-
1
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
Bartel DP. MicroRNAs: target recognition and regulatory functions. Cell. 2009; 136:215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
2
-
-
23044437498
-
RNA meets chromatin
-
Bernstein E, Allis CD. RNA meets chromatin. Genes Dev. 2005; 19:1635-1655.
-
(2005)
Genes Dev
, vol.19
, pp. 1635-1655
-
-
Bernstein, E.1
Allis, C.D.2
-
3
-
-
79957907741
-
The melanoma-upregulated long noncoding RNA SPRY4-IT1 modulates apoptosis and invasion
-
Khaitan D, Dinger ME, Mazar J, Crawford J, Smith MA, Mattick JS, Perera RJ. The melanoma-upregulated long noncoding RNA SPRY4-IT1 modulates apoptosis and invasion. Cancer Res. 2011; 71:3852-3862.
-
(2011)
Cancer Res
, vol.71
, pp. 3852-3862
-
-
Khaitan, D.1
Dinger, M.E.2
Mazar, J.3
Crawford, J.4
Smith, M.A.5
Mattick, J.S.6
Perera, R.J.7
-
4
-
-
54049138948
-
Kcnq1ot1 antisense noncoding RNA mediates lineagespecific transcriptional silencing through chromatin-level regulation
-
Pandey RR, Mondal T, Mohammad F, Enroth S, Redrup L, Komorowski J, Nagano T, Mancini-Dinardo D, Kanduri C. Kcnq1ot1 antisense noncoding RNA mediates lineagespecific transcriptional silencing through chromatin-level regulation. Mol Cell. 2008; 32:232-246.
-
(2008)
Mol Cell
, vol.32
, pp. 232-246
-
-
Pandey, R.R.1
Mondal, T.2
Mohammad, F.3
Enroth, S.4
Redrup, L.5
Komorowski, J.6
Nagano, T.7
Mancini-Dinardo, D.8
Kanduri, C.9
-
5
-
-
33744912772
-
The c-Myc oncogene directly induces the H19 noncoding RNA by allele-specific binding to potentiate tumorigenesis
-
Barsyte-Lovejoy D, Lau SK, Boutros PC, Khosravi F, Jurisica I, Andrulis IL, Tsao MS, Penn LZ. The c-Myc oncogene directly induces the H19 noncoding RNA by allele-specific binding to potentiate tumorigenesis. Cancer Res. 2006; 66:5330-5337.
-
(2006)
Cancer Res
, vol.66
, pp. 5330-5337
-
-
Barsyte-Lovejoy, D.1
Lau, S.K.2
Boutros, P.C.3
Khosravi, F.4
Jurisica, I.5
Andrulis, I.L.6
Tsao, M.S.7
Penn, L.Z.8
-
6
-
-
34548304069
-
Activation of p53 by MEG3 non-coding RNA
-
Zhou Y, Zhong Y, Wang Y, Zhang X, Batista DL, Gejman R, Ansell PJ, Zhao J, Weng C, Klibanski A. Activation of p53 by MEG3 non-coding RNA. J Biol Chem. 2007; 282:24731-24742.
-
(2007)
J Biol Chem
, vol.282
, pp. 24731-24742
-
-
Zhou, Y.1
Zhong, Y.2
Wang, Y.3
Zhang, X.4
Batista, D.L.5
Gejman, R.6
Ansell, P.J.7
Zhao, J.8
Weng, C.9
Klibanski, A.10
-
7
-
-
84876125829
-
LncRNADisease: a database for long-noncoding RNA-associated diseases
-
Chen G, Wang Z, Wang D, Qiu C, Liu M, Chen X, Zhang Q, Yan G, Cui Q. LncRNADisease: a database for long-noncoding RNA-associated diseases. Nucleic Acids Res. 2013; 41:D983-986.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D983-D986
-
-
Chen, G.1
Wang, Z.2
Wang, D.3
Qiu, C.4
Liu, M.5
Chen, X.6
Zhang, Q.7
Yan, G.8
Cui, Q.9
-
8
-
-
84976883041
-
Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers
-
Ning S, Zhang J, Wang P, Zhi H, Wang J, Liu Y, Gao Y, Guo M, Yue M, Wang L, Li X. Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers. Nucleic Acids Res. 2016; 44:D980-985.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D980-D985
-
-
Ning, S.1
Zhang, J.2
Wang, P.3
Zhi, H.4
Wang, J.5
Liu, Y.6
Gao, Y.7
Guo, M.8
Yue, M.9
Wang, L.10
Li, X.11
-
9
-
-
84885644151
-
Novel human lncRNA-disease association inference based on lncRNA expression profiles
-
Chen X, Yan GY. Novel human lncRNA-disease association inference based on lncRNA expression profiles. Bioinformatics. 2013; 29:2617-2624.
-
(2013)
Bioinformatics
, vol.29
, pp. 2617-2624
-
-
Chen, X.1
Yan, G.Y.2
-
10
-
-
84894258048
-
A computational framework to infer human disease-associated long noncoding RNAs
-
Liu MX, Chen X, Chen G, Cui QH, Yan GY. A computational framework to infer human disease-associated long noncoding RNAs. PLoS One. 2014; 9:e84408.
-
(2014)
PLoS One
, vol.9
-
-
Liu, M.X.1
Chen, X.2
Chen, G.3
Cui, Q.H.4
Yan, G.Y.5
-
11
-
-
84900457632
-
A network based method for analysis of lncRNA-disease associations and prediction of lncRNAs implicated in diseases
-
Yang X, Gao L, Guo X, Shi X, Wu H, Song F, Wang B. A network based method for analysis of lncRNA-disease associations and prediction of lncRNAs implicated in diseases. PLoS One. 2014; 9:e87797.
