-
1
-
-
33746655320
-
Environmental, economic, and energetic costs and benefits of biodiesel and ethanol biofuels
-
Hill, J., Nelson, E., Tilman, D., Polasky, S. &Tiffany, D. Environmental, economic, and energetic costs and benefits of biodiesel and ethanol biofuels. Proc. Natl. Acad. Sci. USA 103, 11206-11210 (2006).
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 11206-11210
-
-
Hill, J.1
Nelson, E.2
Tilman, D.3
Polasky, S.4
Tiffany, D.5
-
2
-
-
84922021209
-
Oleaginous yeasts for biodiesel: Current and future trends in biology and production
-
Sitepu, I.R. et al. Oleaginous yeasts for biodiesel: current and future trends in biology and production. Biotechnol. Adv. 32, 1336-1360 (2014).
-
(2014)
Biotechnol. Adv.
, vol.32
, pp. 1336-1360
-
-
Sitepu, I.R.1
-
3
-
-
84918530991
-
Microbial lipid-based lignocellulosic biorefinery: Feasibility and challenges
-
Jin, M. et al. Microbial lipid-based lignocellulosic biorefinery: feasibility and challenges. Trends Biotechnol. 33, 43-54 (2015).
-
(2015)
Trends Biotechnol.
, vol.33
, pp. 43-54
-
-
Jin, M.1
-
4
-
-
70350205608
-
Yarrowia lipolytica as a model for bio-oil production
-
Beopoulos, A. et al. Yarrowia lipolytica as a model for bio-oil production. Prog. Lipid Res. 48, 375-387 (2009).
-
(2009)
Prog. Lipid Res.
, vol.48
, pp. 375-387
-
-
Beopoulos, A.1
-
5
-
-
84936994389
-
Metabolic engineering of yeast to produce fatty acid-derived biofuels: Bottlenecks and solutions
-
Sheng, J. &Feng, X. Metabolic engineering of yeast to produce fatty acid-derived biofuels: bottlenecks and solutions. Front. Microbiol. 6, 554 (2015).
-
(2015)
Front. Microbiol.
, vol.6
, pp. 554
-
-
Sheng, J.1
Feng, X.2
-
6
-
-
84908294926
-
Yarrowia lipolytica as an oleaginous cell factory platform for the production of fatty acid-based biofuel and bioproducts
-
Abghari, A. &Chen, S. Yarrowia lipolytica as an oleaginous cell factory platform for the production of fatty acid-based biofuel and bioproducts. Front. Energy Res. 2, 21 (2014).
-
(2014)
Front. Energy Res.
, vol.2
, pp. 21
-
-
Abghari, A.1
Chen, S.2
-
7
-
-
84930615716
-
Unraveling fatty acid transport and activation mechanisms in Yarrowia lipolytica
-
Dulermo, R., Gamboa-Meléndez, H., Ledesma-Amaro, R., Thévenieau, F. &Nicaud, J.M.Unraveling fatty acid transport and activation mechanisms in Yarrowia lipolytica. Biochim. Biophys. Acta 1851, 1202-1217 (2015).
-
(2015)
Biochim. Biophys. Acta
, vol.1851
, pp. 1202-1217
-
-
Dulermo, R.1
Gamboa-Meléndez, H.2
Ledesma-Amaro, R.3
Thévenieau, F.4
Nicaud, J.M.5
-
8
-
-
80052038417
-
Involvement of the G3P shuttle and β-oxidation pathway in the control of TAG synthesis and lipid accumulation in Yarrowia lipolytica
-
Dulermo, T. &Nicaud, J.M. Involvement of the G3P shuttle and β-oxidation pathway in the control of TAG synthesis and lipid accumulation in Yarrowia lipolytica. Metab. Eng. 13, 482-491 (2011).
-
(2011)
Metab. Eng.
, vol.13
, pp. 482-491
-
-
Dulermo, T.1
Nicaud, J.M.2
-
9
-
-
84870674137
-
Engineering the push and pull of lipid biosynthesis in oleaginous yeast Yarrowia lipolytica for biofuel production
-
Tai, M. &Stephanopoulos, G. Engineering the push and pull of lipid biosynthesis in oleaginous yeast Yarrowia lipolytica for biofuel production. Metab. Eng. 15, 1-9 (2013).
-
(2013)
Metab. Eng.
, vol.15
, pp. 1-9
-
-
Tai, M.1
Stephanopoulos, G.2
-
10
-
-
84884828047
-
Characterization of the two intracellular lipases of Y. Lipolytica encoded by TGL3 and TGL4 genes: New insights into the role of intracellular lipases and lipid body organization
-
Dulermo, T. et al. Characterization of the two intracellular lipases of Y. lipolytica encoded by TGL3 and TGL4 genes: new insights into the role of intracellular lipases and lipid body organisation. Biochim. Biophys. Acta. 1831, 1486-1495 (2013).
