메뉴 건너뛰기




Volumn 31, Issue , 2015, Pages 110-117

Genome characterization of a GII.6 norovirus strain identified in China

Author keywords

Comparative analysis; Complete genome; GII.6; Homology modeling; Norovirus; Phylogenetic tree

Indexed keywords

CAPSID PROTEIN;

EID: 84922580083     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2015.01.027     Document Type: Article
Times cited : (22)

References (43)
  • 1
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: selection of best-fit models of protein evolution
    • Abascal F., Zardoya R., Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 2005, 21:2104-2105.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 2
    • 0034129940 scopus 로고    scopus 로고
    • Genetic classification of "Norwalk-like viruses"
    • Ando T., Noel J.S., Fankhauser R.L. Genetic classification of "Norwalk-like viruses". J. Infect. Dis. 2000, 181:S336-S348.
    • (2000) J. Infect. Dis. , vol.181 , pp. S336-S348
    • Ando, T.1    Noel, J.S.2    Fankhauser, R.L.3
  • 3
    • 32144432437 scopus 로고    scopus 로고
    • The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
    • Arnold K., Bordoli L., Kopp J., Schwede T. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 2006, 22:195-201.
    • (2006) Bioinformatics , vol.22 , pp. 195-201
    • Arnold, K.1    Bordoli, L.2    Kopp, J.3    Schwede, T.4
  • 4
    • 0142060853 scopus 로고    scopus 로고
    • The 3' end of Norwalk virus mRNA contains determinants that regulate the expression and stability of the viral capsid protein VP1: a novel function for the VP2 protein
    • Bertolotti-Ciarlet A., Crawford S.E., Hutson A.M., Estes M.K. The 3' end of Norwalk virus mRNA contains determinants that regulate the expression and stability of the viral capsid protein VP1: a novel function for the VP2 protein. J. Virol. 2003, 77:11603-11615.
    • (2003) J. Virol. , vol.77 , pp. 11603-11615
    • Bertolotti-Ciarlet, A.1    Crawford, S.E.2    Hutson, A.M.3    Estes, M.K.4
  • 8
    • 77956287133 scopus 로고    scopus 로고
    • Complete genome characterization of Genogroup II norovirus strains from India: evidence of recombination in ORF2/3 overlap
    • Chhabra P., Walimbe A.M., Chitambar S.D. Complete genome characterization of Genogroup II norovirus strains from India: evidence of recombination in ORF2/3 overlap. Infect. Genet. Evol. 2010, 10:1101-1109.
    • (2010) Infect. Genet. Evol. , vol.10 , pp. 1101-1109
    • Chhabra, P.1    Walimbe, A.M.2    Chitambar, S.D.3
  • 10
    • 84864453108 scopus 로고    scopus 로고
    • JModelTest 2: more models, new heuristics and parallel computing
    • Darriba D., Taboada G.L., Doallo R., Posada D. JModelTest 2: more models, new heuristics and parallel computing. Nat. Meth. 2012, 9:772.
    • (2012) Nat. Meth. , vol.9 , pp. 772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 13
    • 52049112292 scopus 로고    scopus 로고
    • Norovirus pathogenesis: mechanisms of persistence and immune evasion in human populations
    • Donaldson E.F., Lindesmith L.C., Lobue A.D., Baric R.S. Norovirus pathogenesis: mechanisms of persistence and immune evasion in human populations. Immunol. Rev. 2008, 225:190-211.
    • (2008) Immunol. Rev. , vol.225 , pp. 190-211
    • Donaldson, E.F.1    Lindesmith, L.C.2    Lobue, A.D.3    Baric, R.S.4
  • 14
    • 79954582443 scopus 로고    scopus 로고
    • Clinical and molecular epidemiologic analyses of norovirus-associated sporadic gastroenteritis in adults from Beijing, China
    • Gao Y., Jin M., Cong X., Duan Z.J., Li H.Y., Gun X.L., Zuo Y., Zhang Y.M., Zhang Y., Wei L. Clinical and molecular epidemiologic analyses of norovirus-associated sporadic gastroenteritis in adults from Beijing, China. J. Med. Virol. 2011, 83:1078-1085.
