-
1
-
-
84931571832
-
Functions of the 5' and 3' ends of calicivirus genomes
-
Alhatlani, B., Vashist, S., and Goodfellow, I. (2015). Functions of the 5' and 3' ends of calicivirus genomes. Virus Res. 206, 134-143. doi: 10.1016/j.virusres.2015.02.002
-
(2015)
Virus Res
, vol.206
, pp. 134-143
-
-
Alhatlani, B.1
Vashist, S.2
Goodfellow, I.3
-
2
-
-
77951297972
-
Duration of norovirus excretion and the longitudinal course of viral load in norovirus-infected elderly patients
-
Aoki, Y., Suto, A., Mizuta, K., Ahiko, T., Osaka, K., and Matsuzaki, Y. (2010). Duration of norovirus excretion and the longitudinal course of viral load in norovirus-infected elderly patients. J. Hosp. Infect. 75, 42-46. doi: 10.1016/j.jhin.2009.12.016
-
(2010)
J. Hosp. Infect
, vol.75
, pp. 42-46
-
-
Aoki, Y.1
Suto, A.2
Mizuta, K.3
Ahiko, T.4
Osaka, K.5
Matsuzaki, Y.6
-
3
-
-
84860771820
-
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
-
Bankevich, A., Nurk, S., Antipov, D., Gurevich, A. A., Dvorkin, M., Kulikov, A. S., et al. (2012). SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477. doi: 10.1089/cmb.2012.0021
-
(2012)
J. Comput. Biol
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
-
4
-
-
84906790771
-
Infection control for norovirus
-
Barclay, L., Park, G. W., Vega, E., Hall, A., Parashar, U., Vinje, J., et al. (2014). Infection control for norovirus. Clin. Microbiol. Infect. 20, 731-740. doi: 10.1111/1469-0691.12674
-
(2014)
Clin. Microbiol. Infect
, vol.20
, pp. 731-740
-
-
Barclay, L.1
Park, G.W.2
Vega, E.3
Hall, A.4
Parashar, U.5
Vinje, J.6
-
5
-
-
84878837128
-
A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples
-
Batty, E. M., Wong, T. H., Trebes, A., Argoud, K., Attar, M., Buck, D., et al. (2013). A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples. PLoS ONE 8:e66129. doi: 10.1371/journal.pone.0066129
-
(2013)
PLoS ONE
, vol.8
-
-
Batty, E.M.1
Wong, T.H.2
Trebes, A.3
Argoud, K.4
Attar, M.5
Buck, D.6
-
6
-
-
84874964797
-
Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data
-
Beerenwinkel, N., Gunthard, H. F., Roth, V., and Metzner, K. J. (2012). Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data. Front. Microbiol. 3:329. doi: 10.3389/fmicb.2012.00329
-
(2012)
Front. Microbiol
, vol.3
, pp. 329
-
-
Beerenwinkel, N.1
Gunthard, H.F.2
Roth, V.3
Metzner, K.J.4
-
7
-
-
84906505740
-
The burden of norovirus gastroenteritis: an important foodborne and healthcare-related infection
-
Belliot, G., Lopman, B. A., Ambert-Balay, K., and Pothier, P. (2014). The burden of norovirus gastroenteritis: an important foodborne and healthcare-related infection. Clin. Microbiol. Infect. 20, 724-730. doi: 10.1111/1469-0691.12722
-
(2014)
Clin. Microbiol. Infect
, vol.20
, pp. 724-730
-
-
Belliot, G.1
Lopman, B.A.2
Ambert-Balay, K.3
Pothier, P.4
-
8
-
-
84979713814
-
PR2S2Clust: patched RNA-seq read segments' structure-oriented clustering
-
Biswas, A. K., and Gao, J. X. (2016). PR2S2Clust: patched RNA-seq read segments' structure-oriented clustering. J. Bioinform. Comput. Biol. 14:1650027. doi: 10.1142/S021972001650027X
-
(2016)
J. Bioinform. Comput. Biol
, vol.14
-
-
Biswas, A.K.1
Gao, J.X.2
-
9
-
-
80052294511
-
Comparative evolution of GII.3 and GII.4 norovirus over a 31-year period
-
Boon, D., Mahar, J. E., Abente, E. J., Kirkwood, C. D., Purcell, R. H., Kapikian, A. Z., et al. (2011). Comparative evolution of GII.3 and GII.4 norovirus over a 31-year period. J. Virol. 85, 8656-8666. doi: 10.1128/JVI.00472-11
-
(2011)
J. Virol
, vol.85
, pp. 8656-8666
-
-
Boon, D.1
Mahar, J.E.2
Abente, E.J.3
Kirkwood, C.D.4
Purcell, R.H.5
Kapikian, A.Z.6
-
10
-
-
77956837921
-
Model-based quality assessment and base-calling for second-generation sequencing data
-
Bravo, H. C., and Irizarry, R. A. (2010). Model-based quality assessment and base-calling for second-generation sequencing data. Biometrics 66, 665-674. doi: 10.1111/j.1541-0420.2009.01353.x
-
(2010)
Biometrics
, vol.66
, pp. 665-674
-
-
Bravo, H.C.1
Irizarry, R.A.2
-
11
-
-
84991219412
-
Norovirus whole-genome sequencing by sureselect target enrichment: a robust and sensitive method
-
