메뉴 건너뛰기




Volumn 72, Issue 2, 2006, Pages 1558-1568

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling

Author keywords

[No Author keywords available]

Indexed keywords

CONTAMINATION; ELECTRON TRANSPORT PROPERTIES; GROUNDWATER; IRON; METABOLISM; OXIDATION;

EID: 33144470047     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.72.2.1558-1568.2006     Document Type: Article
Times cited : (277)

References (91)
  • 2
    • 0032080492 scopus 로고    scopus 로고
    • Anaerobic benzene oxidation in the Fe(III) reduction zone of petroleum contaminated aquifers
    • Anderson, R. T., J. N. Rooney-Varga, C. V. Gaw, and D. R. Lovley. 1998. Anaerobic benzene oxidation in the Fe(III) reduction zone of petroleum contaminated aquifers. Environ. Sci. Technol. 32:1222-1229.
    • (1998) Environ. Sci. Technol. , vol.32 , pp. 1222-1229
    • Anderson, R.T.1    Rooney-Varga, J.N.2    Gaw, C.V.3    Lovley, D.R.4
  • 4
    • 0002440017 scopus 로고
    • Estimation of total carbohydrate in solution, in suspension, or in whole cells or tissue by the anthrone method
    • Ashwell, G. 1957. Estimation of total carbohydrate in solution, in suspension, or in whole cells or tissue by the anthrone method. Methods Enzymol. 3:73-78.
    • (1957) Methods Enzymol. , vol.3 , pp. 73-78
    • Ashwell, G.1
  • 5
    • 0036286631 scopus 로고    scopus 로고
    • Energy balance for analysis of complex metabolic networks
    • Beard, D. A., S. C. Liang, and H. Qian. 2002. Energy balance for analysis of complex metabolic networks. Biophys. J. 83:79-86.
    • (2002) Biophys. J. , vol.83 , pp. 79-86
    • Beard, D.A.1    Liang, S.C.2    Qian, H.3
  • 6
    • 85047700415 scopus 로고    scopus 로고
    • Reconstitution of coupled fumarate respiration in liposomes by incorporating the electron transport enzymes isolated from Wolinella succinogenes
    • Biel, S., J. Simon, R. Gross, T. Ruiz, M. Ruitenberg, and A. Kroger. 2002. Reconstitution of coupled fumarate respiration in liposomes by incorporating the electron transport enzymes isolated from Wolinella succinogenes. Eur. J. Biochem. 269:1974-1983.
    • (2002) Eur. J. Biochem. , vol.269 , pp. 1974-1983
    • Biel, S.1    Simon, J.2    Gross, R.3    Ruiz, T.4    Ruitenberg, M.5    Kroger, A.6
  • 7
    • 0030804853 scopus 로고    scopus 로고
    • Flux analysis of underdetermined metabolic networks: The quest for the missing constraints
    • Bonarius, H. P. J., G. Schmid, and J. Tramper. 1997. Flux analysis of underdetermined metabolic networks: the quest for the missing constraints. Trends Biotechnol. 15:308-314.
    • (1997) Trends Biotechnol. , vol.15 , pp. 308-314
    • Bonarius, H.P.J.1    Schmid, G.2    Tramper, J.3
  • 8
    • 0037127004 scopus 로고    scopus 로고
    • Electrode-reducing microorganisms that harvest energy from marine sediments
    • Bond, D. R., D. E. Holmes, L. M. Tender, and D. R. Lovley. 2002. Electrode-reducing microorganisms that harvest energy from marine sediments. Science 295:483-485.
    • (2002) Science , vol.295 , pp. 483-485
    • Bond, D.R.1    Holmes, D.E.2    Tender, L.M.3    Lovley, D.R.4
  • 9
    • 0037337606 scopus 로고    scopus 로고
    • Electricity production by Geobacter sulfurreducens attached to electrodes
    • Bond, D. R., and D. R. Lovley. 2003. Electricity production by Geobacter sulfurreducens attached to electrodes. Appl. Environ. Microbiol. 69:1548-1555.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1548-1555
    • Bond, D.R.1    Lovley, D.R.2
  • 10
    • 1242274402 scopus 로고    scopus 로고
    • Flux coupling analysis of genome-scale metabolic network reconstructions
    • Burgard, A. P., E. V. Nikolaev, C. H. Schilling, and C. D. Maranas. 2004. Flux coupling analysis of genome-scale metabolic network reconstructions. Genome Res. 14:301-312.