    • (2011) J. Med. Virol. , vol.83 , pp. 1078-1085
    • Gao, Y.1    Jin, M.2    Cong, X.3    Duan, Z.J.4    Li, H.Y.5    Gun, X.L.6    Zuo, Y.7    Zhang, Y.M.8    Zhang, Y.9    Wei, L.10
  • 15
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 2010, 59:307-321.
    • (2010) Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 16
    • 84886298639 scopus 로고    scopus 로고
    • Molecular epidemiology of norovirus infections in symptomatic and asymptomatic children from Bobo Dioulasso, Burkina Faso
    • Huynen P., Mauroy A., Martin C., Savadogo L.G.B., Boreux R., Thiry E., Melin P., De Mol P. Molecular epidemiology of norovirus infections in symptomatic and asymptomatic children from Bobo Dioulasso, Burkina Faso. J. Clin. Virol. 2013, 58:515-521.
    • (2013) J. Clin. Virol. , vol.58 , pp. 515-521
    • Huynen, P.1    Mauroy, A.2    Martin, C.3    Savadogo, L.G.B.4    Boreux, R.5    Thiry, E.6    Melin, P.7    De Mol, P.8
  • 22
    • 79951831701 scopus 로고    scopus 로고
    • Increasing rates of gastroenteritis hospital discharges in US adults and the contribution of norovirus, 1996-2007
    • Lopman B.A., Hall A.J., Curns A.T., Parashar U.D. Increasing rates of gastroenteritis hospital discharges in US adults and the contribution of norovirus, 1996-2007. Clin. Infect. Dis. 2011, 52:466-474.
    • (2011) Clin. Infect. Dis. , vol.52 , pp. 466-474
    • Lopman, B.A.1    Hall, A.J.2    Curns, A.T.3    Parashar, U.D.4
  • 24
    • 79955749247 scopus 로고    scopus 로고
    • Human norovirus infection: surveillance and source tracking
    • Maunula L., von Bonsdorff C.H. Human norovirus infection: surveillance and source tracking. Future Virol. 2011, 6:431-438.
    • (2011) Future Virol. , vol.6 , pp. 431-438
    • Maunula, L.1    von Bonsdorff, C.H.2
  • 25
    • 84857818735 scopus 로고    scopus 로고
    • Marked genomic diversity of norovirus genogroup I strains in a waterborne outbreak
    • Nenonen N.P., Hannoun C., Larsson C.U., Bergstrom T. Marked genomic diversity of norovirus genogroup I strains in a waterborne outbreak. Appl. Environ. Microbiol. 2012, 78:1846-1852.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 1846-1852
    • Nenonen, N.P.1    Hannoun, C.2    Larsson, C.U.3    Bergstrom, T.4
  • 27
    • 84860320596 scopus 로고    scopus 로고
    • Genomic organization and recombination analysis of human norovirus identified from China
    • Shen Q., Zhang W., Yang S.X., Chen Y., Shan T.L., Cui L., Hua X.G. Genomic organization and recombination analysis of human norovirus identified from China. Mol. Biol. Rep. 2012, 39:1275-1281.
    • (2012) Mol. Biol. Rep. , vol.39 , pp. 1275-1281
    • Shen, Q.1    Zhang, W.2    Yang, S.X.3    Chen, Y.4    Shan, T.L.5    Cui, L.6    Hua, X.G.7
  • 28
    • 34547553697 scopus 로고    scopus 로고
    • Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution
    • Shih A.C.C., Hsiao T.C., Ho M.S., Li W.H. Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:6283-6288.
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 6283-6288
    • Shih, A.C.C.1    Hsiao, T.C.2    Ho, M.S.3    Li, W.H.4
  • 31
    • 67849086859 scopus 로고    scopus 로고
    • SEPPA: a computational server for spatial epitope prediction of protein antigens
    • Sun J., Wu D., Xu T.L., Wang X.J., Xu X.L., Tao L., Li Y.X., Cao Z.W. SEPPA: a computational server for spatial epitope prediction of protein antigens. Nucleic Acids Res. 2009, 37:W612-W616.
    • (2009) Nucleic Acids Res. , vol.37 , pp. W612-W616
    • Sun, J.1    Wu, D.2    Xu, T.L.3    Wang, X.J.4    Xu, X.L.5    Tao, L.6    Li, Y.X.7    Cao, Z.W.8
  • 32
    • 77958144531 scopus 로고    scopus 로고