Brown, J. R., Roy, S., Ruis, C., Yara Romero, E., Shah, D., Williams, R., et al. (2016). Norovirus whole-genome sequencing by sureselect target enrichment: a robust and sensitive method. J. Clin. Microbiol. 54, 2530-2537. doi: 10.1128/JCM.01052-16
-
(2016)
J. Clin. Microbiol
, vol.54
, pp. 2530-2537
-
-
Brown, J.R.1
Roy, S.2
Ruis, C.3
Yara Romero, E.4
Shah, D.5
Williams, R.6
-
12
-
-
84857961991
-
Contribution of intra-and interhost dynamics to norovirus evolution
-
Bull, R. A., Eden, J. S., Luciani, F., McElroy, K., Rawlinson, W. D., and White, P. A. (2012). Contribution of intra-and interhost dynamics to norovirus evolution. J. Virol. 86, 3219-3229. doi: 10.1128/JVI.06712-11
-
(2012)
J. Virol
, vol.86
, pp. 3219-3229
-
-
Bull, R.A.1
Eden, J.S.2
Luciani, F.3
McElroy, K.4
Rawlinson, W.D.5
White, P.A.6
-
13
-
-
77950397317
-
Rapid evolution of pandemic noroviruses of the GII.4 lineage
-
Bull, R. A., Eden, J. S., Rawlinson, W. D., and White, P. A. (2010). Rapid evolution of pandemic noroviruses of the GII.4 lineage. PLoS Pathog. 6:e1000831. doi: 10.1371/journal.ppat.1000831
-
(2010)
PLoS Pathog
, vol.6
-
-
Bull, R.A.1
Eden, J.S.2
Rawlinson, W.D.3
White, P.A.4
-
14
-
-
79955476677
-
Mechanisms of GII.4 norovirus evolution
-
Bull, R. A., and White, P. A. (2011). Mechanisms of GII.4 norovirus evolution. Trends Microbiol. 19, 233-240. doi: 10.1016/j.tim.2011.01.002
-
(2011)
Trends Microbiol
, vol.19
, pp. 233-240
-
-
Bull, R.A.1
White, P.A.2
-
15
-
-
84949034565
-
Rapid emergence and predominance of a broadly recognizing and fast-evolving norovirus GII.17 variant in late 2014
-
Chan, M. C., Lee, N., Hung, T. N., Kwok, K., Cheung, K., Tin, E. K., et al. (2015). Rapid emergence and predominance of a broadly recognizing and fast-evolving norovirus GII.17 variant in late 2014. Nat. Commun. 6:10061. doi: 10.1038/ncomms10061
-
(2015)
Nat. Commun
, vol.6
, pp. 10061
-
-
Chan, M.C.1
Lee, N.2
Hung, T.N.3
Kwok, K.4
Cheung, K.5
Tin, E.K.6
-
16
-
-
84861004174
-
Emergence of a new norovirus GII.6 variant in Japan, 2008-2009
-
Chan-It, W., Thongprachum, A., Khamrin, P., Kobayashi, M., Okitsu, S., Mizuguchi, M., et al. (2012). Emergence of a new norovirus GII.6 variant in Japan, 2008-2009. J. Med. Virol. 84, 1089-1096. doi: 10.1002/jmv.23309
-
(2012)
J. Med. Virol
, vol.84
, pp. 1089-1096
-
-
Chan-It, W.1
Thongprachum, A.2
Khamrin, P.3
Kobayashi, M.4
Okitsu, S.5
Mizuguchi, M.6
-
17
-
-
85016399336
-
A novel norovirus GII.17 lineage contributed to adult gastroenteritis in Shanghai, China, during the winter of 2014-2015
-
Chen, H., Qian, F., Xu, J., Chan, M., Shen, Z., Zai, S., et al. (2015). A novel norovirus GII.17 lineage contributed to adult gastroenteritis in Shanghai, China, during the winter of 2014-2015. Emerg. Microbes Infect. 4:e67. doi: 10.1038/emi.2015.67
-
(2015)
Emerg. Microbes Infect
, vol.4
-
-
Chen, H.1
Qian, F.2
Xu, J.3
Chan, M.4
Shen, Z.5
Zai, S.6
-
18
-
-
84906969109
-
Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting
-
Cotten, M., Petrova, V., Phan, M. V., Rabaa, M. A., Watson, S. J., Ong, S. H., et al. (2014). Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting. J. Virol. 88, 11056-11069. doi: 10.1128/JVI.01333-14
-
(2014)
J. Virol
, vol.88
, pp. 11056-11069
-
-
Cotten, M.1
Petrova, V.2
Phan, M.V.3
Rabaa, M.A.4
Watson, S.J.5
Ong, S.H.6
-
19
-
-
84856907832
-
Genetic mapping of a highly variable norovirus GII.4 blockade epitope: potential role in escape from human herd immunity
-
Debbink, K., Donaldson, E. F., Lindesmith, L. C., and Baric, R. S. (2012). Genetic mapping of a highly variable norovirus GII.4 blockade epitope: potential role in escape from human herd immunity. J. Virol. 86, 1214-1226. doi: 10.1128/JVI.06189-11
-
(2012)
J. Virol
, vol.86
, pp. 1214-1226
-
-
Debbink, K.1
Donaldson, E.F.2
Lindesmith, L.C.3
Baric, R.S.4
-
20
-
-
84969791255
-
Human norovirus transmission and evolution in a changing world
-
de Graaf, M., van Beek, J., and Koopmans, M. P. (2016). Human norovirus transmission and evolution in a changing world. Nat. Rev. Microbiol. 14, 421-433. doi: 10.1038/nrmicro.2016.48
-
(2016)
Nat. Rev. Microbiol
, vol.14
, pp. 421-433
-
-
de Graaf, M.1
van Beek, J.2
Koopmans, M.P.3
-
21
-
-
84937030697
-
Emergence of a novel GII.17 norovirus-End of the GII.4 era?