    • (2004) Genome Res. , vol.14 , pp. 301-312
    • Burgard, A.P.1    Nikolaev, E.V.2    Schilling, C.H.3    Maranas, C.D.4
  • 11
    • 30744454041 scopus 로고    scopus 로고
    • Genetic characterization of a single bifunctional enzyme for fumarate reduction and succinate oxidation in Geobacter sulfurreducens and engineering of fumarate reduction in Geobacter metallireducens
    • Butler, J. E., R. H. Glaven, A. Esteve-Nunez, C. Nunez, E. S. Shelobolina, D. R. Bond, and D. R. Lovley. 2006. Genetic characterization of a single bifunctional enzyme for fumarate reduction and succinate oxidation in Geobacter sulfurreducens and engineering of fumarate reduction in Geobacter metallireducens. J. Bacteriol. 188:450-455.
    • (2006) J. Bacteriol. , vol.188 , pp. 450-455
    • Butler, J.E.1    Glaven, R.H.2    Esteve-Nunez, A.3    Nunez, C.4    Shelobolina, E.S.5    Bond, D.R.6    Lovley, D.R.7
  • 12
    • 0028050079 scopus 로고
    • Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism
    • Caccavo, F., Jr., D. J. Lonergan, D. R. Lovley, M. Davis, J. F. Stolz, and M. J. McInerney. 1994. Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism. Appl. Environ. Microbiol. 60:3752-3759.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 3752-3759
    • Caccavo Jr., F.1    Lonergan, D.J.2    Lovley, D.R.3    Davis, M.4    Stolz, J.F.5    McInerney, M.J.6
  • 13
    • 0025832543 scopus 로고
    • Acetate catabolism in the dissimilatory iron-reducing isolate GS-15
    • Champine, J. E., and S. Goodwin. 1991. Acetate catabolism in the dissimilatory iron-reducing isolate GS-15. J. Bacteriol. 173:2704-2706.
    • (1991) J. Bacteriol. , vol.173 , pp. 2704-2706
    • Champine, J.E.1    Goodwin, S.2
  • 14
    • 0034212464 scopus 로고    scopus 로고
    • Electron transfer in the dissimilatory iron-reducing bacterium Geobacter metallireducens
    • Champine, J. E., B. Underhill, J. M. Johnston, W. W. Lilly, and S. Goodwin. 2000. Electron transfer in the dissimilatory iron-reducing bacterium Geobacter metallireducens. Anaerobe 6:187-196.
    • (2000) Anaerobe , vol.6 , pp. 187-196
    • Champine, J.E.1    Underhill, B.2    Johnston, J.M.3    Lilly, W.W.4    Goodwin, S.5
  • 15
    • 0037129202 scopus 로고    scopus 로고
    • Geobacter metallireducens accesses insoluble Fe(III) oxide by chemotaxis
    • Childers, S. E., S. Ciufo, and D. R. Lovley. 2002. Geobacter metallireducens accesses insoluble Fe(III) oxide by chemotaxis. Nature 416:767-769.
    • (2002) Nature , vol.416 , pp. 767-769
    • Childers, S.E.1    Ciufo, S.2    Lovley, D.R.3
  • 17
    • 0036324056 scopus 로고    scopus 로고
    • High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates
    • Connon, S. A., and S. J. Giovannoni. 2002. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68:3878-3885.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3878-3885
    • Connon, S.A.1    Giovannoni, S.J.2
  • 19
    • 2342553511 scopus 로고    scopus 로고
    • Identification of an uptake hydrogenase required for hydrogen-dependent reduction of Fe(III) and other electron acceptors by Geobacter sulfurreducens
    • Coppi, M. V., R. A. O'Neil, and D. R. Lovley. 2004. Identification of an uptake hydrogenase required for hydrogen-dependent reduction of Fe(III) and other electron acceptors by Geobacter sulfurreducens. J. Bacteriol. 186: 3022-3028.