-
(2014)
PLoS One
, vol.9
-
-
Yang, X.1
Gao, L.2
Guo, X.3
Shi, X.4
Wu, H.5
Song, F.6
Wang, B.7
-
12
-
-
84923347799
-
Prioritizing candidate disease-related long non-coding RNAs by walking on the heterogeneous lncRNA and disease network
-
Zhou M, Wang X, Li J, Hao D, Wang Z, Shi H, Han L, Zhou H, Sun J. Prioritizing candidate disease-related long non-coding RNAs by walking on the heterogeneous lncRNA and disease network. Mol Biosyst. 2015; 11:760-769.
-
(2015)
Mol Biosyst
, vol.11
, pp. 760-769
-
-
Zhou, M.1
Wang, X.2
Li, J.3
Hao, D.4
Wang, Z.5
Shi, H.6
Han, L.7
Zhou, H.8
Sun, J.9
-
13
-
-
84988349835
-
IRWRLDA: improved random walk with restart for lncRNA-disease association prediction
-
[Epub ahead of print]
-
Chen X, You ZH, Yan GY, Gong DW. IRWRLDA: improved random walk with restart for lncRNA-disease association prediction. Oncotarget. 2016. doi: 10.18632/oncotarget.11141. [Epub ahead of print].
-
(2016)
Oncotarget
-
-
Chen, X.1
You, Z.H.2
Yan, G.Y.3
Gong, D.W.4
-
14
-
-
84947272475
-
KATZLDA: KATZ measure for the lncRNAdisease association prediction
-
Chen X. KATZLDA: KATZ measure for the lncRNAdisease association prediction. Sci Rep. 2015; 5:16840.
-
(2015)
Sci Rep
, vol.5
, pp. 16840
-
-
Chen, X.1
-
15
-
-
84931281632
-
Constructing lncRNA functional similarity network based on lncRNAdisease associations and disease semantic similarity
-
Chen X, Yan CC, Luo C, Ji W, Zhang Y, Dai Q. Constructing lncRNA functional similarity network based on lncRNAdisease associations and disease semantic similarity. Sci Rep. 2015; 5:11338.
-
(2015)
Sci Rep
, vol.5
, pp. 11338
-
-
Chen, X.1
Yan, C.C.2
Luo, C.3
Ji, W.4
Zhang, Y.5
Dai, Q.6
-
16
-
-
84967109506
-
ILNCSIM: improved lncRNA functional similarity calculation model
-
Huang YA, Chen X, You ZH, Huang DS, Chan KC. ILNCSIM: improved lncRNA functional similarity calculation model. Oncotarget. 2016; 7:25902-25914. doi: 10.18632/oncotarget.8296.
-
(2016)
Oncotarget
, vol.7
, pp. 25902-25914
-
-
Huang, Y.A.1
Chen, X.2
You, Z.H.3
Huang, D.S.4
Chan, K.C.5
-
17
-
-
84979942197
-
FMLNCSIM: fuzzy measure-based lncRNA functional similarity calculation model
-
Chen X, Huang YA, Wang XS, You ZH, Chan KC. FMLNCSIM: fuzzy measure-based lncRNA functional similarity calculation model. Oncotarget. 2016; 7: 45948-45958. doi: 10.18632/oncotarget.10008.
-
(2016)
Oncotarget
, vol.7
, pp. 45948-45958
-
-
Chen, X.1
Huang, Y.A.2
Wang, X.S.3
You, Z.H.4
Chan, K.C.5
-
18
-
-
84989809071
-
Long non-coding RNAs and complex diseases: from experimental results to computational models
-
Chen X, Yan CC, Zhang X, You ZH. Long non-coding RNAs and complex diseases: from experimental results to computational models. Brief Bioinform. 2016.
-
(2016)
Brief Bioinform
-
-
Chen, X.1
Yan, C.C.2
Zhang, X.3
You, Z.H.4
-
19
-
-
77957850291
-
Emerging roles for natural microRNA sponges
-
Ebert MS, Sharp PA. Emerging roles for natural microRNA sponges. Curr Biol. 2010; 20:R858-861.
-
(2010)
Curr Biol
, vol.20
, pp. R858-R861
-
-
Ebert, M.S.1
Sharp, P.A.2
-
20
-
-
77951474125
-
Target mRNA abundance dilutes microRNA and siRNA activity
-
Arvey A, Larsson E, Sander C, Leslie CS, Marks DS. Target mRNA abundance dilutes microRNA and siRNA activity. Mol Syst Biol. 2010; 6:363.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 363
-
-
Arvey, A.1
Larsson, E.2
Sander, C.3
Leslie, C.S.4
Marks, D.S.5
-
21
-
-
34548230885
-
Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas
-
Calin GA, Liu CG, Ferracin M, Hyslop T, Spizzo R, Sevignani C, Fabbri M, Cimmino A, Lee EJ, Wojcik SE, Shimizu M, Tili E, Rossi S, et al. Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas. Cancer Cell. 2007; 12:215-229.