-
de Graaf, M., van Beek, J., Vennema, H., Podkolzin, A. T., Hewitt, J., Bucardo, F., et al. (2015). Emergence of a novel GII.17 norovirus-End of the GII.4 era? Euro Surveill. 20L:21178. doi: 10.2807/1560-7917.ES2015.20.26.21178
-
(2015)
Euro Surveill
, vol.20L
, pp. 21178
-
-
de Graaf, M.1
van Beek, J.2
Vennema, H.3
Podkolzin, A.T.4
Hewitt, J.5
Bucardo, F.6
-
22
-
-
84878165314
-
Recombination within the pandemic norovirus GII.4 lineage
-
Eden, J. S., Tanaka, M. M., Boni, M. F., Rawlinson, W. D., and White, P. A. (2013). Recombination within the pandemic norovirus GII.4 lineage. J. Virol. 87, 6270-6282. doi: 10.1128/JVI.03464-12
-
(2013)
J. Virol
, vol.87
, pp. 6270-6282
-
-
Eden, J.S.1
Tanaka, M.M.2
Boni, M.F.3
Rawlinson, W.D.4
White, P.A.5
-
23
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797. doi: 10.1093/nar/gkh340
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
25
-
-
84904430769
-
Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes
-
Faison, W. J., Rostovtsev, A., Castro-Nallar, E., Crandall, K. A., Chumakov, K., Simonyan, V., et al. (2014). Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes. Genomics 104, 1-7. doi: 10.1016/j.ygeno.2014.06.001
-
(2014)
Genomics
, vol.104
, pp. 1-7
-
-
Faison, W.J.1
Rostovtsev, A.2
Castro-Nallar, E.3
Crandall, K.A.4
Chumakov, K.5
Simonyan, V.6
-
26
-
-
84964777952
-
Norovirus recombinant strains isolated from gastroenteritis outbreaks in Southern Brazil, 2004-2011
-
Fumian, T. M., da Silva Ribeiro de Andrade, J., Leite, J. P., and Miagostovich, M. P. (2016). Norovirus recombinant strains isolated from gastroenteritis outbreaks in Southern Brazil, 2004-2011. PLoS ONE 11:e0145391. doi: 10.1371/journal.pone.0145391
-
(2016)
PLoS ONE
, vol.11
-
-
Fumian, T.M.1
da Silva Ribeiro de Andrade, J.2
Leite, J.P.3
Miagostovich, M.P.4
-
27
-
-
84892520167
-
Analysis of early strains of the norovirus pandemic variant GII.4 Sydney 2012 identifies mutations in adaptive sites of the capsid protein
-
Giammanco, G. M., De Grazia, S., Terio, V., Lanave, G., Catella, C., Bonura, F., et al. (2014). Analysis of early strains of the norovirus pandemic variant GII.4 Sydney 2012 identifies mutations in adaptive sites of the capsid protein. Virology 450-451, 355-358. doi: 10.1016/j.virol.2013.12.007
-
(2014)
Virology
, vol.450-451
, pp. 355-358
-
-
Giammanco, G.M.1
De Grazia, S.2
Terio, V.3
Lanave, G.4
Catella, C.5
Bonura, F.6
-
28
-
-
84907193791
-
Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
-
Gire, S. K., Goba, A., Andersen, K. G., Sealfon, R. S., Park, D. J., Kanneh, L., et al. (2014). Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science 345, 1369-1372. doi: 10.1126/science.1259657
-
(2014)
Science
, vol.345
, pp. 1369-1372
-
-
Gire, S.K.1
Goba, A.2
Andersen, K.G.3
Sealfon, R.S.4
Park, D.J.5
Kanneh, L.6
-
29
-
-
34548415971
-
'Caliciviridae: the noroviruses'
-
eds D. M. Knipe and P. Howley (Philadelphia, PA: Lippincott Williams & Wilkins)
-
Green, K. (2013). "Caliciviridae: the noroviruses, "in Fields, 6th Edn., eds D. M. Knipe and P. Howley (Philadelphia, PA: Lippincott Williams & Wilkins), 949.