    • (2004) J. Bacteriol. , vol.186 , pp. 3022-3028
    • Coppi, M.V.1    O'Neil, R.A.2    Lovley, D.R.3
  • 20
    • 0031745322 scopus 로고    scopus 로고
    • Growth of Geobacter sulfurreducens with acetate in syntrophic cooperation with hydrogen-oxidizing anaerobic partners
    • Cord-Ruwisch, R., D. R. Lovley, and B. Schink. 1998. Growth of Geobacter sulfurreducens with acetate in syntrophic cooperation with hydrogen-oxidizing anaerobic partners. Appl. Environ. Microbiol. 64:2232-2236.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2232-2236
    • Cord-Ruwisch, R.1    Lovley, D.R.2    Schink, B.3
  • 22
    • 0002961439 scopus 로고    scopus 로고
    • Tricarboxylic acid cycle and glyoxalate bypass
    • F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.). ASM Press, Washington, D.C.
    • Cronan, J. E., and D. Laporte. 1996. Tricarboxylic acid cycle and glyoxalate bypass, p. 189-198. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology, 2nd Ed. , pp. 189-198
    • Cronan, J.E.1    Laporte, D.2
  • 23
    • 0033107836 scopus 로고    scopus 로고
    • Classification and sensitivity analysis of a proposed primary metabolic reaction network for Streptomyces lividans
    • Daae, E. B., and A. P. Ison. 1999. Classification and sensitivity analysis of a proposed primary metabolic reaction network for Streptomyces lividans. Metab. Eng. 1:153-165.
    • (1999) Metab. Eng. , vol.1 , pp. 153-165
    • Daae, E.B.1    Ison, A.P.2
  • 24
    • 3843128481 scopus 로고    scopus 로고
    • Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
    • Duarte, N. C., M. J. Herrgard, and B. Palsson. 2004. Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. Genome Res. 14:1298-1309.
    • (2004) Genome Res. , vol.14 , pp. 1298-1309
    • Duarte, N.C.1    Herrgard, M.J.2    Palsson, B.3
  • 25
    • 0033580813 scopus 로고    scopus 로고
    • Systems properties of the Haemophilus influenzae Rd metabolic genotype
    • Edwards, J. S., and B. O. Palsson. 1999. Systems properties of the Haemophilus influenzae Rd metabolic genotype. J. Biol. Chem. 274:17410-17416.
    • (1999) J. Biol. Chem. , vol.274 , pp. 17410-17416
    • Edwards, J.S.1    Palsson, B.O.2
  • 26
    • 2942579562 scopus 로고    scopus 로고
    • Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions
    • Edwards, J. S., and B. O. Palsson. 2000. Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions. BMC Bioinformatics 1:1.
    • (2000) BMC Bioinformatics , vol.1 , pp. 1
    • Edwards, J.S.1    Palsson, B.O.2
  • 27
    • 0034625143 scopus 로고    scopus 로고
    • The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
    • Edwards, J. S., and B. O. Palsson. 2000. The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities. Proc. Natl. Acad. Sci. USA 97:5528-5533.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 5528-5533
    • Edwards, J.S.1    Palsson, B.O.2
  • 28
    • 1942507456 scopus 로고    scopus 로고
    • Preferential reduction of Fe(III) over fumarate by Geobacter sulfurreducens
    • Esteve-Nunez, A., C. Nunez, and D. R. Lovley. 2004. Preferential reduction of Fe(III) over fumarate by Geobacter sulfurreducens. J. Bacteriol. 186:2897-2899.
    • (2004) J. Bacteriol. , vol.186 , pp. 2897-2899
    • Esteve-Nunez, A.1    Nunez, C.2    Lovley, D.R.3
  • 29
    • 17844363250 scopus 로고    scopus 로고
    • Growth of Geobacter sulfurreducens under nutrient-limiting conditions in continuous culture
    • Esteve-Nunez, A., A. Rothermich, M. Sharma, and D. R. Lovley. 2005. Growth of Geobacter sulfurreducens under nutrient-limiting conditions in continuous culture. Environ. Microbiol. 7:641-648.