-
(2007)
Cancer Cell
, vol.12
, pp. 215-229
-
-
Calin, G.A.1
Liu, C.G.2
Ferracin, M.3
Hyslop, T.4
Spizzo, R.5
Sevignani, C.6
Fabbri, M.7
Cimmino, A.8
Lee, E.J.9
Wojcik, S.E.10
Shimizu, M.11
Tili, E.12
Rossi, S.13
-
22
-
-
79961170994
-
A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
-
Salmena L, Poliseno L, Tay Y, Kats L, Pandolfi PP. A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell. 2011; 146:353-358.
-
(2011)
Cell
, vol.146
, pp. 353-358
-
-
Salmena, L.1
Poliseno, L.2
Tay, Y.3
Kats, L.4
Pandolfi, P.P.5
-
23
-
-
84891818924
-
starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data
-
Li JH, Liu S, Zhou H, Qu LH, Yang JH. starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res. 2014; 42(Database issue):D92-97.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.DATABASE ISSUE
, pp. D92-D97
-
-
Li, J.H.1
Liu, S.2
Zhou, H.3
Qu, L.H.4
Yang, J.H.5
-
24
-
-
84903136092
-
lnCeDB: database of human long noncoding RNA acting as competing endogenous RNA
-
Das S, Ghosal S, Sen R, Chakrabarti J. lnCeDB: database of human long noncoding RNA acting as competing endogenous RNA. PLoS One. 2014; 9:e98965.
-
(2014)
PLoS One
, vol.9
-
-
Das, S.1
Ghosal, S.2
Sen, R.3
Chakrabarti, J.4
-
25
-
-
84930505376
-
Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer
-
Wang P, Ning S, Zhang Y, Li R, Ye J, Zhao Z, Zhi H, Wang T, Guo Z, Li X. Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer. Nucleic Acids Res. 2015; 43:3478-3489.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. 3478-3489
-
-
Wang, P.1
Ning, S.2
Zhang, Y.3
Li, R.4
Ye, J.5
Zhao, Z.6
Zhi, H.7
Wang, T.8
Guo, Z.9
Li, X.10
-
26
-
-
85010708860
-
Identification of prognostic biomarkers in glioblastoma using a long noncoding RNA-mediated, competitive endogenous RNA network
-
Cao Y, Wang P, Ning S, Xiao W, Xiao B, Li X. Identification of prognostic biomarkers in glioblastoma using a long noncoding RNA-mediated, competitive endogenous RNA network. Oncotarget. 2016; 7:41737-41747. doi: 10.18632/oncotarget.9569.
-
(2016)
Oncotarget
, vol.7
, pp. 41737-41747
-
-
Cao, Y.1
Wang, P.2
Ning, S.3
Xiao, W.4
Xiao, B.5
Li, X.6
-
27
-
-
84875417100
-
Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks
-
Guo X, Gao L, Liao Q, Xiao H, Ma X, Yang X, Luo H, Zhao G, Bu D, Jiao F, Shao Q, Chen R, Zhao Y. Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks. Nucleic Acids Res. 2013; 41:e35.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Guo, X.1
Gao, L.2
Liao, Q.3
Xiao, H.4
Ma, X.5
Yang, X.6
Luo, H.7
Zhao, G.8
Bu, D.9
Jiao, F.10
Shao, Q.11
Chen, R.12
Zhao, Y.13
-
28
-
-
84949197121
-
Comprehensive analysis of lncRNA-mRNA co-expression patterns identifies immune-associated lncRNA biomarkers in ovarian cancer malignant progression
-
Guo Q, Cheng Y, Liang T, He Y, Ren C, Sun L, Zhang G. Comprehensive analysis of lncRNA-mRNA co-expression patterns identifies immune-associated lncRNA biomarkers in ovarian cancer malignant progression. Sci Rep. 2015; 5:17683.
-
(2015)
Sci Rep
, vol.5
, pp. 17683
-
-
Guo, Q.1
Cheng, Y.2
Liang, T.3
He, Y.4
Ren, C.5
Sun, L.6
Zhang, G.7
-
29
-
-
84943192833
-
miRSponge: a manually curated database for experimentally supported miRNA sponges and ceRNAs
-
Wang P, Zhi H, Zhang Y, Liu Y, Zhang J, Gao Y, Guo M, Ning S, Li X. miRSponge: a manually curated database for experimentally supported miRNA sponges and ceRNAs. Database (Oxford). 2015; 2015.
-
(2015)
Database (Oxford).2015;
-
-
Wang, P.1
Zhi, H.2
Zhang, Y.3
Liu, Y.4
Zhang, J.5
Gao, Y.6
Guo, M.7
Ning, S.8
Li, X.9
-
30
-
-
84882643385
-
Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis
-
Liu K, Yan Z, Li Y, Sun Z. Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis. Bioinformatics. 2013; 29:2221-2222.
-
(2013)
Bioinformatics
, vol.29
, pp. 2221-2222
-
-
Liu, K.1
Yan, Z.2
Li, Y.3
Sun, Z.4
-
31
-
-
68249087607
-
Semantic similarity in biomedical ontologies
-
Pesquita C, Faria D, Falcao AO, Lord P, Couto FM. Semantic similarity in biomedical ontologies. PLoS Comput Biol. 2009; 5:e1000443.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Pesquita, C.1
Faria, D.2
Falcao, A.O.3
Lord, P.4
Couto, F.M.5
-
32
-
-
84961990961
-
Construction and analysis of cardiac hypertrophy-associated lncRNA-mRNA network based on competitive endogenous RNA reveal functional lncRNAs in cardiac hypertrophy
-
Song C, Zhang J, Liu Y, Pan H, Qi HP, Cao YG, Zhao JM, Li S, Guo J, Sun HL, Li CQ. Construction and analysis of cardiac hypertrophy-associated lncRNA-mRNA network based on competitive endogenous RNA reveal functional lncRNAs in cardiac hypertrophy. Oncotarget. 2016; 7:10827-10840. doi: 10.18632/oncotarget.7312.
