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Volumn 40, Issue , 2017, Pages 93-103

Escherichia coli HGT: Engineered for high glucose throughput even under slowly growing or resting conditions

Author keywords

Escherichia coli; High glucose uptake; Nitrogen limitation; ppGpp; Stringent response

Indexed keywords

CHARGE DENSITY WAVES; GLUCOSE; NITROGEN;

EID: 85010877020     PISSN: 10967176     EISSN: 10967184     Source Type: Journal    
DOI: 10.1016/j.ymben.2017.01.005     Document Type: Article
Times cited : (37)

References (45)
  • 1
    • 0014198718 scopus 로고
    • Adenosine triphosphate conservation in metabolic regulation. Rat liver citrate cleavage enzyme
    • Atkinson, D.E., Walton, G.M., Adenosine triphosphate conservation in metabolic regulation. Rat liver citrate cleavage enzyme. J. Biol. Chem. 242 (1967), 3239–3241.
    • (1967) J. Biol. Chem. , vol.242 , pp. 3239-3241
    • Atkinson, D.E.1    Walton, G.M.2
  • 2
    • 33750479525 scopus 로고    scopus 로고
    • Acyl carrier protein/SpoT interaction, the switch linking SpoT-dependent stress response to fatty acid metabolism
    • Battesti, A., Bouveret, E., Acyl carrier protein/SpoT interaction, the switch linking SpoT-dependent stress response to fatty acid metabolism. Mol. Microbiol. 62 (2006), 1048–1063, 10.1111/j.1365-2958.2006.05442.x.
    • (2006) Mol. Microbiol. , vol.62 , pp. 1048-1063
    • Battesti, A.1    Bouveret, E.2
  • 3
    • 84928339787 scopus 로고    scopus 로고
    • Stress sigma factor RpoS degradation and translation are sensitive to the state of central metabolism
    • Proc. Natl. Acad. Sci. USA. 112, 5159–5164. doi:.
    • Battesti, A., Majdalani, N., Gottesman, S., 2015. Stress sigma factor RpoS degradation and translation are sensitive to the state of central metabolism. Proc. Natl. Acad. Sci. USA. 112, 5159–5164. doi: http://dx.doi.org/10.1073/pnas.1504639112.
    • (2015)
    • Battesti, A.1    Majdalani, N.2    Gottesman, S.3
  • 4
    • 34547913090 scopus 로고    scopus 로고
    • ppGpp regulation of RpoS degradation via anti-adaptor protein IraP
    • Bougdour, A., Gottesman, S., ppGpp regulation of RpoS degradation via anti-adaptor protein IraP. Proc. Natl. Acad. Sci. USA 104 (2007), 12896–12901, 10.1073/pnas.0705561104.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 12896-12901
    • Bougdour, A.1    Gottesman, S.2
  • 5
    • 84903188814 scopus 로고    scopus 로고
    • Nitrogen stress response and stringent response are coupled in Escherichia coli
    • Brown, D.R., Barton, G., Pan, Z., Buck, M., Wigneshweraraj, S., Nitrogen stress response and stringent response are coupled in Escherichia coli. Nat. Commun., 5, 2014, 4115, 10.1038/ncomms5115.
    • (2014) Nat. Commun. , vol.5 , pp. 4115
    • Brown, D.R.1    Barton, G.2    Pan, Z.3    Buck, M.4    Wigneshweraraj, S.5
  • 6
    • 79951623012 scopus 로고    scopus 로고
    • Metabolic footprint analysis of recombinant Escherichia coli strains during fed-batch fermentations
    • Carneiro, S., Villas-Bôas, S.G., Ferreira, E.C., Rocha, I., Metabolic footprint analysis of recombinant Escherichia coli strains during fed-batch fermentations. Mol. BioSyst. 7 (2011), 899–910, 10.1039/c0mb00143k.
    • (2011) Mol. BioSyst. , vol.7 , pp. 899-910
    • Carneiro, S.1    Villas-Bôas, S.G.2    Ferreira, E.C.3    Rocha, I.4
  • 7
    • 0037417864 scopus 로고    scopus 로고
    • Engineering the metabolism of Escherichia coli W3110 for the conversion of sugar to redox-neutral and oxidized products: homoacetate production
    • Proc. Natl. Acad. Sci. USA. 100, 825–832. doi:.
    • Causey, T.B., Zhou, S., Shanmugam, K.T., Ingram, L.O., 2003. Engineering the metabolism of Escherichia coli W3110 for the conversion of sugar to redox-neutral and oxidized products: homoacetate production. Proc. Natl. Acad. Sci. USA. 100, 825–832. doi: http://dx.doi.org/10.1073/pnas.0337684100.