    • Norovirus gastroenteritis, carbohydrate receptors, and animal models
    • Tan M., Jiang X. Norovirus gastroenteritis, carbohydrate receptors, and animal models. PLoS Pathog. 2010, 6:e1000983.
    • (2010) PLoS Pathog. , vol.6 , pp. e1000983
    • Tan, M.1    Jiang, X.2
  • 33
    • 64249140044 scopus 로고    scopus 로고
    • Conservation of carbohydrate binding interfaces - evidence of human HBGA selection in norovirus evolution
    • Tan M., Xia M., Chen Y.T., Bu W.M., Hegde R.S., Meller J., Li X.M., Jiang X. Conservation of carbohydrate binding interfaces - evidence of human HBGA selection in norovirus evolution. PLoS One 2009, 4:e5058.
    • (2009) PLoS One , vol.4 , pp. e5058
    • Tan, M.1    Xia, M.2    Chen, Y.T.3    Bu, W.M.4    Hegde, R.S.5    Meller, J.6    Li, X.M.7    Jiang, X.8
  • 34
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 36
    • 84923053367 scopus 로고    scopus 로고
    • Advances in laboratory methods for detection and typing of norovirus
    • Vinje J. Advances in laboratory methods for detection and typing of norovirus. J. Clin. Microbiol. 2014, 10.1128/JCM.01535-14.
    • (2014) J. Clin. Microbiol.
    • Vinje, J.1
  • 37
    • 84870297384 scopus 로고    scopus 로고
    • Molecular epidemiology of noroviruses in children and adults with acute gastroenteritis in Wuhan, China, 2007-2010
    • Wang Y.H., Zhou D.J., Zhou X., Yang T., Ghosh S., Pang B.B., Peng J.S., Liu M.Q., Hu Q., Kobayashi N. Molecular epidemiology of noroviruses in children and adults with acute gastroenteritis in Wuhan, China, 2007-2010. Arch. Virol. 2012, 157:2417-2424.
    • (2012) Arch. Virol. , vol.157 , pp. 2417-2424
    • Wang, Y.H.1    Zhou, D.J.2    Zhou, X.3    Yang, T.4    Ghosh, S.5    Pang, B.B.6    Peng, J.S.7    Liu, M.Q.8    Hu, Q.9    Kobayashi, N.10
  • 38
    • 84884754649 scopus 로고    scopus 로고
    • Genetic analysis of noroviruses associated with sporadic gastroenteritis during winter in Guangzhou, China
    • Xue L., Wu Q.P., Dong R.M., Kou X.X., Li Y.L., Zhang J.M., Guo W.P. Genetic analysis of noroviruses associated with sporadic gastroenteritis during winter in Guangzhou, China. Foodborne Pathog. Dis. 2013, 10:888-895.
    • (2013) Foodborne Pathog. Dis. , vol.10 , pp. 888-895
    • Xue, L.1    Wu, Q.P.2    Dong, R.M.3    Kou, X.X.4    Li, Y.L.5    Zhang, J.M.6    Guo, W.P.7
  • 39
    • 84880577751 scopus 로고    scopus 로고
    • A simple and novel method for GII norovirus genome clone with generic primers
    • Xue L., Wu Q., Kou X., Zhang J., Guo W. A simple and novel method for GII norovirus genome clone with generic primers. J. Appl. Microbiol. 2013, 115:613-620.
    • (2013) J. Appl. Microbiol. , vol.115 , pp. 613-620
    • Xue, L.1    Wu, Q.2    Kou, X.3    Zhang, J.4    Guo, W.5
  • 40
    • 84885374660 scopus 로고    scopus 로고
    • Complete genome analysis of a novel norovirus GII.4 variant identified in China
    • Xue L., Wu Q.P., Kou X.X., Cai W.C., Zhang J.M., Guo W.P. Complete genome analysis of a novel norovirus GII.4 variant identified in China. Virus Genes 2013, 47:228-234.
    • (2013) Virus Genes , vol.47 , pp. 228-234
    • Xue, L.1    Wu, Q.P.2    Kou, X.X.3    Cai, W.C.4    Zhang, J.M.5    Guo, W.P.6
  • 43
    • 73949096807 scopus 로고    scopus 로고
    • Molecular epidemiology of genogroup II-genotype 4 noroviruses in the United States between 1994 and 2006
    • Zheng D.P., Widdowson M.A., Glass R.I., Vinje J. Molecular epidemiology of genogroup II-genotype 4 noroviruses in the United States between 1994 and 2006. J. Clin. Microbiol. 2010, 48:168-177.
    • (2010) J. Clin. Microbiol. , vol.48 , pp. 168-177
    • Zheng, D.P.1    Widdowson, M.A.2    Glass, R.I.3    Vinje, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.