-
(2016)
Oncotarget
, vol.7
, pp. 10827-10840
-
-
Song, C.1
Zhang, J.2
Liu, Y.3
Pan, H.4
Qi, H.P.5
Cao, Y.G.6
Zhao, J.M.7
Li, S.8
Guo, J.9
Sun, H.L.10
Li, C.Q.11
-
33
-
-
33646568805
-
Gene prioritization through genomic data fusion
-
Aerts S, Lambrechts D, Maity S, Van Loo P, Coessens B, De Smet F, Tranchevent LC, De Moor B, Marynen P, Hassan B, Carmeliet P, Moreau Y. Gene prioritization through genomic data fusion. Nat Biotechnol. 2006; 24:537-544.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 537-544
-
-
Aerts, S.1
Lambrechts, D.2
Maity, S.3
Van Loo, P.4
Coessens, B.5
De Smet, F.6
Tranchevent, L.C.7
De Moor, B.8
Marynen, P.9
Hassan, B.10
Carmeliet, P.11
Moreau, Y.12
-
34
-
-
84887041034
-
eXtasy: variant prioritization by genomic data fusion
-
Sifrim A, Popovic D, Tranchevent LC, Ardeshirdavani A, Sakai R, Konings P, Vermeesch JR, Aerts J, De Moor B, Moreau Y. eXtasy: variant prioritization by genomic data fusion. Nat Methods. 2013; 10:1083-1084.
-
(2013)
Nat Methods
, vol.10
, pp. 1083-1084
-
-
Sifrim, A.1
Popovic, D.2
Tranchevent, L.C.3
Ardeshirdavani, A.4
Sakai, R.5
Konings, P.6
Vermeesch, J.R.7
Aerts, J.8
De Moor, B.9
Moreau, Y.10
-
35
-
-
84872242932
-
mirTarPri: improved prioritization of microRNA targets through incorporation of functional genomics data
-
Wang P, Ning S, Wang Q, Li R, Ye J, Zhao Z, Li Y, Huang T, Li X. mirTarPri: improved prioritization of microRNA targets through incorporation of functional genomics data. PLoS One. 2013; 8:e53685.
-
(2013)
PLoS One
, vol.8
-
-
Wang, P.1
Ning, S.2
Wang, Q.3
Li, R.4
Ye, J.5
Zhao, Z.6
Li, Y.7
Huang, T.8
Li, X.9
-
36
-
-
84979879873
-
Construction of a lncRNAmediated feed-forward loop network reveals global topological features and prognostic motifs in human cancers
-
Ning S, Gao Y, Wang P, Li X, Zhi H, Zhang Y, Liu Y, Zhang J, Guo M, Han D, Li X. Construction of a lncRNAmediated feed-forward loop network reveals global topological features and prognostic motifs in human cancers. Oncotarget. 2016; 7:45937-45947. doi: 10.18632/oncotarget.10004.
-
(2016)
Oncotarget
, vol.7
, pp. 45937-45947
-
-
Ning, S.1
Gao, Y.2
Wang, P.3
Li, X.4
Zhi, H.5
Zhang, Y.6
Liu, Y.7
Zhang, J.8
Guo, M.9
Han, D.10
Li, X.11
-
37
-
-
84967109506
-
ILNCSIM: improved lncRNA functional similarity calculation model
-
Huang YA, Chen X, You ZH, Huang DS, Chan KC. ILNCSIM: improved lncRNA functional similarity calculation model. Oncotarget. 2016; 7:25902-14. doi: 10.18632/oncotarget.8296.
-
(2016)
Oncotarget
, vol.7
, pp. 25902-25914
-
-
Huang, Y.A.1
Chen, X.2
You, Z.H.3
Huang, D.S.4
Chan, K.C.5
-
38
-
-
84928014306
-
Heterogeneous network model to infer human disease-long intergenic noncoding RNA associations
-
Ganegoda GU, Li M, Wang W, Feng Q. Heterogeneous network model to infer human disease-long intergenic noncoding RNA associations. IEEE Trans Nanobioscience. 2015; 14:175-183.
-
(2015)
IEEE Trans Nanobioscience
, vol.14
, pp. 175-183
-
-
Ganegoda, G.U.1
Li, M.2
Wang, W.3
Feng, Q.4
-
39
-
-
84939498768
-
Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA
-
Chen X. Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA. Sci Rep. 2015; 5:13186.
-
(2015)
Sci Rep
, vol.5
, pp. 13186
-
-
Chen, X.1
-
40
-
-
77953888015
-
Prioritization of disease microRNAs through a human phenome-microRNAome network
-
Jiang Q, Hao Y, Wang G, Juan L, Zhang T, Teng M, Liu Y, Wang Y. Prioritization of disease microRNAs through a human phenome-microRNAome network. BMC Syst Biol. 2010; 4 Suppl 1:S2.
-
(2010)
BMC Syst Biol
, vol.4
, pp. S2
-
-
Jiang, Q.1
Hao, Y.2
Wang, G.3
Juan, L.4
Zhang, T.5
Teng, M.6
Liu, Y.7
Wang, Y.8
-
41
-
-
85028283290
-
Alzheimer's disease
-
Scheltens P, Blennow K, Breteler MM, de Strooper B, Frisoni GB, Salloway S, Van der Flier WM. Alzheimer's disease. Lancet. 2016.