-
(2013)
Biochim. Biophys. Acta.
, vol.1831
, pp. 1486-1495
-
-
Dulermo, T.1
-
11
-
-
84892840633
-
Harnessing Yarrowia lipolytica lipogenesis to create a platform for lipid and biofuel production
-
Blazeck, J. et al. Harnessing Yarrowia lipolytica lipogenesis to create a platform for lipid and biofuel production. Nat. Commun. 5, 3131 (2014).
-
(2014)
Nat. Commun.
, vol.5
, pp. 3131
-
-
Blazeck, J.1
-
12
-
-
57449110525
-
Control of lipid accumulation in the yeast Yarrowia lipolytica
-
Beopoulos, A. et al. Control of lipid accumulation in the yeast Yarrowia lipolytica. Appl. Environ. Microbiol. 74, 7779-7789 (2008).
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 7779-7789
-
-
Beopoulos, A.1
-
13
-
-
84883802093
-
Production of omega-3 eicosapentaenoic acid by metabolic engineering of Yarrowia lipolytica
-
Xue, Z. et al. Production of omega-3 eicosapentaenoic acid by metabolic engineering of Yarrowia lipolytica. Nat. Biotechnol. 31, 734-740 (2013).
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 734-740
-
-
Xue, Z.1
-
14
-
-
84924657793
-
Engineering lipid overproduction in the oleaginous yeast Yarrowia lipolytica
-
Qiao, K. et al. Engineering lipid overproduction in the oleaginous yeast Yarrowia lipolytica. Metab. Eng. 29, 56-65 (2015).
-
(2015)
Metab. Eng.
, vol.29
, pp. 56-65
-
-
Qiao, K.1
-
15
-
-
84929314719
-
The oxidative pentose phosphate pathway is the primary source of NADPH for lipid overproduction from glucose in Yarrowia lipolytica
-
Wasylenko, T.M., Ahn, W.S. &Stephanopoulos, G. The oxidative pentose phosphate pathway is the primary source of NADPH for lipid overproduction from glucose in Yarrowia lipolytica. Metab. Eng. 30, 27-39 (2015).
-
(2015)
Metab. Eng.
, vol.30
, pp. 27-39
-
-
Wasylenko, T.M.1
Ahn, W.S.2
Stephanopoulos, G.3
-
16
-
-
80051941601
-
Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals
-
Dellomonaco, C., Clomburg, J.M., Miller, E.N. &Gonzalez, R. Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals. Nature 476, 355-359 (2011).
-
(2011)
Nature
, vol.476
, pp. 355-359
-
-
Dellomonaco, C.1
Clomburg, J.M.2
Miller, E.N.3
Gonzalez, R.4
-
17
-
-
84877804801
-
Modular optimization of multi-gene pathways for fatty acids production in E
-
Xu, P. et al. Modular optimization of multi-gene pathways for fatty acids production in E. coli. Nat. Commun. 4, 1409 (2013).
-
(2013)
Coli. Nat. Commun.
, vol.4
, pp. 1409
-
-
Xu, P.1
-
18
-
-
34248570203
-
High-density cultivation of oleaginous yeast Rhodosporidium toruloides Y4 in fed-batch culture
-
Li, Y.H., Zhao, Z.B. &Bai, F.W. High-density cultivation of oleaginous yeast Rhodosporidium toruloides Y4 in fed-batch culture. Enzyme Microb. Technol. 41, 312-317 (2007).
-
(2007)
Enzyme Microb. Technol.
, vol.41
, pp. 312-317
-
-
Li, Y.H.1
Zhao, Z.B.2
Bai, F.W.3
-
19
-
-
1342325419
-
The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli
-
Sauer, U., Canonaco, F., Heri, S., Perrenoud, A. &Fischer, E. The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli. J. Biol. Chem. 279, 6613-6619 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 6613-6619
-
-
Sauer, U.1
Canonaco, F.2
Heri, S.3
Perrenoud, A.4
Fischer, E.5
-
20
-
-
0036409043
-
Expression, purification, and characterization of recombinant nonphosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase from Clostridium acetobutylicum
-
Iddar, A., Valverde, F., Serrano, A. &Soukri, A. Expression, purification, and characterization of recombinant nonphosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase from Clostridium acetobutylicum. Protein Expr. Purif. 25, 519-526 (2002).
-
(2002)
Protein Expr. Purif.