    • (2003)
    • Causey, T.B.1    Zhou, S.2    Shanmugam, K.T.3    Ingram, L.O.4
  • 8
    • 84898613992 scopus 로고    scopus 로고
    • Environmental dependence of stationary-phase metabolism in Bacillus subtilis and Escherichia coli
    • Chubukov, V., Sauer, U., Environmental dependence of stationary-phase metabolism in Bacillus subtilis and Escherichia coli. Appl. Environ. Microbiol. 80 (2014), 2901–2909, 10.1128/AEM.00061-14.
    • (2014) Appl. Environ. Microbiol. , vol.80 , pp. 2901-2909
    • Chubukov, V.1    Sauer, U.2
  • 10
    • 0342762044 scopus 로고    scopus 로고
    • Improvement in recombinant protein production in ppGpp-deficient Escherichia coli
    • Dedhia, N., Richins, R., Mesina, A., Chen, W., Improvement in recombinant protein production in ppGpp-deficient Escherichia coli. Biotechnol. Bioeng. 53 (1997), 379–386, 10.1002/(SICI)1097-0290(19970220)53:4<379::AID-BIT4>3.0.CO;2-K.
    • (1997) Biotechnol. Bioeng. , vol.53 , pp. 379-386
    • Dedhia, N.1    Richins, R.2    Mesina, A.3    Chen, W.4
  • 11
    • 38649092391 scopus 로고    scopus 로고
    • Transcription profiling of the stringent response in Escherichia coli
    • Durfee, T., Hansen, A.M., Zhi, H., Blattner, F.R., Jin, D.J., Transcription profiling of the stringent response in Escherichia coli. J. Bacteriol. 190 (2008), 1084–1096, 10.1128/JB.01092-07.
    • (2008) J. Bacteriol. , vol.190 , pp. 1084-1096
    • Durfee, T.1    Hansen, A.M.2    Zhi, H.3    Blattner, F.R.4    Jin, D.J.5
  • 12
    • 0022868961 scopus 로고
    • Positive and negative roles of an initiator protein at an origin of replication
    • Proc. Natl. Acad. Sci. USA. 83, 9645–9649. doi:.
    • Filutowicz, M., McEachern, M.J., Helinski, D.R., 1986. Positive and negative roles of an initiator protein at an origin of replication. Proc. Natl. Acad. Sci. USA. 83, 9645–9649. doi: http://dx.doi.org/10.1073/pnas.83.24.9645.
    • (1986)
    • Filutowicz, M.1    McEachern, M.J.2    Helinski, D.R.3
  • 14
    • 0039247210 scopus 로고
    • Comparison of the acid-soluble nucleotides in Escherichia coli at different growth rates
    • Franzen, J.S., Binkley, S.B., Comparison of the acid-soluble nucleotides in Escherichia coli at different growth rates. J. Biol. Chem. 236 (1961), 515–519.
    • (1961) J. Biol. Chem. , vol.236 , pp. 515-519
    • Franzen, J.S.1    Binkley, S.B.2
  • 15
    • 0029985489 scopus 로고    scopus 로고
    • Mutational analysis of the Escherichia coli spoT gene identifies distinct but overlapping regions involved in ppGpp synthesis and degradation
    • Gentry, D.R., Cashel, M., Mutational analysis of the Escherichia coli spoT gene identifies distinct but overlapping regions involved in ppGpp synthesis and degradation. Mol. Microbiol. 19 (1996), 1373–1384, 10.1111/j.1365-2958.1996.tb02480.x.
    • (1996) Mol. Microbiol. , vol.19 , pp. 1373-1384
    • Gentry, D.R.1    Cashel, M.2
  • 16
    • 0027139270 scopus 로고
    • Synthesis of the stationary-phase sigma factor σ(s) is positively regulated by ppGpp
    • Gentry, D.R., Hernandez, V.J., Nguyen, L.H., Jensen, D.B., Cashel, M., Synthesis of the stationary-phase sigma factor σ(s) is positively regulated by ppGpp. J. Bacteriol. 175 (1993), 7982–7989.
    • (1993) J. Bacteriol. , vol.175 , pp. 7982-7989
    • Gentry, D.R.1    Hernandez, V.J.2    Nguyen, L.H.3    Jensen, D.B.4    Cashel, M.5
  • 17
    • 79957471219 scopus 로고    scopus 로고
    • Enzymatic assembly of overlapping DNA fragments
    • Gibson, D.G., Enzymatic assembly of overlapping DNA fragments. Methods Enzym. 498 (2011), 349–361, 10.1016/B978-0-12-385120-8.00015-2.
    • (2011) Methods Enzym. , vol.498 , pp. 349-361
    • Gibson, D.G.1
  • 18
    • 0033050416 scopus 로고    scopus 로고
