-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0000622269
-
In situ identification of micro-organisms by whole-cell hybridization with rRNA-targeted nucleic acid probes
-
Edited by A. D. L. Akkerman, J. D. van Elsas & F. J. de Bruijn. Dordrecht, The Netherlands: Kluwer
-
Amann, R. I. (1995). In situ identification of micro-organisms by whole-cell hybridization with rRNA-targeted nucleic acid probes. In Molecular Microbial Ecology Manual, pp. 1-15. Edited by A. D. L. Akkerman, J. D. van Elsas & F. J. de Bruijn. Dordrecht, The Netherlands: Kluwer.
-
(1995)
Molecular Microbial Ecology Manual
, pp. 1-15
-
-
Amann, R.I.1
-
3
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R. I., Ludwig, W. & Schleifer, K. H. (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59, 143-169.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
4
-
-
0034554745
-
Ecological study of a bioaugmentation failure
-
Bouchez, T., Patureau, D., Dabert, P., Juretschko, S., Dore, J., Delgenes, P., Moletta, R. & Wagner, M. (2000). Ecological study of a bioaugmentation failure. Environ Microbiol 2, 179-190.
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 179-190
-
-
Bouchez, T.1
Patureau, D.2
Dabert, P.3
Juretschko, S.4
Dore, J.5
Delgenes, P.6
Moletta, R.7
Wagner, M.8
-
6
-
-
0030660430
-
Pilot study of UASB process treating PTA manufacturing wastewater
-
Cheng, S. S., Ho, C. Y. & Wu, J. H. (1997). Pilot study of UASB process treating PTA manufacturing wastewater. Water Sci Technol 36(6-7), 73-82.
-
(1997)
Water Sci. Technol.
, vol.36
, Issue.6-7
, pp. 73-82
-
-
Cheng, S.S.1
Ho, C.Y.2
Wu, J.H.3
-
7
-
-
0344172842
-
The domain-specific probe EUB338 is insufficient for the detection of all bacteria: Development and evaluation of a more comprehensive probe set
-
Daims, H, Brülh,, Amann, R., Schleifer, K. H. & Wagner, M. (1999). The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22, 434-444.
-
(1999)
Syst. Appl. Microbiol.
, vol.22
, pp. 434-444
-
-
Daims, H.1
Brülh, A.2
Amann, R.3
Schleifer, K.H.4
Wagner, M.5
-
8
-
-
0032189023
-
Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation
-
Dojka, M. A., Hugenholtz, P., Haack, S. K. & Pace, N. R. (1998). Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl Environ Microbiol 64, 3869-3877.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3869-3877
-
-
Dojka, M.A.1
Hugenholtz, P.2
Haack, S.K.3
Pace, N.R.4
-
9
-
-
0029294142
-
Characterization of different microbial nuclei as potential precursors of anaerobic granulation
-
El Mamouni, R., Guiot, S. R., Leduc, R. & Costerton, J. W. (1995). Characterization of different microbial nuclei as potential precursors of anaerobic granulation. J Biotechnol 39, 239-249.
-
(1995)
J. Biotechnol.
, vol.39
, pp. 239-249
-
-
El Mamouni, R.1
Guiot, S.R.2
Leduc, R.3
Costerton, J.W.4
-
10
-
-
0026760934
-
The use of rRNA sequences and fluorescent probes to investigate the phylogenetic positions of the anaerobic ciliate Metopus palaeformis and its archaeobacterial endosymbiont
-
Embley, T. M., Finlay, B. J., Thomas, R. H. & Dyal, P. L. (1992). The use of rRNA sequences and fluorescent probes to investigate the phylogenetic positions of the anaerobic ciliate Metopus palaeformis and its archaeobacterial endosymbiont. J Gen Microbiol 138, 1479-1487.