-
(2013)
Fields, 6th Edn
, pp. 949
-
-
Green, K.1
-
30
-
-
84906515707
-
Norovirus infection in immunocompromised hosts
-
Green, K. Y. (2014). Norovirus infection in immunocompromised hosts. Clin. Microbiol. Infect. 20, 717-723. doi: 10.1111/1469-0691.12761
-
(2014)
Clin. Microbiol. Infect
, vol.20
, pp. 717-723
-
-
Green, K.Y.1
-
31
-
-
84880715196
-
Acute gastroenteritis surveillance through the National Outbreak Reporting System, United States
-
Hall, A. J., Wikswo, M. E., Manikonda, K., Roberts, V. A., Yoder, J. S., and Gould, L. H. (2013). Acute gastroenteritis surveillance through the National Outbreak Reporting System, United States. Emerg. Infect. Dis. 19, 1305-1309. doi: 10.3201/eid1908.130482
-
(2013)
Emerg. Infect. Dis
, vol.19
, pp. 1305-1309
-
-
Hall, A.J.1
Wikswo, M.E.2
Manikonda, K.3
Roberts, V.A.4
Yoder, J.S.5
Gould, L.H.6
-
32
-
-
84977123221
-
A next generation sequencing-based method to study the intra-host genetic diversity of norovirus in patients with acute and chronic infection
-
Hasing, M. E., Hazes, B., Lee, B. E., Preiksaitis, J. K., and Pang, X. L. (2016). A next generation sequencing-based method to study the intra-host genetic diversity of norovirus in patients with acute and chronic infection. BMC Genomics 17:480. doi: 10.1186/s12864-016-2831-y
-
(2016)
BMC Genomics
, vol.17
, pp. 480
-
-
Hasing, M.E.1
Hazes, B.2
Lee, B.E.3
Preiksaitis, J.K.4
Pang, X.L.5
-
33
-
-
84953218815
-
World health organization global estimates and regional comparisons of the burden of foodborne disease in 2010
-
Havelaar, A. H., Kirk, M. D., Torgerson, P. R., Gibb, H. J., Hald, T., Lake, R. J., et al. (2015). World health organization global estimates and regional comparisons of the burden of foodborne disease in 2010. PLoS Med. 12:e1001923. doi: 10.1371/journal.pmed.1001923
-
(2015)
PLoS Med
, vol.12
-
-
Havelaar, A.H.1
Kirk, M.D.2
Torgerson, P.R.3
Gibb, H.J.4
Hald, T.5
Lake, R.J.6
-
34
-
-
84921033923
-
Sequence analysis of the capsid gene during a genotype II.4 dominated norovirus season in one university hospital: identification of possible transmission routes
-
Holzknecht, B. J., Franck, K. T., Nielsen, R. T., Bottiger, B., Fischer, T. K., and Fonager, J. (2015). Sequence analysis of the capsid gene during a genotype II.4 dominated norovirus season in one university hospital: identification of possible transmission routes. PLoS ONE 10:e0115331. doi: 10.1371/journal.pone.0115331
-
(2015)
PLoS ONE
, vol.10
-
-
Holzknecht, B.J.1
Franck, K.T.2
Nielsen, R.T.3
Bottiger, B.4
Fischer, T.K.5
Fonager, J.6
-
35
-
-
84941985284
-
Characterization of hepatitis C virus recombination in cameroon by use of nonspecific next-generation sequencing
-
Iles, J. C., Njouom, R., Foupouapouognigni, Y., Bonsall, D., Bowden, R., Trebes, A., et al. (2015). Characterization of hepatitis C virus recombination in cameroon by use of nonspecific next-generation sequencing. J. Clin. Microbiol. 53, 3155-3164. doi: 10.1128/JCM.00483-15
-
(2015)
J. Clin. Microbiol
, vol.53
, pp. 3155-3164
-
-
Iles, J.C.1
Njouom, R.2
Foupouapouognigni, Y.3
Bonsall, D.4
Bowden, R.5
Trebes, A.6
-
36
-
-
0037388633
-
Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR
-
Kageyama, T., Kojima, S., Shinohara, M., Uchida, K., Fukushi, S., Hoshino, F. B., et al. (2003). Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR. J. Clin. Microbiol. 41, 1548-1557. doi: 10.1128/JCM.41.4.1548-1557.2003
-
(2003)
J. Clin. Microbiol
, vol.41
, pp. 1548-1557
-
-
Kageyama, T.1
Kojima, S.2
Shinohara, M.3
Uchida, K.4
Fukushi, S.5
Hoshino, F.B.6
-
37
-
-
84929649257
-
What is the reservoir of emergent human norovirus strains?