    • (2005) Environ. Microbiol. , vol.7 , pp. 641-648
    • Esteve-Nunez, A.1    Rothermich, A.2    Sharma, M.3    Lovley, D.R.4
  • 30
    • 0344824417 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network
    • Famili, I., J. Forster, J. Nielsen, and B. O. Palsson. 2003. Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network. Proc. Natl. Acad. Sci. USA 100:13134-13139.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 13134-13139
    • Famili, I.1    Forster, J.2    Nielsen, J.3    Palsson, B.O.4
  • 31
    • 15744377171 scopus 로고    scopus 로고
    • Quinone reduction by Rhodothermus marinus succinate:menaquinone oxidoreductase is not stimulated by the membrane potential
    • Fernandes, A. S., A. A. Konstantinov, M. Teixeira, and M. M. Pereira. 2005. Quinone reduction by Rhodothermus marinus succinate:menaquinone oxidoreductase is not stimulated by the membrane potential. Biochem. Biophys. Res. Commun. 330:565-570.
    • (2005) Biochem. Biophys. Res. Commun. , vol.330 , pp. 565-570
    • Fernandes, A.S.1    Konstantinov, A.A.2    Teixeira, M.3    Pereira, M.M.4
  • 32
    • 70449158340 scopus 로고
    • A simple method for the isolation and purification of total lipids from animal tissues
    • Folch, J., M. Lees, and G. Sloane-Stanley. 1957. A simple method for the isolation and purification of total lipids from animal tissues. J. Biol. Chem. 226:497-509.
    • (1957) J. Biol. Chem. , vol.226 , pp. 497-509
    • Folch, J.1    Lees, M.2    Sloane-Stanley, G.3
  • 33
    • 0034637432 scopus 로고    scopus 로고
    • The respiratory complex I of bacteria, archaea, and eukarya and its module common with membrane-bound multisubunit hydrogenases
    • Friedrich, T., and D. Scheide. 2000. The respiratory complex I of bacteria, archaea, and eukarya and its module common with membrane-bound multisubunit hydrogenases. FEBS Lett. 479:1-5.
    • (2000) FEBS Lett. , vol.479 , pp. 1-5
    • Friedrich, T.1    Scheide, D.2
  • 34
    • 0033681074 scopus 로고    scopus 로고
    • Oxidation of acetate through reactions of the citric acid cycle by Geobacter sulfurreducens in pure culture and in syntrophic coculture
    • Galushko, A. S., and B. Schink. 2000. Oxidation of acetate through reactions of the citric acid cycle by Geobacter sulfurreducens in pure culture and in syntrophic coculture. Arch. Microbiol. 174:314-321.
    • (2000) Arch. Microbiol. , vol.174 , pp. 314-321
    • Galushko, A.S.1    Schink, B.2
  • 35
    • 0021847064 scopus 로고
    • Mechanism of acetate oxidation to carbon dioxide with elemental sulfur in Desulfuromonas acetoxidans
    • Gebhardt, N. A., R. K. Thauer, D. Linder, P. M. Kaulfers, and N. Pfennig. 1985. Mechanism of acetate oxidation to carbon dioxide with elemental sulfur in Desulfuromonas acetoxidans. Arch. Microbiol. 141:392-398.
    • (1985) Arch. Microbiol. , vol.141 , pp. 392-398
    • Gebhardt, N.A.1    Thauer, R.K.2    Linder, D.3    Kaulfers, P.M.4    Pfennig, N.5
  • 36
    • 0028218045 scopus 로고
    • The direction of the proton-exchange associated with the redox reactions of menaquinone during electron-transport in Wolinella succinogenes
    • Geisler, V., R. Ullmann, and A. Kroger. 1994. The direction of the proton-exchange associated with the redox reactions of menaquinone during electron-transport in Wolinella succinogenes. Biochim. Biophys. Acta-Bioenergetics 1184:219-226.