-
(1992)
J. Gen. Microbiol.
, vol.138
, pp. 1479-1487
-
-
Embley, T.M.1
Finlay, B.J.2
Thomas, R.H.3
Dyal, P.L.4
-
11
-
-
0030668115
-
Inhibition of anaerobic digestion by terephthalic acid and its aromatic by products
-
Fajardo, C., Guyot, J.-P., Macarie, H. & Monroy, O. (1997). Inhibition of anaerobic digestion by terephthalic acid and its aromatic by products. Water Sci Technol 36(6-7), 83-90.
-
(1997)
Water Sci. Technol.
, vol.36
, Issue.6-7
, pp. 83-90
-
-
Fajardo, C.1
Guyot, J.-P.2
Macarie, H.3
Monroy, O.4
-
12
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
-
(1999)
Nucleic Acids Symp. Ser.
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
13
-
-
0026762659
-
Dual staining of natural bacterioplankton with 4′,6-diamidino-2-phenylindole and fluorescent oligonucleotide probes targeting kingdom-level 16S rRNA sequences
-
Hicks, R. E., Amann, R. I. & Stahl, D. A. (1992). Dual staining of natural bacterioplankton with 4′ ,6-diamidino-2-phenylindole and fluorescent oligonucleotide probes targeting kingdom-level 16S rRNA sequences. Appl Environ Microbiol 58, 2158-2163.
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 2158-2163
-
-
Hicks, R.E.1
Amann, R.I.2
Stahl, D.A.3
-
14
-
-
0031912606
-
Novel division level bacterial diversity in a Yellowstone hot spring
-
Hugenholtz, P., Pitulle, C., Hershberger, K. L. & Pace, N. R. (1998). Novel division level bacterial diversity in a Yellowstone hot spring. J Bacteriol 180, 366-376.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 366-376
-
-
Hugenholtz, P.1
Pitulle, C.2
Hershberger, K.L.3
Pace, N.R.4
-
15
-
-
0036737613
-
Pelotomaculum thermopropionicum gen. nov., sp. nov., an anaerobic, thermophilic, syntrophic propionate-oxidizing bacterium
-
Imachi, H., Sekiguchi, Y., Kamagata, Y., Hanada, S., Ohashi, A. & Harada, H. (2002). Pelotomaculum thermopropionicum gen. nov., sp. nov., an anaerobic, thermophilic, syntrophic propionate-oxidizing bacterium. Int J Syst Evol Microbiol 52, 1729-1735.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 1729-1735
-
-
Imachi, H.1
Sekiguchi, Y.2
Kamagata, Y.3
Hanada, S.4
Ohashi, A.5
Harada, H.6
-
16
-
-
0027460327
-
Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences
-
Kane, M. D., Poulsen, L. K. & Stahl, D. A. (1993). Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences. Appl Environ Microbiol 59, 682-686.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 682-686
-
-
Kane, M.D.1
Poulsen, L.K.2
Stahl, D.A.3
-
17
-
-
0033009710
-
Reductive dechlorination of tetrachloroethene to cis-1,2-dichloroethene by a thermophilic anaerobic enrichment culture
-
Kengen, S. W. M., Breidenbach, C. G., Felske, A., Stams, A. J. M., Schraa, G. & de Vos, W. M. (1999). Reductive dechlorination of tetrachloroethene to cis-1,2-dichloroethene by a thermophilic anaerobic enrichment culture. Appl Environ Microbiol 65, 2312-2316.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 2312-2316
-
-
Kengen, S.W.M.1
Breidenbach, C.G.2
Felske, A.3
Stams, A.J.M.4
Schraa, G.5
de Vos, W.M.6
-
18
-
-
0030724606
-
Anaerobic pretreatment of petrochemical effluents: Terephthalic acid wastewater
-
Kleerebezem, R., Mortier, J., Hulshoff Pol, L. W. & Lettinga, G. (1997). Anaerobic pretreatment of petrochemical effluents: terephthalic acid wastewater. Water Sci Technol 36 2-3), 237-248.
-
(1997)
Water Sci. Technol.