-
Karst, S. M., and Baric, R. S. (2015). What is the reservoir of emergent human norovirus strains? J. Virol. 89, 5756-5759. doi: 10.1128/JVI.03063-14
-
(2015)
J. Virol
, vol.89
, pp. 5756-5759
-
-
Karst, S.M.1
Baric, R.S.2
-
38
-
-
85011997401
-
Phylogeographic analysis of hemorrhagic fever with renal syndrome patients using multiplex PCR-based next generation sequencing
-
Kim, W. K., Kim, J. A., Song, D. H., Lee, D., Kim, Y. C., Lee, S. Y., et al. (2016). Phylogeographic analysis of hemorrhagic fever with renal syndrome patients using multiplex PCR-based next generation sequencing. Sci. Rep. 6:26017. doi: 10.1038/srep26017
-
(2016)
Sci. Rep
, vol.6
, pp. 26017
-
-
Kim, W.K.1
Kim, J.A.2
Song, D.H.3
Lee, D.4
Kim, Y.C.5
Lee, S.Y.6
-
39
-
-
84979299119
-
Investigating intra-host and intra-herd sequence diversity of foot-and-mouth disease virus
-
King, D. J., Freimanis, G. L., Orton, R. J., Waters, R. A., Haydon, D. T., and King, D. P. (2016). Investigating intra-host and intra-herd sequence diversity of foot-and-mouth disease virus. Infect. Genet. Evol. 44, 286-292. doi: 10.1016/j.meegid.2016.07.010
-
(2016)
Infect. Genet. Evol
, vol.44
, pp. 286-292
-
-
King, D.J.1
Freimanis, G.L.2
Orton, R.J.3
Waters, R.A.4
Haydon, D.T.5
King, D.P.6
-
40
-
-
79956339598
-
An automated genotyping tool for enteroviruses and noroviruses
-
Kroneman, A., Vennema, H., Deforche, K., v d Avoort, H., Penaranda, S., Oberste, M. S., et al. (2011). An automated genotyping tool for enteroviruses and noroviruses. J. Clin. Virol. 51, 121-125. doi: 10.1016/j.jcv.2011.03.006
-
(2011)
J. Clin. Virol
, vol.51
, pp. 121-125
-
-
Kroneman, A.1
Vennema, H.2
Deforche, K.3
Avoort, V.D.H.4
Penaranda, S.5
Oberste, M.S.6
-
41
-
-
84880377433
-
Next-generation whole genome sequencing identifies the direction of norovirus transmission in linked patients
-
Kundu, S., Lockwood, J., Depledge, D. P., Chaudhry, Y., Aston, A., Rao, K., et al. (2013). Next-generation whole genome sequencing identifies the direction of norovirus transmission in linked patients. Clin. Infect. Dis. 57, 407-414. doi: 10.1093/cid/cit287
-
(2013)
Clin. Infect. Dis
, vol.57
, pp. 407-414
-
-
Kundu, S.1
Lockwood, J.2
Depledge, D.P.3
Chaudhry, Y.4
Aston, A.5
Rao, K.6
-
42
-
-
80054915847
-
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
-
Li, H. (2011). A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics 27, 2987-2993. doi: 10.1093/bioinformatics/btr509
-
(2011)
Bioinformatics
, vol.27
, pp. 2987-2993
-
-
Li, H.1
-
43
-
-
84964751833
-
A multi-site study of norovirus molecular epidemiology in Australia and New Zealand, 2013-2014
-
Lim, K. L., Hewitt, J., Sitabkhan, A., Eden, J. S., Lun, J., Levy, A., et al. (2016). A multi-site study of norovirus molecular epidemiology in Australia and New Zealand, 2013-2014. PLoS ONE 11:e0145254. doi: 10.1371/journal.pone.0145254
-
(2016)
PLoS ONE
, vol.11
-
-
Lim, K.L.1
Hewitt, J.2
Sitabkhan, A.3
Eden, J.S.4
Lun, J.5
Levy, A.6
-
44
-
-
84874689661
-
Emergence of a norovirus GII.4 strain correlates with changes in evolving blockade epitopes
-
Lindesmith, L. C., Costantini, V., Swanstrom, J., Debbink, K., Donaldson, E. F., Vinje, J., et al. (2013). Emergence of a norovirus GII.4 strain correlates with changes in evolving blockade epitopes. J. Virol. 87, 2803-2813. doi: 10.1128/JVI.03106-12
-
(2013)
J. Virol
, vol.87
, pp. 2803-2813
-
-
Lindesmith, L.C.1
Costantini, V.2
Swanstrom, J.3
Debbink, K.4
Donaldson, E.F.5
Vinje, J.6
-
45
-
-
84988838406
-
A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq
-
Logan, G., Freimanis, G. L., King, D. J., Valdazo-Gonzalez, B., Bachanek-Bankowska, K., Sanderson, N. D., et al. (2014). A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq. BMC Genomics 15:828. doi: 10.1186/1471-2164-15-828
-
(2014)
BMC Genomics
, vol.15
, pp. 828
-
-
Logan, G.1
Freimanis, G.L.2
King, D.J.3
Valdazo-Gonzalez, B.4
Bachanek-Bankowska, K.5
Sanderson, N.D.6
-
46
-
-
0032889281
-
Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
-
Lole, K. S., Bollinger, R. C., Paranjape, R. S., Gadkari, D., Kulkarni, S. S., Novak, N. G., et al. (1999). Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73, 152-160.
