospirillum species
-
Rowe A.R., Lazar B.J., Morris R.M., Richardson R.E. Characterization of the community structure of a dechlorinating mixed culture and comparisons of gene expression in planktonic and biofloc-associated 'Dehalococcoides' and Methanospirillum species. Applied and Environmental Microbiology 2008, 74:6709-6719.
-
(2008)
Applied and Environmental Microbiology
, vol.74
, pp. 6709-6719
-
-
Rowe, A.R.1
Lazar, B.J.2
Morris, R.M.3
Richardson, R.E.4
-
75
-
-
6444221170
-
Microbial community structure in a thermophilic anaerobic hybrid reactor degrading terephthalate
-
Chen C.L., Macarie H., Ramirez I., et al. Microbial community structure in a thermophilic anaerobic hybrid reactor degrading terephthalate. Microbiology 2004, 150:3429-3440.
-
(2004)
Microbiology
, vol.150
, pp. 3429-3440
-
-
Chen, C.L.1
Macarie, H.2
Ramirez, I.3
-
76
-
-
78650601515
-
Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium
-
Lykidis A., Chen C.L., Tringe S.G., et al. Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium. ISME Journal 2010, 5(1):122-130.
-
(2010)
ISME Journal
, vol.5
, Issue.1
, pp. 122-130
-
-
Lykidis, A.1
Chen, C.L.2
Tringe, S.G.3
-
79
-
-
34249794257
-
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods
-
Mavromatis K., Ivanova N., Barry K., et al. Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. Nature Methods 2007, 4:495-500.
-
(2007)
Nature Methods
, vol.4
, pp. 495-500
-
-
Mavromatis, K.1
Ivanova, N.2
Barry, K.3
-
80
-
-
58149505604
-
Discovering functional novelty in metagenomes: Examples from light-mediated processes
-
Singh A.H., Doerks T., Letunic I., et al. Discovering functional novelty in metagenomes: Examples from light-mediated processes. Journal of Bacteriology 2009, 191:32-41.
-
(2009)
Journal of Bacteriology
, vol.191
, pp. 32-41
-
-
Singh, A.H.1
Doerks, T.2
Letunic, I.3
-
81
-
-
33745742167
-
Mass spectrometric identification of proteins in complex post-genomic projects. Soluble proteins of the metabolically versatile, denitrifying 'Aromatoleum' sp. strain EbN1
-
Hufnagel P., Rabus R. Mass spectrometric identification of proteins in complex post-genomic projects. Soluble proteins of the metabolically versatile, denitrifying 'Aromatoleum' sp. strain EbN1. Journal of Molecular Microbiology and Biotechnology 2006, 11:53-81.
-
(2006)
Journal of Molecular Microbiology and Biotechnology
, vol.11
, pp. 53-81
-
-
Hufnagel, P.1
Rabus, R.2
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