-
(2016)
Lancet
-
-
Scheltens, P.1
Blennow, K.2
Breteler, M.M.3
de Strooper, B.4
Frisoni, G.B.5
Salloway, S.6
Van der Flier, W.M.7
-
42
-
-
79956010263
-
Largescale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network
-
Liao Q, Liu C, Yuan X, Kang S, Miao R, Xiao H, Zhao G, Luo H, Bu D, Zhao H, Skogerbo G, Wu Z, Zhao Y. Largescale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network. Nucleic Acids Res. 2011; 39:3864-3878.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3864-3878
-
-
Liao, Q.1
Liu, C.2
Yuan, X.3
Kang, S.4
Miao, R.5
Xiao, H.6
Zhao, G.7
Luo, H.8
Bu, D.9
Zhao, H.10
Skogerbo, G.11
Wu, Z.12
Zhao, Y.13
-
43
-
-
84860494301
-
Combination of p53(ser15) and p21/p21(thr145) in peripheral blood lymphocytes as potential Alzheimer's disease biomarkers
-
Tan M, Wang S, Song J, Jia J. Combination of p53(ser15) and p21/p21(thr145) in peripheral blood lymphocytes as potential Alzheimer's disease biomarkers. Neurosci Lett. 2012; 516:226-231.
-
(2012)
Neurosci Lett
, vol.516
, pp. 226-231
-
-
Tan, M.1
Wang, S.2
Song, J.3
Jia, J.4
-
44
-
-
34848912255
-
The PVT-1 oncogene is a Myc protein target that is overexpressed in transformed cells
-
Carramusa L, Contino F, Ferro A, Minafra L, Perconti G, Giallongo A, Feo S. The PVT-1 oncogene is a Myc protein target that is overexpressed in transformed cells. J Cell Physiol. 2007; 213:511-518.
-
(2007)
J Cell Physiol
, vol.213
, pp. 511-518
-
-
Carramusa, L.1
Contino, F.2
Ferro, A.3
Minafra, L.4
Perconti, G.5
Giallongo, A.6
Feo, S.7
-
45
-
-
84885666488
-
Identification of active transcription factor and miRNA regulatory pathways in Alzheimer's disease
-
Jiang W, Zhang Y, Meng F, Lian B, Chen X, Yu X, Dai E, Wang S, Liu X, Li X, Wang L, Li X. Identification of active transcription factor and miRNA regulatory pathways in Alzheimer's disease. Bioinformatics. 2013; 29:2596-2602.
-
(2013)
Bioinformatics
, vol.29
, pp. 2596-2602
-
-
Jiang, W.1
Zhang, Y.2
Meng, F.3
Lian, B.4
Chen, X.5
Yu, X.6
Dai, E.7
Wang, S.8
Liu, X.9
Li, X.10
Wang, L.11
Li, X.12
-
46
-
-
84947026825
-
Identification of Alzheimer's diseaseassociated long noncoding RNAs
-
Zhou X, Xu J. Identification of Alzheimer's diseaseassociated long noncoding RNAs. neurobiolaging. 2015; 36:2925-2931.
-
(2015)
neurobiolaging
, vol.36
, pp. 2925-2931
-
-
Zhou, X.1
Xu, J.2
-
47
-
-
79953208314
-
The role of the ubiquitin proteasome system in Alzheimer's disease
-
Riederer BM, Leuba G, Vernay A, Riederer IM. The role of the ubiquitin proteasome system in Alzheimer's disease. Exp Biol Med. 2011; 236:268-276.
-
(2011)
Exp Biol Med
, vol.236
, pp. 268-276
-
-
Riederer, B.M.1
Leuba, G.2
Vernay, A.3
Riederer, I.M.4
-
48
-
-
67649440886
-
The biology of ovarian cancer: new opportunities for translation
-
Bast RC, Jr., Hennessy B, Mills GB. The biology of ovarian cancer: new opportunities for translation. Nat Rev Cancer. 2009; 9:415-428.
-
(2009)
Nat Rev Cancer
, vol.9
, pp. 415-428
-
-
Bast, R.C.1
Hennessy, B.2
Mills, G.B.3
-
49
-
-
84943811178
-
Long non-coding RNA growth arrest-specific transcript 5 is involved in ovarian cancer cell apoptosis through the mitochondria-mediated apoptosis pathway
-
Gao J, Liu M, Zou Y, Mao M, Shen T, Zhang C, Song S, Sun M, Zhang S, Wang B, Zhu D, Li P. Long non-coding RNA growth arrest-specific transcript 5 is involved in ovarian cancer cell apoptosis through the mitochondria-mediated apoptosis pathway. Oncol Rep. 2015; 34:3212-3221.
-
(2015)
Oncol Rep
, vol.34
, pp. 3212-3221
-
-
Gao, J.1
Liu, M.2
Zou, Y.3
Mao, M.4
Shen, T.5
Zhang, C.6
Song, S.7
Sun, M.8
Zhang, S.9
Wang, B.10
Zhu, D.11
Li, P.12
-
50
-
-
84891332774
-
Identification of differentially expressed long non-coding RNAs in human ovarian cancer cells with different metastatic potentials
-
Liu SP, Yang JX, Cao DY, Shen K. Identification of differentially expressed long non-coding RNAs in human ovarian cancer cells with different metastatic potentials. Cancer Biol Med. 2013; 10:138-141.