-
(1999)
J. Virol
, vol.73
, pp. 152-160
-
-
Lole, K.S.1
Bollinger, R.C.2
Paranjape, R.S.3
Gadkari, D.4
Kulkarni, S.S.5
Novak, N.G.6
-
47
-
-
84929000081
-
Acute gastroenteritis outbreak caused by a GII.6 norovirus
-
Luo, L. F., Qiao, K., Wang, X. G., Ding, K. Y., Su, H. L., Li, C. Z., et al. (2015). Acute gastroenteritis outbreak caused by a GII.6 norovirus. World J. Gastroenterol. 21, 5295-5302. doi: 10.3748/wjg.v21.i17.5295
-
(2015)
World J. Gastroenterol
, vol.21
, pp. 5295-5302
-
-
Luo, L.F.1
Qiao, K.2
Wang, X.G.3
Ding, K.Y.4
Su, H.L.5
Li, C.Z.6
-
48
-
-
84872459923
-
Reconstructing viral quasispecies from NGS amplicon reads
-
Mancuso, N., Tork, B., Skums, P., Ganova-Raeva, L., Mandoiu, I., and Zelikovsky, A. (2011). Reconstructing viral quasispecies from NGS amplicon reads. In Silico Biol. 11, 237-249. doi: 10.3233/ISB-2012-0458
-
(2011)
In Silico Biol
, vol.11
, pp. 237-249
-
-
Mancuso, N.1
Tork, B.2
Skums, P.3
Ganova-Raeva, L.4
Mandoiu, I.5
Zelikovsky, A.6
-
49
-
-
84886466653
-
Evidence for recombination between pandemic GII.4 norovirus strains New Orleans 2009 and Sydney 2012
-
Martella, V., Medici, M. C., De Grazia, S., Tummolo, F., Calderaro, A., Bonura, F., et al. (2013). Evidence for recombination between pandemic GII.4 norovirus strains New Orleans 2009 and Sydney 2012. J. Clin. Microbiol. 51, 3855-3857. doi: 10.1128/JCM.01847-13
-
(2013)
J. Clin. Microbiol
, vol.51
, pp. 3855-3857
-
-
Martella, V.1
Medici, M.C.2
De Grazia, S.3
Tummolo, F.4
Calderaro, A.5
Bonura, F.6
-
50
-
-
85013750548
-
RDP4: detection and analysis of recombination patterns in virus genomes
-
Martin, D. P., Murrell, B., Golden, M., Khoosal, A., and Muhire, B. (2015). RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol. 1:vev003. doi: 10.1093/ve/vev003
-
(2015)
Virus Evol
, vol.1
-
-
Martin, D.P.1
Murrell, B.2
Golden, M.3
Khoosal, A.4
Muhire, B.5
-
51
-
-
74549200287
-
Molecular detection and characterization of noroviruses from children in Botswana
-
Mattison, K., Sebunya, T. K., Shukla, A., Noliwe, L. N., and Bidawid, S. (2010). Molecular detection and characterization of noroviruses from children in Botswana. J. Med. Virol. 82, 321-324. doi: 10.1002/jmv.21682
-
(2010)
J. Med. Virol
, vol.82
, pp. 321-324
-
-
Mattison, K.1
Sebunya, T.K.2
Shukla, A.3
Noliwe, L.N.4
Bidawid, S.5
-
52
-
-
84928482095
-
Human norovirus as a foodborne pathogen: challenges and developments
-
Moore, M. D., Goulter, R. M., and Jaykus, L. A. (2015). Human norovirus as a foodborne pathogen: challenges and developments. Annu. Rev. Food Sci. Technol. 6, 411-433. doi: 10.1146/annurev-food-022814-015643
-
(2015)
Annu. Rev. Food Sci. Technol
, vol.6
, pp. 411-433
-
-
Moore, M.D.1
Goulter, R.M.2
Jaykus, L.A.3
-
53
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L., and Wold, B. (2008). Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5, 621-628. doi: 10.1038/nmeth.1226
-
(2008)
Nat. Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
54
-
-
84937040982
-
Genome of emerging norovirus, GII.17, United States, 2014
-
Parra, G. I., and Green, K. Y. (2015). Genome of emerging norovirus, GII.17, United States, 2014. Emerg. Infect. Dis. 21, 1477-1479 doi: 10.3201/eid2108.150652
-
(2015)
Emerg. Infect. Dis
, vol.21
, pp. 1477-1479
-
-
Parra, G.I.1
Green, K.Y.2
-
55
-
-
84957109044
-
Assessment of the utility of whole genome sequencing of measles virus in the characterisation of outbreaks
-
Penedos, A. R., Myers, R., Hadef, B., Aladin, F., and Brown, K. E. (2015). Assessment of the utility of whole genome sequencing of measles virus in the characterisation of outbreaks. PLoS ONE 10:e0143081. doi: 10.1371/journal.pone.0143081
-
(2015)
PLoS ONE
, vol.10
-
-
Penedos, A.R.1
Myers, R.2
Hadef, B.3
Aladin, F.4
Brown, K.E.5
-
56
-
-
84911395833
-
Choice of reference sequence and assembler for alignment of Listeria monocytogenes short-read sequence data greatly influences rates of error in SNP analyses
-
Pightling, A. W., Petronella, N., and Pagotto, F. (2014). Choice of reference sequence and assembler for alignment of Listeria monocytogenes short-read sequence data greatly influences rates of error in SNP analyses. PLoS ONE 9:e104579. doi: 10.1371/journal.pone.0104579