    • Heat-shock and stringent responses have overlapping protease activity in Escherichia coli
    • Harcum, S.W., Bentley, W.E., Heat-shock and stringent responses have overlapping protease activity in Escherichia coli. Appl. Biochem. Biotechnol. 80 (1999), 23–37, 10.1385/ABAB:80:1:23.
    • (1999) Appl. Biochem. Biotechnol. , vol.80 , pp. 23-37
    • Harcum, S.W.1    Bentley, W.E.2
  • 19
    • 35748932045 scopus 로고    scopus 로고
    • Topology of the global regulatory network of carbon limitation in Escherichia coli
    • Hardiman, T., Lemuth, K., Keller, M.A., Reuss, M., Siemann-Herzberg, M., Topology of the global regulatory network of carbon limitation in Escherichia coli. J. Biotechnol. 132 (2007), 359–374, 10.1016/j.jbiotec.2007.08.029.
    • (2007) J. Biotechnol. , vol.132 , pp. 359-374
    • Hardiman, T.1    Lemuth, K.2    Keller, M.A.3    Reuss, M.4    Siemann-Herzberg, M.5
  • 20
    • 0007825206 scopus 로고
    • Synthesis of guanosine tetra- and pentaphosphate requires the presence of a codon-specific, uncharged transfer ribonucleic acid in the acceptor site of ribosomes
    • Haseltine, W.A., Block, R., Synthesis of guanosine tetra- and pentaphosphate requires the presence of a codon-specific, uncharged transfer ribonucleic acid in the acceptor site of ribosomes. Proc. Natl. Acad. Sci. USA 70 (1973), 1564–1568.
    • (1973) Proc. Natl. Acad. Sci. USA , vol.70 , pp. 1564-1568
    • Haseltine, W.A.1    Block, R.2
  • 21
    • 0037633360 scopus 로고    scopus 로고
    • Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli
    • Herring, C.D., Glasner, J.D., Blattner, F.R., Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli. Gene 311 (2003), 153–163, 10.1016/S0378-1119(03)00585-7.
    • (2003) Gene , vol.311 , pp. 153-163
    • Herring, C.D.1    Glasner, J.D.2    Blattner, F.R.3
  • 22
    • 14244270260 scopus 로고    scopus 로고
    • Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures
    • Hua, Q., Yang, C., Oshima, T., Mori, H., Shimizu, K., Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures. Appl. Environ. Microbiol. 70 (2004), 2354–2366, 10.1128/AEM.70.4.2354.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2354-2366
    • Hua, Q.1    Yang, C.2    Oshima, T.3    Mori, H.4    Shimizu, K.5
  • 23
    • 33747126063 scopus 로고    scopus 로고
    • The effect of intracellular ppGpp levels on glutamate and lysine overproduction in Escherichia coli
    • Imaizumi, A., Kojima, H., Matsui, K., The effect of intracellular ppGpp levels on glutamate and lysine overproduction in Escherichia coli. J. Biotechnol. 125 (2006), 328–337, 10.1016/j.jbiotec.2006.03.015.
    • (2006) J. Biotechnol. , vol.125 , pp. 328-337
    • Imaizumi, A.1    Kojima, H.2    Matsui, K.3
  • 24
    • 0034682744 scopus 로고    scopus 로고
    • Nucleoid proteins stimulate stringently controlled bacterial promoters: a link between the cAMP-CRP and the (p)ppGpp regulons in Escherichia coli
    • Johansson, J., Balsalobre, C., Wang, S.Y., Urbonaviciene, J., Jin, D.J., Sondén, B., Uhlin, B.E., Nucleoid proteins stimulate stringently controlled bacterial promoters: a link between the cAMP-CRP and the (p)ppGpp regulons in Escherichia coli. Cell 102 (2000), 475–485, 10.1016/S0092-8674(00)00052-0.
    • (2000) Cell , vol.102 , pp. 475-485
    • Johansson, J.1    Balsalobre, C.2    Wang, S.Y.3    Urbonaviciene, J.4    Jin, D.J.5    Sondén, B.6    Uhlin, B.E.7
  • 25
    • 0036302723 scopus 로고    scopus 로고
    • The glycolytic flux in Escherichia coli is controlled by the demand for ATP
    • Koebmann, B.J., Westerhoff, H.V., Snoep, J.L., Nilsson, D., Jensen, P.R., The glycolytic flux in Escherichia coli is controlled by the demand for ATP. J. Bacteriol. 184 (2002), 3909–3916, 10.1128/JB.184.14.3909-3916.2002.
    • (2002) J. Bacteriol. , vol.184 , pp. 3909-3916