-
(2013)
Cancer Biol Med
, vol.10
, pp. 138-141
-
-
Liu, S.P.1
Yang, J.X.2
Cao, D.Y.3
Shen, K.4
-
51
-
-
84903174044
-
Promoter hypermethylation influences the suppressive role of maternally expressed 3, a long non-coding RNA, in the development of epithelial ovarian cancer
-
Sheng X, Li J, Yang L, Chen Z, Zhao Q, Tan L, Zhou Y, Li J. Promoter hypermethylation influences the suppressive role of maternally expressed 3, a long non-coding RNA, in the development of epithelial ovarian cancer. Oncol Rep. 2014; 32:277-285.
-
(2014)
Oncol Rep
, vol.32
, pp. 277-285
-
-
Sheng, X.1
Li, J.2
Yang, L.3
Chen, Z.4
Zhao, Q.5
Tan, L.6
Zhou, Y.7
Li, J.8
-
52
-
-
84903124951
-
Overexpression of long non coding RNA HOTAIR predicts poor patient prognosis and promotes tumor metastasis in epithelial ovarian cancer
-
Qiu JJ, Lin YY, Ye LC, Ding JX, Feng WW, Jin HY, Zhang Y, Li Q, Hua KQ. Overexpression of long non coding RNA HOTAIR predicts poor patient prognosis and promotes tumor metastasis in epithelial ovarian cancer. Gynecol Oncol. 2014; 134:121-128.
-
(2014)
Gynecol Oncol
, vol.134
, pp. 121-128
-
-
Qiu, J.J.1
Lin, Y.Y.2
Ye, L.C.3
Ding, J.X.4
Feng, W.W.5
Jin, H.Y.6
Zhang, Y.7
Li, Q.8
Hua, K.Q.9
-
53
-
-
69349097813
-
Genome-wide association study identifies variants in the ABO locus associated with susceptibility to pancreatic cancer
-
Amundadottir L, Kraft P, Stolzenberg-Solomon RZ, Fuchs CS, Petersen GM, Arslan AA, Bueno-de-Mesquita HB, Gross M, Helzlsouer K, Jacobs EJ, LaCroix A, Zheng W, Albanes D, et al. Genome-wide association study identifies variants in the ABO locus associated with susceptibility to pancreatic cancer. Nat Genet. 2009; 41:986-990.
-
(2009)
Nat Genet
, vol.41
, pp. 986-990
-
-
Amundadottir, L.1
Kraft, P.2
Stolzenberg-Solomon, R.Z.3
Fuchs, C.S.4
Petersen, G.M.5
Arslan, A.A.6
Bueno-de-Mesquita, H.B.7
Gross, M.8
Helzlsouer, K.9
Jacobs, E.J.10
LaCroix, A.11
Zheng, W.12
Albanes, D.13
-
54
-
-
84890569859
-
Downregulation of gas5 increases pancreatic cancer cell proliferation by regulating CDK6
-
Lu X, Fang Y, Wang Z, Xie J, Zhan Q, Deng X, Chen H, Jin J, Peng C, Li H, Shen B. Downregulation of gas5 increases pancreatic cancer cell proliferation by regulating CDK6. Cell Tissue Res. 2013; 354:891-896.
-
(2013)
Cell Tissue Res
, vol.354
, pp. 891-896
-
-
Lu, X.1
Fang, Y.2
Wang, Z.3
Xie, J.4
Zhan, Q.5
Deng, X.6
Chen, H.7
Jin, J.8
Peng, C.9
Li, H.10
Shen, B.11
-
55
-
-
84922983119
-
Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling
-
Zhou M, Ye Z, Gu Y, Tian B, Wu B, Li J. Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling. Int J Clin Exp Pathol. 2015; 8:38-52.
-
(2015)
Int J Clin Exp Pathol
, vol.8
, pp. 38-52
-
-
Zhou, M.1
Ye, Z.2
Gu, Y.3
Tian, B.4
Wu, B.5
Li, J.6
-
56
-
-
84894281222
-
Treatment of gastric cancer
-
Orditura M, Galizia G, Sforza V, Gambardella V, Fabozzi A, Laterza MM, Andreozzi F, Ventriglia J, Savastano B, Mabilia A, Lieto E, Ciardiello F, De Vita F. Treatment of gastric cancer. World J Gastroenterol. 2014; 20:1635-1649.
-
(2014)
World J Gastroenterol
, vol.20
, pp. 1635-1649
-
-
Orditura, M.1
Galizia, G.2
Sforza, V.3
Gambardella, V.4
Fabozzi, A.5
Laterza, M.M.6
Andreozzi, F.7
Ventriglia, J.8
Savastano, B.9
Mabilia, A.10
Lieto, E.11
Ciardiello, F.12
De Vita, F.13
-
57
-
-
84938633468
-
LncRNAAP001631.9 promotes cell migration in gastric cancer
-
Cai H, Ye X, He B, Li Q, Li Y, Gao Y. LncRNAAP001631.9 promotes cell migration in gastric cancer. Int J Clin Exp Pathol. 2015; 8:6235-6244.
-
(2015)
Int J Clin Exp Pathol
, vol.8
, pp. 6235-6244
-
-
Cai, H.1
Ye, X.2
He, B.3
Li, Q.4
Li, Y.5
Gao, Y.6
-
58
-
-
84905118394
-
MALAT1 promotes cell proliferation in gastric cancer by recruiting SF2/ASF
-
Wang J, Su L, Chen X, Li P, Cai Q, Yu B, Liu B, Wu W, Zhu Z. MALAT1 promotes cell proliferation in gastric cancer by recruiting SF2/ASF. Biomed Pharmacother. 2014; 68:557-564.