-
(2014)
PLoS ONE
, vol.9
-
-
Pightling, A.W.1
Petronella, N.2
Pagotto, F.3
-
57
-
-
84894901261
-
One-step RT-droplet digital PCR: a breakthrough in the quantification of waterborne RNA viruses
-
Racki, N., Morisset, D., Gutierrez-Aguirre, I., and Ravnikar, M. (2014). One-step RT-droplet digital PCR: a breakthrough in the quantification of waterborne RNA viruses. Anal. Bioanal. Chem. 406, 661-667. doi: 10.1007/s00216-013-7476-y
-
(2014)
Anal. Bioanal. Chem
, vol.406
, pp. 661-667
-
-
Racki, N.1
Morisset, D.2
Gutierrez-Aguirre, I.3
Ravnikar, M.4
-
58
-
-
37449020884
-
Genotyping of GII.4 and GIIb norovirus RT-PCR amplicons by RFLP analysis
-
Ramirez, S., Giammanco, G. M., De Grazia, S., Colomba, C., Martella, V., and Arista, S. (2008). Genotyping of GII.4 and GIIb norovirus RT-PCR amplicons by RFLP analysis. J. Virol. Methods 147, 250-256. doi: 10.1016/j.jviromet.2007.09.005
-
(2008)
J. Virol. Methods
, vol.147
, pp. 250-256
-
-
Ramirez, S.1
Giammanco, G.M.2
De Grazia, S.3
Colomba, C.4
Martella, V.5
Arista, S.6
-
59
-
-
84986616760
-
Navigating microbiological food safety in the era of whole genome sequencing
-
Ronholm, J., Nasheri, N., Petronella, N., and Pagotto, F. (2016). Navigating microbiological food safety in the era of whole genome sequencing. Clin. Microbiol. Rev. 29, 837-857. doi: 10.1128/CMR.00056-16
-
(2016)
Clin. Microbiol. Rev
, vol.29
, pp. 837-857
-
-
Ronholm, J.1
Nasheri, N.2
Petronella, N.3
Pagotto, F.4
-
60
-
-
84964265402
-
Norovirus infection: replication, manipulation of host, and interaction with the host immune response
-
Sarvestani, S. T., Cotton, B., Fritzlar, S., O'Donnell, T. B., and Mackenzie, J. M. (2016). Norovirus infection: replication, manipulation of host, and interaction with the host immune response. J. Interferon Cytokine Res. 36, 215-225. doi: 10.1089/jir.2015.0124
-
(2016)
J. Interferon Cytokine Res
, vol.36
, pp. 215-225
-
-
Sarvestani, S.T.1
Cotton, B.2
Fritzlar, S.3
O'Donnell, T.B.4
Mackenzie, J.M.5
-
61
-
-
78650979311
-
Foodborne illness acquired in the United States-major pathogens
-
Scallan, E., Hoekstra, R. M., Angulo, F. J., Tauxe, R. V., Widdowson, M. A., Roy, S. L., et al. (2011). Foodborne illness acquired in the United States-major pathogens. Emerg. Infect. Dis. 17, 7-15. doi: 10.3201/eid1701.091101p1
-
(2011)
Emerg. Infect. Dis
, vol.17
, pp. 7-15
-
-
Scallan, E.1
Hoekstra, R.M.2
Angulo, F.J.3
Tauxe, R.V.4
Widdowson, M.A.5
Roy, S.L.6
-
62
-
-
80052288988
-
Structural analysis of histo-blood group antigen binding specificity in a norovirus GII.4 epidemic variant: implications for epochal evolution
-
Shanker, S., Choi, J. M., Sankaran, B., Atmar, R. L., Estes, M. K., and Prasad, B. V. (2011). Structural analysis of histo-blood group antigen binding specificity in a norovirus GII.4 epidemic variant: implications for epochal evolution. J. Virol. 85, 8635-8645. doi: 10.1128/JVI.00848-11
-
(2011)
J. Virol
, vol.85
, pp. 8635-8645
-
-
Shanker, S.1
Choi, J.M.2
Sankaran, B.3
Atmar, R.L.4
Estes, M.K.5
Prasad, B.V.6
-
63
-
-
43349101238
-
Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses
-
Simmonds, P., Karakasiliotis, I., Bailey, D., Chaudhry, Y., Evans, D. J., and Goodfellow, I. G. (2008). Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses. Nucleic Acids Res. 36, 2530-2546. doi: 10.1093/nar/gkn096
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 2530-2546
-
-
Simmonds, P.1
Karakasiliotis, I.2
Bailey, D.3
Chaudhry, Y.4
Evans, D.J.5
Goodfellow, I.G.6
-
64
-
-
84935009609
-
Evaluation of signature erosion in ebola virus due to genomic drift and its impact on the performance of diagnostic assays
-
Sozhamannan, S., Holland, M. Y., Hall, A. T., Negron, D. A., Ivancich, M., Koehler, J. W., et al. (2015). Evaluation of signature erosion in ebola virus due to genomic drift and its impact on the performance of diagnostic assays. Viruses 7, 3130-3154. doi: 10.3390/v7062763
-
(2015)
Viruses
, vol.7
, pp. 3130-3154
-
-
Sozhamannan, S.1
Holland, M.Y.2
Hall, A.T.3
Negron, D.A.4
Ivancich, M.5
Koehler, J.W.6
-
65
-
-
84899553363
-
RAxML version 8, a tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis, A. (2014). RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312-1313. doi: 10.1093/bioinformatics/btu033