, vol.25
, pp. 519-526
-
-
Iddar, A.1
Valverde, F.2
Serrano, A.3
Soukri, A.4
-
21
-
-
57049150799
-
Replacing Escherichia coli NAD-dependent glyceraldehyde 3-phosphate dehydrogenase (GAPDH) with a NADP-dependent enzyme from Clostridium acetobutylicum facilitates NADPH dependent pathways
-
Martínez, I., Zhu, J., Lin, H., Bennett, G.N. &San, K.Y. Replacing Escherichia coli NAD-dependent glyceraldehyde 3-phosphate dehydrogenase (GAPDH) with a NADP-dependent enzyme from Clostridium acetobutylicum facilitates NADPH dependent pathways. Metab. Eng. 10, 352-359 (2008).
-
(2008)
Metab. Eng.
, vol.10
, pp. 352-359
-
-
Martínez, I.1
Zhu, J.2
Lin, H.3
Bennett, G.N.4
San, K.Y.5
-
22
-
-
0037137187
-
Identification of the first fungal NADP-GAPDH from Kluyveromyces lactis
-
Verho, R. et al. Identification of the first fungal NADP-GAPDH from Kluyveromyces lactis. Biochemistry 41, 13833-13838 (2002).
-
(2002)
Biochemistry
, vol.41
, pp. 13833-13838
-
-
Verho, R.1
-
23
-
-
84887316623
-
Regulatory properties of malic enzyme in the oleaginous yeast, Yarrowia lipolytica, and its non-involvement in lipid accumulation
-
Zhang, H. et al. Regulatory properties of malic enzyme in the oleaginous yeast, Yarrowia lipolytica, and its non-involvement in lipid accumulation. Biotechnol. Lett. 35, 2091-2098 (2013).
-
(2013)
Biotechnol. Lett.
, vol.35
, pp. 2091-2098
-
-
Zhang, H.1
-
24
-
-
84930224945
-
Characterization of malic enzyme and the regulation of its activity and metabolic engineering on lipid production
-
Liang, Y.J. &Jiang, J.G. Characterization of malic enzyme and the regulation of its activity and metabolic engineering on lipid production. RSC Adv. 5, 45558-45570 (2015).
-
(2015)
RSC Adv.
, vol.5
, pp. 45558-45570
-
-
Liang, Y.J.1
Jiang, J.G.2
-
25
-
-
84878011874
-
Overexpression of malic enzyme (ME) of Mucor circinelloides improved lipid accumulation in engineered Rhodotorula glutinis
-
Li, Z. et al. Overexpression of malic enzyme (ME) of Mucor circinelloides improved lipid accumulation in engineered Rhodotorula glutinis. Appl. Microbiol. Biotechnol. 97, 4927-4936 (2013).
-
(2013)
Appl. Microbiol. Biotechnol.
, vol.97
, pp. 4927-4936
-
-
Li, Z.1
-
26
-
-
0031024882
-
Malic enzyme: Its purification and characterization from Mucor circinelloides and occurrence in other oleaginous fungi
-
Savitha, J., Wynn, J.P. &Ratledge, C. Malic enzyme: Its purification and characterization from Mucor circinelloides and occurrence in other oleaginous fungi. World J. Microbiol. Biotechnol. 13, 7-9 (1997).
-
(1997)
World J. Microbiol. Biotechnol.
, vol.13
, pp. 7-9
-
-
Savitha, J.1
Wynn, J.P.2
Ratledge, C.3
-
27
-
-
84948130379
-
Engineering Rhodosporidium toruloides for increased lipid production
-
Zhang, S. et al. Engineering Rhodosporidium toruloides for increased lipid production. Biotechnol. Bioeng. 113, 1056-1066 (2016).
-
(2016)
Biotechnol. Bioeng.
, vol.113
, pp. 1056-1066
-
-
Zhang, S.1
-
28
-
-
23844432588
-
Cloning and characterization of the gene encoding phosphoketolase in Leuconostoc mesenteroides isolated from kimchi
-
Lee, J.M. et al. Cloning and characterization of the gene encoding phosphoketolase in Leuconostoc mesenteroides isolated from kimchi. Biotechnol. Lett. 27, 853-858 (2005).
-
(2005)
Biotechnol. Lett.
, vol.27
, pp. 853-858
-
-
Lee, J.M.1
-
31
-
-
84869039746
-
Enhancing fatty acid production by the expression of the regulatory transcription factor FadR
-
Zhang, F. et al. Enhancing fatty acid production by the expression of the regulatory transcription factor FadR. Metab. Eng. 14, 653-660 (2012).
-
(2012)
Metab. Eng.