-
(2014)
Biomed Pharmacother
, vol.68
, pp. 557-564
-
-
Wang, J.1
Su, L.2
Chen, X.3
Li, P.4
Cai, Q.5
Yu, B.6
Liu, B.7
Wu, W.8
Zhu, Z.9
-
59
-
-
84938681729
-
Long non-coding RNA MEG3 functions as a competing endogenous RNA to regulate gastric cancer progression
-
Peng W, Si S, Zhang Q, Li C, Zhao F, Wang F, Yu J, Ma R. Long non-coding RNA MEG3 functions as a competing endogenous RNA to regulate gastric cancer progression. J Exp Clin Cancer Res. 2015; 34:79.
-
(2015)
J Exp Clin Cancer Res
, vol.34
, pp. 79
-
-
Peng, W.1
Si, S.2
Zhang, Q.3
Li, C.4
Zhao, F.5
Wang, F.6
Yu, J.7
Ma, R.8
-
60
-
-
84907973989
-
RNA sequencing: current and prospective uses in metabolic research
-
Vikman P, Fadista J, Oskolkov N. RNA sequencing: current and prospective uses in metabolic research. J Mol Endocrinol. 2014; 53:R93-101.
-
(2014)
J Mol Endocrinol
, vol.53
, pp. R93-R101
-
-
Vikman, P.1
Fadista, J.2
Oskolkov, N.3
-
61
-
-
12844277985
-
Estimates of cancer incidence in China for 2000 and projections for 2005
-
Yang L, Parkin DM, Ferlay J, Li L, Chen Y. Estimates of cancer incidence in China for 2000 and projections for 2005. Cancer Epidemiol Biomarkers Prev. 2005; 14:243-250.
-
(2005)
Cancer Epidemiol Biomarkers Prev
, vol.14
, pp. 243-250
-
-
Yang, L.1
Parkin, D.M.2
Ferlay, J.3
Li, L.4
Chen, Y.5
-
62
-
-
84971574759
-
miR-675-5p enhances tumorigenesis and metastasis of esophageal squamous cell carcinoma by targeting REPS2
-
Zhou YW, Zhang H, Duan CJ, Gao Y, Cheng YD, He D, Li R, Zhang CF. miR-675-5p enhances tumorigenesis and metastasis of esophageal squamous cell carcinoma by targeting REPS2. Oncotarget. 2016; 7:30730-47. doi: 10.18632/oncotarget.8950.
-
(2016)
Oncotarget
, vol.7
, pp. 30730-30747
-
-
Zhou, Y.W.1
Zhang, H.2
Duan, C.J.3
Gao, Y.4
Cheng, Y.D.5
He, D.6
Li, R.7
Zhang, C.F.8
-
63
-
-
84991355174
-
HOTAIR overexpression correlated with worse survival in patients with solid tumors
-
Miao Z, Ding J, Chen B, Yang Y, Chen Y. HOTAIR overexpression correlated with worse survival in patients with solid tumors. Minerva Med. 2016.
-
(2016)
Minerva Med
-
-
Miao, Z.1
Ding, J.2
Chen, B.3
Yang, Y.4
Chen, Y.5
-
64
-
-
84954114277
-
ANRIL: a pivotal tumor suppressor long non-coding RNA in human cancers
-
Li Z, Yu X, Shen J. ANRIL: a pivotal tumor suppressor long non-coding RNA in human cancers. Tumour Biol. 2016; 37:5657-5661.
-
(2016)
Tumour Biol
, vol.37
, pp. 5657-5661
-
-
Li, Z.1
Yu, X.2
Shen, J.3
-
65
-
-
83755205389
-
Prioritizing human cancer microRNAs based on genes' functional consistency between microRNA and cancer
-
Li X, Wang Q, Zheng Y, Lv S, Ning S, Sun J, Huang T, Zheng Q, Ren H, Xu J, Wang X, Li Y. Prioritizing human cancer microRNAs based on genes' functional consistency between microRNA and cancer. Nucleic Acids Res. 2011; 39:e153.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Li, X.1
Wang, Q.2
Zheng, Y.3
Lv, S.4
Ning, S.5
Sun, J.6
Huang, T.7
Zheng, Q.8
Ren, H.9
Xu, J.10
Wang, X.11
Li, Y.12
-
66
-
-
78651293534
-
miRBase: integrating microRNA annotation and deep-sequencing data
-
Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 2011; 39:D152-157.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D152-D157
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
67
-
-
75549090948
-
Ensembl Genomes: extending Ensembl across the taxonomic space
-
Kersey PJ, Lawson D, Birney E, Derwent PS, Haimel M, Herrero J, Keenan S, Kerhornou A, Koscielny G, Kahari A, Kinsella RJ, Kulesha E, Maheswari U, et al. Ensembl Genomes: extending Ensembl across the taxonomic space. Nucleic Acids Res. 2010; 38:D563-569.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D563-D569
-
-
Kersey, P.J.1
Lawson, D.2
Birney, E.3
Derwent, P.S.4
Haimel, M.5
Herrero, J.6
Keenan, S.7
Kerhornou, A.8
Koscielny, G.9
Kahari, A.10
Kinsella, R.J.11
Kulesha, E.12
Maheswari, U.13
-
68
-
-
58149203235
-
The database of experimentally supported targets: a functional update of TarBase
-
Papadopoulos GL, Reczko M, Simossis VA, Sethupathy P, Hatzigeorgiou AG. The database of experimentally supported targets: a functional update of TarBase. Nucleic Acids Res. 2009; 37:D155-158.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D155-D158
-
-
Papadopoulos, G.L.1
Reczko, M.2
Simossis, V.A.3
Sethupathy, P.4
Hatzigeorgiou, A.G.5
-
69
-
-
78651266827
-
miRTarBase: a database curates experimentally validated microRNA-target interactions
-
Hsu SD, Lin FM, Wu WY, Liang C, Huang WC, Chan WL, Tsai WT, Chen GZ, Lee CJ, Chiu CM, Chien CH, Wu MC, Huang CY, et al. miRTarBase: a database curates experimentally validated microRNA-target interactions. Nucleic Acids Res. 2011; 39:D163-169.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D163-D169
-
-
Hsu, S.D.1
Lin, F.M.2
Wu, W.Y.3
Liang, C.4
Huang, W.C.5
Chan, W.L.6
Tsai, W.T.7
Chen, G.Z.8
Lee, C.J.9
Chiu, C.M.10
Chien, C.H.11
Wu, M.C.12
Huang, C.Y.13
-
70
-
-
0003033112
-
Using Information Content to Evaluate Semantic Similarity in a Taxonomy
-
Resnik P. Using Information Content to Evaluate Semantic Similarity in a Taxonomy. In Proceedings of IJCAI-95. 1995:448-453.
