Choice of reference sequence and assembler for alignment of Listeria monocytogenes short-read sequence data greatly influences rates of error in SNP analyses

PLoS ONE

Volumn 9, Issue 8, 2014, Pages

  Pightling, Arthur W ^a   Petronella, Nicholas ^b   Pagotto, Franco ^a  

^a LAURENTIAN FORESTRY CENTRE   (Canada)

^b HEALTH CANADA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; ERROR; FALSE POSITIVE RESULT; GENE SEQUENCE; GENETIC DISTANCE; LISTERIA MONOCYTOGENES; NONHUMAN; QUALITY CONTROL; SEQUENCE ALIGNMENT; SINGLE NUCLEOTIDE POLYMORPHISM; COMPUTER PROGRAM; GENETICS; SEQUENCE ANALYSIS; STANDARDS;

GENOME, BACTERIAL; LISTERIA MONOCYTOGENES; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS; SOFTWARE;

EID: 84911395833     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0104579     Document Type: Article

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