, vol.36
, Issue.2-3
, pp. 237-248
-
-
Kleerebezem, R.1
Mortier, J.2
Hulshoff Pol, L.W.3
Lettinga, G.4
-
19
-
-
0345580639
-
Anaerobic degradation of phthalate isomers by methanogenic consortia
-
Kleerebezem, R., Hulshoff Pol, L. W. & Lettinga, G. (1999a). Anaerobic degradation of phthalate isomers by methanogenic consortia. Appl Environ Microbiol 65, 1152-1160.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1152-1160
-
-
Kleerebezem, R.1
Hulshoff Pol, L.W.2
Lettinga, G.3
-
20
-
-
0345148799
-
The role of benzoate in anaerobic degradation of terephthalate
-
Kleerebezem, R., Hulshoff Pol, L. W. & Lettinga, G. (1999b). The role of benzoate in anaerobic degradation of terephthalate. Appl Environ Microbiol 65, 1161-1167.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1161-1167
-
-
Kleerebezem, R.1
Hulshoff Pol, L.W.2
Lettinga, G.3
-
21
-
-
0033136117
-
High-rate treatment of terephthalate in anaerobic hybrid reactors
-
Kleerebezem, R., Ivalo, M., Hulshoff Pol, L. W. & Lettinga, G. (1999c). High-rate treatment of terephthalate in anaerobic hybrid reactors. Biotechnol Prog 15, 347-357.
-
(1999)
Biotechnol. Prog.
, vol.15
, pp. 347-357
-
-
Kleerebezem, R.1
Ivalo, M.2
Hulshoff Pol, L.W.3
Lettinga, G.4
-
22
-
-
0036139211
-
MEGA2: Molecular evolutionary genetics analysis software
-
Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
-
(2001)
Bioinformatics
, vol.17
, pp. 1244-1245
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.B.3
Nei, M.4
-
23
-
-
0030661563
-
Characterization of microbial diversity by determining terminal restriction fragment length polymorphism of 16S ribosomal DNA
-
Liu, W. T., Marsh, T. L., Cheng, H. & Forney, L. J. (1997). Characterization of microbial diversity by determining terminal restriction fragment length polymorphism of 16S ribosomal DNA. Appl Environ Microbiol 63, 4516-4522.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4516-4522
-
-
Liu, W.T.1
Marsh, T.L.2
Cheng, H.3
Forney, L.J.4
-
24
-
-
0036189216
-
Denaturing gradient gel electrophoresis polymorphism for rapid 16S rDNA clone screening and microbial diversity estimation
-
Liu, W. T., Huang, C. L., Hu, J. Y., Soon, L. F., Ong, S. L. & Ng, W. J. (2002). Denaturing gradient gel electrophoresis polymorphism for rapid 16S rDNA clone screening and microbial diversity estimation. J Biosci Bioeng 93, 101-103.
-
(2002)
J. Biosci. Bioeng.
, vol.93
, pp. 101-103
-
-
Liu, W.T.1
Huang, C.L.2
Hu, J.Y.3
Soon, L.F.4
Ong, S.L.5
Ng, W.J.6
-
25
-
-
0036795787
-
Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment
-
Loy, A., Lehner, A., Lee, N., Adamczyk, J., Meier, H., Ernst, J., Schleifer, K. H. & Wagner, M. (2002). Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Appl Environ Microbiol 68, 5064-5081.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 5064-5081
-
-
Loy, A.1
Lehner, A.2
Lee, N.3
Adamczyk, J.4
Meier, H.5
Ernst, J.6
Schleifer, K.H.7
Wagner, M.8
-
26
-
-
2542523843
-
ARB: A software environment for sequence data
-
& 29 other authors
-
Ludwig, W., Strunk, O., Westram, R. & 29 other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
-
27
-
-
0033784507
-
Overview of the application of anaerobic treatment to chemical and petrochemical wastewaters
-
Macarie, H. (2000). Overview of the application of anaerobic treatment to chemical and petrochemical wastewaters. Water Sci Technol 42(5-6), 201-214.