-
(1995)
Proceedings of IJCAI-95
, pp. 448-453
-
-
Resnik, P.1
-
71
-
-
58149193222
-
Human Protein Reference Database-2009 update
-
Keshava Prasad TS, Goel R, Kandasamy K, Keerthikumar S, Kumar S, Mathivanan S, Telikicherla D, Raju R, Shafreen B, Venugopal A, Balakrishnan L, Marimuthu A, Banerjee S, et al. Human Protein Reference Database-2009 update. Nucleic Acids Res. 2009; 37:D767-772.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D767-D772
-
-
Keshava Prasad, T.S.1
Goel, R.2
Kandasamy, K.3
Keerthikumar, S.4
Kumar, S.5
Mathivanan, S.6
Telikicherla, D.7
Raju, R.8
Shafreen, B.9
Venugopal, A.10
Balakrishnan, L.11
Marimuthu, A.12
Banerjee, S.13
-
72
-
-
0033930882
-
BIND a data specification for storing and describing biomolecular interactions, molecular complexes and pathways
-
Bader GD, Hogue CW. BIND-a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bioinformatics. 2000; 16:465-477.
-
(2000)
Bioinformatics
, vol.16
, pp. 465-477
-
-
Bader, G.D.1
Hogue, C.W.2
-
73
-
-
33846073818
-
MINT: the Molecular INTeraction database
-
Chatr-Aryamontri A, Ceol A, Palazzi LM, Nardelli G, Schneider MV, Castagnoli L, Cesareni G. MINT: the Molecular INTeraction database. Nucleic Acids Res. 2007; 35:D572-574.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. D572-D574
-
-
Chatr-Aryamontri, A.1
Ceol, A.2
Palazzi, L.M.3
Nardelli, G.4
Schneider, M.V.5
Castagnoli, L.6
Cesareni, G.7
-
74
-
-
33644873184
-
BioGRID: a general repository for interaction datasets
-
Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, Tyers M. BioGRID: a general repository for interaction datasets. Nucleic Acids Res. 2006; 34:D535-539.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D535-D539
-
-
Stark, C.1
Breitkreutz, B.J.2
Reguly, T.3
Boucher, L.4
Breitkreutz, A.5
Tyers, M.6
-
75
-
-
75549087047
-
The IntAct molecular interaction database in 2010
-
Aranda B, Achuthan P, Alam-Faruque Y, Armean I, Bridge A, Derow C, Feuermann M, Ghanbarian AT, Kerrien S, Khadake J, Kerssemakers J, Leroy C, Menden M, et al. The IntAct molecular interaction database in 2010. Nucleic Acids Res. 2010; 38:D525-531.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D525-D531
-
-
Aranda, B.1
Achuthan, P.2
Alam-Faruque, Y.3
Armean, I.4
Bridge, A.5
Derow, C.6
Feuermann, M.7
Ghanbarian, A.T.8
Kerrien, S.9
Khadake, J.10
Kerssemakers, J.11
Leroy, C.12
Menden, M.13
-
76
-
-
18744376914
-
Online predicted human interaction database
-
Brown KR, Jurisica I. Online predicted human interaction database. Bioinformatics. 2005; 21:2076-2082.
-
(2005)
Bioinformatics
, vol.21
, pp. 2076-2082
-
-
Brown, K.R.1
Jurisica, I.2
-
77
-
-
84976892806
-
NONCODE 2016: an informative and valuable data source of long non-coding RNAs
-
Zhao Y, Li H, Fang S, Kang Y, Wu W, Hao Y, Li Z, Bu D, Sun N, Zhang MQ, Chen R. NONCODE 2016: an informative and valuable data source of long non-coding RNAs. Nucleic Acids Res. 2016; 44:D203-208.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D203-D208
-
-
Zhao, Y.1
Li, H.2
Fang, S.3
Kang, Y.4
Wu, W.5
Hao, Y.6
Li, Z.7
Bu, D.8
Sun, N.9
Zhang, M.Q.10
Chen, R.11
|