    • (1994) Biochim. Biophys. Acta-Bioenergetics , vol.1184 , pp. 219-226
    • Geisler, V.1    Ullmann, R.2    Kroger, A.3
  • 37
    • 0036081122 scopus 로고    scopus 로고
    • LIGAND: Database of chemical compounds and reactions in biological pathways
    • Goto, S., Y. Okuno, M. Hattori, T. Nishioka, and M. Kanehisa. 2002. LIGAND: database of chemical compounds and reactions in biological pathways. Nucleic Acids Res. 30:402-404.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 402-404
    • Goto, S.1    Okuno, Y.2    Hattori, M.3    Nishioka, T.4    Kanehisa, M.5
  • 38
    • 0030600143 scopus 로고    scopus 로고
    • A structural model for the membrane-integral domain of succinate:quinone oxidoreductases
    • Hagerhall, C., and L. Hederstedt. 1996. A structural model for the membrane-integral domain of succinate:quinone oxidoreductases. FEBS Lett. 389:25-31.
    • (1996) FEBS Lett. , vol.389 , pp. 25-31
    • Hagerhall, C.1    Hederstedt, L.2
  • 41
    • 0036249528 scopus 로고    scopus 로고
    • Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments
    • Holmes, D. E., K. T. Finneran, R. A. O'Neil, and D. R. Lovley. 2002. Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments. Appl. Environ. Microbiol. 68:2300-2306.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2300-2306
    • Holmes, D.E.1    Finneran, K.T.2    O'Neil, R.A.3    Lovley, D.R.4
  • 42
    • 0037052320 scopus 로고    scopus 로고
    • Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment
    • Kaeberlein, T., K. Lewis, and S. S. Epstein. 2002. Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment. Science 296:1127-1129.
    • (2002) Science , vol.296 , pp. 1127-1129
    • Kaeberlein, T.1    Lewis, K.2    Epstein, S.S.3
  • 46
    • 0034661295 scopus 로고    scopus 로고
    • Recursive MILP model for finding all the alternate optima in LP models for metabolic networks
    • Lee, S., C. Phalakornkule, M. M. Domach, and I. E. Grossmann. 2000. Recursive MILP model for finding all the alternate optima in LP models for metabolic networks. Comput. Chem. Eng. 24:711-716.
    • (2000) Comput. Chem. Eng. , vol.24 , pp. 711-716
    • Lee, S.1    Phalakornkule, C.2    Domach, M.M.3    Grossmann, I.E.4
  • 48
    • 3843070019 scopus 로고    scopus 로고
    • Geobacter sulfurreducens can grow with oxygen as a terminal electron acceptor
    • Lin, W. C., M. V. Coppi, and D. R. Lovley. 2004. Geobacter sulfurreducens can grow with oxygen as a terminal electron acceptor. Appl. Environ. Microbiol. 70:2525-2528.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2525-2528
    • Lin, W.C.1    Coppi, M.V.2    Lovley, D.R.3
  • 49
    • 0032786250 scopus 로고    scopus 로고
    • The periplasmic 9.6-kilodalton c-type cytochrome of Geobacter sulfurreducens is not an electron shuttle to Fe(III)
    • Lloyd, J. R., E. L. Blunt-Harris, and D. R. Lovley. 1999. The periplasmic 9.6-kilodalton c-type cytochrome of Geobacter sulfurreducens is not an electron shuttle to Fe(III). J. Bacteriol. 181:7647-7649.
    • (1999) J. Bacteriol. , vol.181 , pp. 7647-7649
    • Lloyd, J.R.1    Blunt-Harris, E.L.2    Lovley, D.R.3
  • 51
    • 0001299030 scopus 로고    scopus 로고
    • Bioremediation of radioactive metals
    • D. R. Lovley (ed.). ASM Press, Washington, D.C.
    • Lloyd, J. R., and L. E. Macaskie. 2000. Bioremediation of radioactive metals, p. 272-327. In D. R. Lovley (ed.), Environmental microbe-metal interactions. ASM Press, Washington, D.C.
    • (2000) Environmental Microbe-metal Interactions , pp. 272-327
    • Lloyd, J.R.1    Macaskie, L.E.2
  • 52
    • 0033827440 scopus 로고    scopus 로고
    • Direct and Fe(II)-mediated reduction of technetium by Fe(III)-reducing bacteria
    • Lloyd, J. R., V. A. Sole, C. V. Van Praagh, and D. R. Lovley. 2000. Direct and Fe(II)-mediated reduction of technetium by Fe(III)-reducing bacteria. Appl. Environ. Microbiol. 66:3743-3749.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3743-3749
    • Lloyd, J.R.1    Sole, V.A.2    Van Praagh, C.V.3    Lovley, D.R.4
  • 53
    • 0025890073 scopus 로고
    • Dissimilatory Fe(III) and Mn(IV) reduction
    • Lovley, D. R. 1991. Dissimilatory Fe(III) and Mn(IV) reduction. Microbiol. Rev. 55:259-287.