-
(2000)
Water Sci. Technol.
, vol.42
, Issue.5-6
, pp. 201-214
-
-
Macarie, H.1
-
28
-
-
0026616512
-
Anaerobic treatment of a petrochemical wastewater from a terephthalic acid plant
-
Macarie, H., Noyola, A. & Guyot, J.-P. (1992). Anaerobic treatment of a petrochemical wastewater from a terephthalic acid plant. Water Sci Technol 25(7), 223-235.
-
(1992)
Water Sci. Technol.
, vol.25
, Issue.7
, pp. 223-235
-
-
Macarie, H.1
Noyola, A.2
Guyot, J.-P.3
-
29
-
-
0033954255
-
The RDP (Ribosomal Database Project) continues
-
& 9 other authors
-
Maidak, B. L., Cole, J. R., Lilburn, T. G. & 9 other authors (2000). The RDP (Ribosomal Database Project) continues. Nucleic Acids Res 28, 173-174.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 173-174
-
-
Maidak, B.L.1
Cole, J.R.2
Lilburn, T.G.3
-
30
-
-
9344247522
-
Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment
-
Manz, W., Amann, R., Ludwig, W., Vancanneyt, M. & Schleifer, K. H. (1996). Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment. Microbiology 142, 1097-1106.
-
(1996)
Microbiology
, vol.142
, pp. 1097-1106
-
-
Manz, W.1
Amann, R.2
Ludwig, W.3
Vancanneyt, M.4
Schleifer, K.H.5
-
31
-
-
1642410239
-
Identification and isolation of anaerobic, syntrophic phthalate isomer-degrading microbes from methanogenic sludges treating wastewater from terephthalate manufacturing
-
Qiu, Y. L., Sekiguchi, Y., Imachi, H., Kamagata, Y., Tseng, I. C., Cheng, S. S., Ohashi, A. & Harada, H. (2004). Identification and isolation of anaerobic, syntrophic phthalate isomer-degrading microbes from methanogenic sludges treating wastewater from terephthalate manufacturing. Appl Environ Microbiol 70, 1617-1626.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 1617-1626
-
-
Qiu, Y.L.1
Sekiguchi, Y.2
Imachi, H.3
Kamagata, Y.4
Tseng, I.C.5
Cheng, S.S.6
Ohashi, A.7
Harada, H.8
-
32
-
-
0028165830
-
Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens
-
Raskin, L., Stomly, J. M., Rittmann, B. E. & Stahl, D. A. (1994). Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl Environ Microbiol 60 1232-1240.
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 1232-1240
-
-
Raskin, L.1
Stomly, J.M.2
Rittmann, B.E.3
Stahl, D.A.4
-
34
-
-
0034096495
-
Molecular evidence for genus-level diversity of bacteria of catalyzing anaerobic ammonium oxidation
-
Schmid, M., Twachtmann, U., Klein, M., Strous, M., Juretschko, S., Jetten, M. S. M., Metzger, J. W., Schleifer, K.-H. & Wagner, M. (2000). Molecular evidence for genus-level diversity of bacteria of catalyzing anaerobic ammonium oxidation. Syst Appl Microbiol 23, 93-106.
-
(2000)
Syst. Appl. Microbiol.
, vol.23
, pp. 93-106
-
-
Schmid, M.1
Twachtmann, U.2
Klein, M.3
Strous, M.4
Juretschko, S.5
Jetten, M.S.M.6
Metzger, J.W.7
Schleifer, K.-H.8
Wagner, M.9
-
35
-
-
0031719182
-
Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis
-
Sekiguchi, Y., Kamagata, Y., Syutsubo, K., Ohashi, A., Harada, H. & Nakamura, K. (1998). Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis. Microbiology 144, 2655-2665.