, vol.14
, pp. 653-660
-
-
Zhang, F.1
-
32
-
-
84920135708
-
Overproduction and secretion of free fatty acids through disrupted neutral lipid recycle in Saccharomyces cerevisiae
-
Leber, C., Polson, B., Fernandez-Moya, R. &Da Silva, N.A. Overproduction and secretion of free fatty acids through disrupted neutral lipid recycle in Saccharomyces cerevisiae. Metab. Eng. 28, 54-62 (2015).
-
(2015)
Metab. Eng.
, vol.28
, pp. 54-62
-
-
Leber, C.1
Polson, B.2
Fernandez-Moya, R.3
Da Silva, N.A.4
-
33
-
-
84891829362
-
Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid-derived biofuels and chemicals
-
Runguphan, W. &Keasling, J.D. Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid-derived biofuels and chemicals. Metab. Eng. 21, 103-113 (2014).
-
(2014)
Metab. Eng.
, vol.21
, pp. 103-113
-
-
Runguphan, W.1
Keasling, J.D.2
-
34
-
-
84924176808
-
An evolutionary metabolic engineering approach for enhancing lipogenesis in Yarrowia lipolytica
-
Liu, L., Pan, A., Spofford, C., Zhou, N. &Alper, H.S. An evolutionary metabolic engineering approach for enhancing lipogenesis in Yarrowia lipolytica. Metab. Eng. 29, 36-45 (2015).
-
(2015)
Metab. Eng.
, vol.29
, pp. 36-45
-
-
Liu, L.1
Pan, A.2
Spofford, C.3
Zhou, N.4
Alper, H.S.5
-
35
-
-
84938932084
-
Surveying the lipogenesis landscape in Yarrowia lipolytica through understanding the function of a Mga2p regulatory protein mutant
-
Liu, L. et al. Surveying the lipogenesis landscape in Yarrowia lipolytica through understanding the function of a Mga2p regulatory protein mutant. Metab. Eng. 31, 102-111 (2015).
-
(2015)
Metab. Eng.
, vol.31
, pp. 102-111
-
-
Liu, L.1
-
36
-
-
84961588340
-
Functional overexpression and characterization of lipogenesis-related genes in the oleaginous yeast Yarrowia lipolytica
-
Silverman, A.M., Qiao, K., Xu, P. &Stephanopoulos, G. Functional overexpression and characterization of lipogenesis-related genes in the oleaginous yeast Yarrowia lipolytica. Appl. Microbiol. Biotechnol. 100, 3781-3798 (2016).
-
(2016)
Appl. Microbiol. Biotechnol.
, vol.100
, pp. 3781-3798
-
-
Silverman, A.M.1
Qiao, K.2
Xu, P.3
Stephanopoulos, G.4
-
37
-
-
84988727887
-
Metabolic engineering of the oleaginous yeast Rhodosporidium toruloides IFO0880 for lipid overproduction during high-density fermentation
-
Zhang, S., Ito, M., Skerker, J.M., Arkin, A.P. &Rao, C.V. Metabolic engineering of the oleaginous yeast Rhodosporidium toruloides IFO0880 for lipid overproduction during high-density fermentation. Appl. Microbiol. Biotechnol. 100, 9393-9405 (2016).
-
(2016)
Appl. Microbiol. Biotechnol.
, vol.100
, pp. 9393-9405
-
-
Zhang, S.1
Ito, M.2
Skerker, J.M.3
Arkin, A.P.4
Rao, C.V.5
-
38
-
-
34547579086
-
OPTIMIZER: A web server for optimizing the codon usage of DNA sequences
-
Puigbò, P., Guzmán, E., Romeu, A. &Garcia-Vallvé, S. OPTIMIZER: a web server for optimizing the codon usage of DNA sequences. Nucleic Acids Res. 35, W126-W131 (2007).
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W126-W131
-
-
Puigbò, P.1
Guzmán, E.2
Romeu, A.3
Garcia-Vallvé, S.4
-
39
-
-
84903743153
-
A de novo NADPH generation pathway for improving lysine production of Corynebacterium glutamicum by rational design of the coenzyme specificity of glyceraldehyde 3-phosphate dehydrogenase
-
Bommareddy, R.R., Chen, Z., Rappert, S. &Zeng, A.P. A de novo NADPH generation pathway for improving lysine production of Corynebacterium glutamicum by rational design of the coenzyme specificity of glyceraldehyde 3-phosphate dehydrogenase. Metab. Eng. 25, 30-37 (2014).
-
(2014)
Metab. Eng.
, vol.25
, pp. 30-37
-
-
Bommareddy, R.R.1
Chen, Z.2
Rappert, S.3
Zeng, A.P.4
|