    • (1991) Microbiol. Rev. , vol.55 , pp. 259-287
    • Lovley, D.R.1
  • 54
    • 2142763872 scopus 로고    scopus 로고
    • Cleaning up with genomics: Applying molecular biology to bioremediation
    • Lovley, D. R. 2003. Cleaning up with genomics: applying molecular biology to bioremediation. Nat. Rev. Microbiol. 1:35-44.
    • (2003) Nat. Rev. Microbiol. , vol.1 , pp. 35-44
    • Lovley, D.R.1
  • 55
    • 0002628538 scopus 로고    scopus 로고
    • Influence of dissimilatory metal reduction on the fate of organic and metal contaminants in the subsurface
    • Lovley, D. R., and R. T. Anderson. 2000. Influence of dissimilatory metal reduction on the fate of organic and metal contaminants in the subsurface. Hydogeol. J. 8:77-88.
    • (2000) Hydogeol. J. , vol.8 , pp. 77-88
    • Lovley, D.R.1    Anderson, R.T.2
  • 57
    • 0027523571 scopus 로고
    • Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals
    • Lovley, D. R., S. J. Giovannoni, D. C. White, J. E. Champine, E. J. Phillips, Y. A. Gorby, and S. Goodwin. 1993. Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals. Arch. Microbiol. 159:336-344.
    • (1993) Arch. Microbiol. , vol.159 , pp. 336-344
    • Lovley, D.R.1    Giovannoni, S.J.2    White, D.C.3    Champine, J.E.4    Phillips, E.J.5    Gorby, Y.A.6    Goodwin, S.7
  • 61
    • 1642457253 scopus 로고    scopus 로고
    • The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
    • Mahadevan, R., and C. H. Schilling. 2003. The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. Metab. Eng. 5:264-276.
    • (2003) Metab. Eng. , vol.5 , pp. 264-276
    • Mahadevan, R.1    Schilling, C.H.2
  • 63
    • 4644245648 scopus 로고    scopus 로고
    • Shewanella oneidensis MR-1 restores menaquinone synthesis to a menaquinone-negative mutant
    • Myers, C. R., and J. A. Myers. 2004. Shewanella oneidensis MR-1 restores menaquinone synthesis to a menaquinone-negative mutant. Appl. Environ. Microbiol. 70:5415-5425.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 5415-5425
    • Myers, C.R.1    Myers, J.A.2
  • 65
    • 0002437481 scopus 로고    scopus 로고
    • Chemical composition of Escherichia coli
    • F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.). ASM Press, Washington, D.C.
    • Neidhardt, F., and H. E. Umbarger. 1996. Chemical composition of Escherichia coli, p. 13-16. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology, 2nd Ed. , pp. 13-16
    • Neidhardt, F.1    Umbarger, H.E.2
  • 66
    • 0001311831 scopus 로고    scopus 로고
    • Growth yield and energy distribution
    • F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.). ASM Press, Washington, D.C.
    • Neijssel, O. M., M. J. Teixeria de Mattos, and D. W. Tempest. 1996. Growth yield and energy distribution, p. 1683-1692. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology, 2nd Ed. , pp. 1683-1692
    • Neijssel, O.M.1    Teixeria De Mattos, M.J.2    Tempest, D.W.3
  • 67
    • 0036244691 scopus 로고    scopus 로고
    • Mechanisms for accessing insoluble Fe(III) oxide during dissimilatory Fe(III) reduction by Geothrix fermentans
    • Nevin, K. P., and D. R. Lovley. 2002. Mechanisms for accessing insoluble Fe(III) oxide during dissimilatory Fe(III) reduction by Geothrix fermentans. Appl. Environ. Microbiol. 68:2294-2299.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2294-2299
    • Nevin, K.P.1    Lovley, D.R.2
  • 68
    • 0036252368 scopus 로고    scopus 로고
    • Mechanisms for Fe(III) oxide reduction in sedimentary environments
    • Nevin, K. P., and D. R. Lovley. 2002. Mechanisms for Fe(III) oxide reduction in sedimentary environments. Geomicrobiol. J. 19:141-159.