-
(1998)
Microbiology
, vol.144
, pp. 2655-2665
-
-
Sekiguchi, Y.1
Kamagata, Y.2
Syutsubo, K.3
Ohashi, A.4
Harada, H.5
Nakamura, K.6
-
36
-
-
0033027522
-
Fluorescence in situ hybridization using 16S rRNA-targeted oligonucleotides reveals localization of methanogens and selected uncultured bacteria in mesophilic and thermophilic sludge granules
-
Sekiguchi, Y., Kamagata, Y., Nakamura, K., Ohashi, A. & Harada, H. (1999). Fluorescence in situ hybridization using 16S rRNA-targeted oligonucleotides reveals localization of methanogens and selected uncultured bacteria in mesophilic and thermophilic sludge granules. Appl Environ Microbiol 65, 1280-1288.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1280-1288
-
-
Sekiguchi, Y.1
Kamagata, Y.2
Nakamura, K.3
Ohashi, A.4
Harada, H.5
-
37
-
-
0003341851
-
Development and application of nucleic acid probes
-
Edited by E. Stackebrandt & M. Goodfellow. New York: Wiley
-
Stahl, D. A. & Amann, R. (1991). Development and application of nucleic acid probes. In Nucleic Acid Techniques in Bacterial Systematics, pp. 205-248. Edited by E. Stackebrandt & M. Goodfellow. New York: Wiley.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 205-248
-
-
Stahl, D.A.1
Amann, R.2
-
39
-
-
0033771976
-
Detection of Desulfotomaculum in an Italian rice paddy soil by 16S ribosomal nucleic acid analyses
-
Stubner, S. & Meuser, K. (2000). Detection of Desulfotomaculum in an Italian rice paddy soil by 16S ribosomal nucleic acid analyses. FEMS Microbiol Ecol 34, 73-80.
-
(2000)
FEMS Microbiol. Ecol.
, vol.34
, pp. 73-80
-
-
Stubner, S.1
Meuser, K.2
-
41
-
-
0030054273
-
Limitation of thermophilic anaerobic wastewater treatment and the consequences for process design
-
van Lier, J. B. (1996). Limitation of thermophilic anaerobic wastewater treatment and the consequences for process design. Antonie Van Leeuwenhoek 69, 1-14.
-
(1996)
Antonie van Leeuwenhoek
, vol.69
, pp. 1-14
-
-
van Lier, J.B.1
-
42
-
-
0030872771
-
High-rate anaerobic wastewater treatment under psychrophilic and thermophilic conditions
-
van Lier, J. B., Rebac, S. & Lettinga, G. (1997). High-rate anaerobic wastewater treatment under psychrophilic and thermophilic conditions. Water Sci Technol 35(10), 199-206.
-
(1997)
Water Sci. Technol.
, vol.35
, Issue.10
, pp. 199-206
-
-
van Lier, J.B.1
Rebac, S.2
Lettinga, G.3
-
43
-
-
0027339723
-
Optimizing fluorescent in situ hybridization with rRNA-targeted olifonucleotide probes for low cytometric identification of microorganisms
-
Wallner, G., Amann, R. & Beisker, W. (1993). Optimizing fluorescent in situ hybridization with rRNA-targeted olifonucleotide probes for low cytometric identification of microorganisms. Cytometry 14, 136-143.
-
(1993)
Cytometry
, vol.14
, pp. 136-143
-
-
Wallner, G.1
Amann, R.2
Beisker, W.3
-
44
-
-
0035131221
-
Chracterization of microbial consortia in an anaerobic grnualar sludge system treating terephthalate
-
Wu, J. H., Liu, W. T., Tseng, I. C. & Cheng, S. S. (2001). Chracterization of microbial consortia in an anaerobic grnualar sludge system treating terephthalate. Microbiology 147, 373-382.
-
(2001)
Microbiology
, vol.147
, pp. 373-382
-
-
Wu, J.H.1
Liu, W.T.2
Tseng, I.C.3
Cheng, S.S.4
|