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
66
-
-
84991280301
-
Comparison of next-generation sequencing technologies for comprehensive assessment of full-length hepatitis C viral genomes
-
Thomson, E., Ip, C. L., Badhan, A., Christiansen, M. T., Adamson, W., Ansari, M. A., et al. (2016). Comparison of next-generation sequencing technologies for comprehensive assessment of full-length hepatitis C viral genomes. J. Clin. Microbiol. 54, 2470-2484. doi: 10.1128/JCM.00330-16
-
(2016)
J. Clin. Microbiol
, vol.54
, pp. 2470-2484
-
-
Thomson, E.1
Ip, C.L.2
Badhan, A.3
Christiansen, M.T.4
Adamson, W.5
Ansari, M.A.6
-
67
-
-
84891541960
-
Genotypic and epidemiologic trends of norovirus outbreaks in the United States, 2009 to 2013
-
Vega, E., Barclay, L., Gregoricus, N., Shirley, S. H., Lee, D., and Vinje, J. (2014). Genotypic and epidemiologic trends of norovirus outbreaks in the United States, 2009 to 2013. J. Clin. Microbiol. 52, 147-155. doi: 10.1128/JCM.02680-13
-
(2014)
J. Clin. Microbiol
, vol.52
, pp. 147-155
-
-
Vega, E.1
Barclay, L.2
Gregoricus, N.3
Shirley, S.H.4
Lee, D.5
Vinje, J.6
-
68
-
-
84924985007
-
Norovirus genotype profiles associated with foodborne transmission, 1999-2012
-
Verhoef, L., Hewitt, J., Barclay, L., Ahmed, S. M., Lake, R., Hall, A. J., et al. (2015). Norovirus genotype profiles associated with foodborne transmission, 1999-2012. Emerg. Infect. Dis. 21, 592-599. doi: 10.3201/eid2104.141073
-
(2015)
Emerg. Infect. Dis
, vol.21
, pp. 592-599
-
-
Verhoef, L.1
Hewitt, J.2
Barclay, L.3
Ahmed, S.M.4
Lake, R.5
Hall, A.J.6
-
69
-
-
84923053367
-
Advances in laboratory methods for detection and typing of norovirus
-
Vinje, J. (2015). Advances in laboratory methods for detection and typing of norovirus. J. Clin. Microbiol. 53, 373-381. doi: 10.1128/JCM.01535-14
-
(2015)
J. Clin. Microbiol
, vol.53
, pp. 373-381
-
-
Vinje, J.1
-
70
-
-
84876304977
-
Norwalk virus minor capsid protein VP2 associates within the VP1 shell domain
-
Vongpunsawad, S., Venkataram Prasad, B. V., and Estes, M. K. (2013). Norwalk virus minor capsid protein VP2 associates within the VP1 shell domain. J. Virol. 87, 4818-4825. doi: 10.1128/JVI.03508-12
-
(2013)
J. Virol
, vol.87
, pp. 4818-4825
-
-
Vongpunsawad, S.1
Venkataram Prasad, B.V.2
Estes, M.K.3
-
71
-
-
84906512769
-
Evolution of norovirus
-
White, P. A. (2014). Evolution of norovirus. Clin. Microbiol. Infect. 20, 741-745. doi: 10.1111/1469-0691.12746
-
(2014)
Clin. Microbiol. Infect
, vol.20
, pp. 741-745
-
-
White, P.A.1
-
72
-
-
84887354366
-
Whole genome sequencing and de novo assembly identifies Sydney-like variant noroviruses and recombinants during the winter 2012/2013 outbreak in England
-
Wong, T. H., Dearlove, B. L., Hedge, J., Giess, A. P., Piazza, P., Trebes, A., et al. (2013). Whole genome sequencing and de novo assembly identifies Sydney-like variant noroviruses and recombinants during the winter 2012/2013 outbreak in England. Virol. J. 10:335. doi: 10.1186/1743-422X-10-335
-
(2013)
Virol. J
, vol.10
, pp. 335
-
-
Wong, T.H.1
Dearlove, B.L.2
Hedge, J.3
Giess, A.P.4
Piazza, P.5
Trebes, A.6
-
73
-
-
84922580083
-
Genome characterization of a GII.6 norovirus strain identified in China
-
Xue, L., Wu, Q., Kou, X., Cai, W., Zhang, J., and Guo, W. (2015). Genome characterization of a GII.6 norovirus strain identified in China. Infect. Genet. Evol. 31, 110-117. doi: 10.1016/j.meegid.2015.01.027
-
(2015)
Infect. Genet. Evol
, vol.31
, pp. 110-117
-
-
Xue, L.1
Wu, Q.2
Kou, X.3
Cai, W.4
Zhang, J.5
Guo, W.6
-
74
-
-
84920767640
-
The murine norovirus core subgenomic RNA promoter consists of a stable stem-loop that can direct accurate initiation of RNA synthesis
-
Yunus, M. A., Lin, X., Bailey, D., Karakasiliotis, I., Chaudhry, Y., Vashist, S., et al. (2015). The murine norovirus core subgenomic RNA promoter consists of a stable stem-loop that can direct accurate initiation of RNA synthesis. J. Virol. 89, 1218-1229. doi: 10.1128/JVI.02432-14
-
(2015)
J. Virol
, vol.89
, pp. 1218-1229
-
-
Yunus, M.A.1
Lin, X.2
Bailey, D.3
Karakasiliotis, I.4
Chaudhry, Y.5
Vashist, S.6
|