    • (2002) Geomicrobiol. J. , vol.19 , pp. 141-159
    • Nevin, K.P.1    Lovley, D.R.2
  • 69
    • 0034604081 scopus 로고    scopus 로고
    • A role for excreted quinones in extracellular electron transfer
    • Newman, D. K., and R. Kolter. 2000. A role for excreted quinones in extracellular electron transfer. Nature 405:94-97.
    • (2000) Nature , vol.405 , pp. 94-97
    • Newman, D.K.1    Kolter, R.2
  • 70
    • 2442638056 scopus 로고    scopus 로고
    • Vanadium respiration by Geobacter metallireducens: Novel strategy for in situ removal of vanadium from groundwater
    • Ortiz-Bernad, I., R. T. Anderson, H. A. Vrionis, and D. R. Lovley. 2004. Vanadium respiration by Geobacter metallireducens: novel strategy for in situ removal of vanadium from groundwater. Appl. Environ. Microbiol. 70:3091-3095.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 3091-3095
    • Ortiz-Bernad, I.1    Anderson, R.T.2    Vrionis, H.A.3    Lovley, D.R.4
  • 72
    • 0022628946 scopus 로고
    • ATP driven succinate oxidation in the catabolism of Desulfuromonas acetoxidans
    • Paulsen, J., A. Kroger, and R. K. Thauer. 1986. ATP driven succinate oxidation in the catabolism of Desulfuromonas acetoxidans. Arch. Microbiol. 144:78-83.
    • (1986) Arch. Microbiol. , vol.144 , pp. 78-83
    • Paulsen, J.1    Kroger, A.2    Thauer, R.K.3
  • 73
    • 43049089438 scopus 로고
    • The maintenance energy of bacteria in growing cultures
    • Pirt, S. J. 1965. The maintenance energy of bacteria in growing cultures. Proc. R. Soc. London 163:224-231.
    • (1965) Proc. R. Soc. London , vol.163 , pp. 224-231
    • Pirt, S.J.1
  • 74
    • 0343035686 scopus 로고    scopus 로고
    • Stoichiometric model of Escherichia coli metabolism: Incorporation of growth-rate dependent biomass composition and mechanistic energy requirements
    • Pramanik, J., and J. D. Keasling. 1997. Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements. Biotechnol. Bioeng. 56:398-421.
    • (1997) Biotechnol. Bioeng. , vol.56 , pp. 398-421
    • Pramanik, J.1    Keasling, J.D.2
  • 75
    • 0032552815 scopus 로고    scopus 로고
    • Effect of Escherichia coli biomass composition on central metabolic fluxes predicted by a stoichiometric model
    • Pramanik, J., and J. D. Keasling. 1998. Effect of Escherichia coli biomass composition on central metabolic fluxes predicted by a stoichiometric model. Biotechnol. Bioeng. 60:230-238.
    • (1998) Biotechnol. Bioeng. , vol.60 , pp. 230-238
    • Pramanik, J.1    Keasling, J.D.2
  • 76
  • 77
    • 0037385718 scopus 로고    scopus 로고
    • Genome-scale microbial in silico models: The constraints-based approach
    • Price, N. D., J. A. Papin, C. H. Schilling, and B. Palsson. 2003. Genome-scale microbial in silico models: the constraints-based approach. Trends Biotechnol. 21:162-169.
    • (2003) Trends Biotechnol. , vol.21 , pp. 162-169
    • Price, N.D.1    Papin, J.A.2    Schilling, C.H.3    Palsson, B.4
  • 78
    • 0037043731 scopus 로고    scopus 로고
    • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
    • Rappe, M. S., S. A. Connon, K. L. Vergin, and S. J. Giovannoni. 2002. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418:630-633.
    • (2002) Nature , vol.418 , pp. 630-633
    • Rappe, M.S.1    Connon, S.A.2    Vergin, K.L.3    Giovannoni, S.J.4
  • 79
    • 0344328817 scopus 로고    scopus 로고
    • Escherichia coli iJR904: An expanded genome-scale model of E. coli K-12
    • Reed, J. L., T. D. Vo, C. H. Schilling, and B. Palsson. 2003. Escherichia coli iJR904: an expanded genome-scale model of E. coli K-12. Genome Biol. 4:R54.1-R54.12.
    • (2003) Genome Biol. , vol.4
    • Reed, J.L.1    Vo, T.D.2    Schilling, C.H.3    Palsson, B.4
  • 81
    • 18744382447 scopus 로고    scopus 로고
    • Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys
    • Sait, M., P. Hugenholtz, and P. H. Janssen. 2002. Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ. Microbiol. 4:654-666.
    • (2002) Environ. Microbiol. , vol.4 , pp. 654-666
    • Sait, M.1    Hugenholtz, P.2    Janssen, P.H.3
  • 83
    • 70349368703 scopus 로고
    • Determination of nucleic acids in tissues
    • Schneider, W. C. 1957. Determination of nucleic acids in tissues. Methods Enzymol. 3:680-684.
    • (1957) Methods Enzymol. , vol.3 , pp. 680-684
    • Schneider, W.C.1
  • 84
    • 0034819978 scopus 로고    scopus 로고
    • Generation of a proton potential by succinate dehydrogenase of Bacillus subtilis functioning as a fumarate reductase
    • Schnorpfeil, M., I. G. Janausch, S. Biel, A. Kroger, and G. Unden. 2001. Generation of a proton potential by succinate dehydrogenase of Bacillus subtilis functioning as a fumarate reductase. Eur. J. Biochem. 268:3069-3074.
    • (2001) Eur. J. Biochem. , vol.268 , pp. 3069-3074
    • Schnorpfeil, M.1    Janausch, I.G.2    Biel, S.3    Kroger, A.4    Unden, G.5
  • 86
    • 0033808726 scopus 로고    scopus 로고
    • Transport of C(4)-dicarboxylates in Wolinella succinogenes
    • Ullmann, R., R. Gross, J. Simon, G. Unden, and A. Kroger. 2000. Transport of C(4)-dicarboxylates in Wolinella succinogenes. J. Bacteriol. 182: 5757-5764.
    • (2000) J. Bacteriol. , vol.182 , pp. 5757-5764
    • Ullmann, R.1    Gross, R.2    Simon, J.3    Unden, G.4    Kroger, A.5
  • 87
    • 0028108519 scopus 로고
    • Metabolic flux balancing: Basic concepts, scientific and practical use
    • Varma, A., and B. Palsson. 1994. Metabolic flux balancing: basic concepts, scientific and practical use. Bio/Technology 12:994-998.
    • (1994) Bio/Technology , vol.12 , pp. 994-998
    • Varma, A.1    Palsson, B.2
  • 88
    • 0031889351 scopus 로고    scopus 로고
    • Anaerobic benzene degradation in petroleum-contaminated aquifer sediments after inoculation with a benzene-oxidizing enrichment
    • Weiner, J. M., and D. R. Lovley. 1998. Anaerobic benzene degradation in petroleum-contaminated aquifer sediments after inoculation with a benzene-oxidizing enrichment. Appl. Environ. Microbiol. 64:775-778.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 775-778
    • Weiner, J.M.1    Lovley, D.R.2
  • 89
    • 0037418550 scopus 로고    scopus 로고
    • The proton-translocating NADH-quinone oxidoreductase in the respiratory chain: The secret unlocked
    • Yagi, T., and A. Matsuno-Yagi. 2003. The proton-translocating NADH-quinone oxidoreductase in the respiratory chain: the secret unlocked. Biochemistry 42:2266-2274.
    • (2003) Biochemistry , vol.42 , pp. 2266-2274
    • Yagi, T.1    Matsuno-Yagi, A.2
  • 91
    • 14544286855 scopus 로고    scopus 로고
    • The selective cause of an ancient adaptation
    • Zhu, G., G. B. Golding, and A. M. Dean. 2005. The selective cause of an ancient adaptation. Science 307:1279-1282.
    • (2005) Science , vol.307 , pp. 1279-1282
    • Zhu, G.1    Golding, G.B.2    Dean, A.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.