    • Koebmann, B.J.1    Westerhoff, H.V.2    Snoep, J.L.3    Nilsson, D.4    Jensen, P.R.5
  • 26
    • 77249124977 scopus 로고    scopus 로고
    • Metabolic regulation of Escherichia coli and its gdhA, glnL, gltB, D mutants under different carbon and nitrogen limitations in the continuous culture
    • Kumar, R., Shimizu, K., Metabolic regulation of Escherichia coli and its gdhA, glnL, gltB, D mutants under different carbon and nitrogen limitations in the continuous culture. Microb.Cell Fact., 2010, 9, 10.1186/1475-2859-9-8.
    • (2010) Microb.Cell Fact. , pp. 9
    • Kumar, R.1    Shimizu, K.2
  • 28
    • 84978681142 scopus 로고    scopus 로고
    • Engineering E. coli for large-scale production – strategies considering ATP expenses and transcriptional responses
    • Löffler, M., Simen, J.D., Jäger, G., Schäferhoff, K., Freund, A., Takors, R., Engineering E. coli for large-scale production – strategies considering ATP expenses and transcriptional responses. Metab. Eng. 38 (2016), 73–85.
    • (2016) Metab. Eng. , vol.38 , pp. 73-85
    • Löffler, M.1    Simen, J.D.2    Jäger, G.3    Schäferhoff, K.4    Freund, A.5    Takors, R.6
  • 29
    • 82355181976 scopus 로고    scopus 로고
    • Transposon-based and plasmid-based genetic tools for editing genomes of gram-negative bacteria
    • Martínez-García, E., de Lorenzo, V., Transposon-based and plasmid-based genetic tools for editing genomes of gram-negative bacteria. Methods Mol. Biol. 813 (2012), 267–283, 10.1007/978-1-61779-412-4_16.
    • (2012) Methods Mol. Biol. , vol.813 , pp. 267-283
    • Martínez-García, E.1    de Lorenzo, V.2
  • 30
    • 80053648189 scopus 로고    scopus 로고
    • Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440
    • Martínez-García, E., de Lorenzo, V., Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440. Environ. Microbiol. 13 (2011), 2702–2716, 10.1111/j.1462-2920.2011.02538.x.
    • (2011) Environ. Microbiol. , vol.13 , pp. 2702-2716
    • Martínez-García, E.1    de Lorenzo, V.2
  • 31
    • 85015497257 scopus 로고    scopus 로고
    • Bacterial strain and method for high throughput of sugar in the microbial conversion into biosynthetic products
    • EP 16000936.1-1401
    • Michalowski, A., Siemann-Herzberg, M., Takors, R., Bacterial strain and method for high throughput of sugar in the microbial conversion into biosynthetic products. Eur. Union Pat., 2016 EP 16000936.1-1401.
    • (2016) Eur. Union Pat.
    • Michalowski, A.1    Siemann-Herzberg, M.2    Takors, R.3
  • 32
    • 0034866076 scopus 로고    scopus 로고
    • Comparative genomics and evolution of genes encoding bacterial (p)ppGpp synthetases/hydrolases (the Rel, RelA and SpoT proteins)
    • Mittenhuber, G., Comparative genomics and evolution of genes encoding bacterial (p)ppGpp synthetases/hydrolases (the Rel, RelA and SpoT proteins). J. Mol. Microbiol. Biotechnol. 3 (2001), 585–600.
    • (2001) J. Mol. Microbiol. Biotechnol. , vol.3 , pp. 585-600
    • Mittenhuber, G.1
  • 34
    • 36849001752 scopus 로고    scopus 로고
    • A charge reversal differentiates (p)ppGpp synthesis by monofunctional and bifunctional Rel proteins
    • Sajish, M., Tiwari, D., Rananaware, D., Nandicoori, V.K., Prakash, B., A charge reversal differentiates (p)ppGpp synthesis by monofunctional and bifunctional Rel proteins. J. Biol. Chem. 282 (2007), 34977–34983, 10.1074/jbc.M704828200.
    • (2007) J. Biol. Chem. , vol.282 , pp. 34977-34983
    • Sajish, M.1    Tiwari, D.2    Rananaware, D.3    Nandicoori, V.K.4    Prakash, B.5
  • 36
    • 0032753923 scopus 로고    scopus 로고
    • Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism
    • (doi: PMC94132)
    • Sauer, U., Lasko, D.R., Fiaux, J., Hochuli, M., Glaser, R., Szyperski, T., Wüthrich, K., Bailey, J.E., Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism. J. Bacteriol. 181 (1999), 6679–6688 (doi: PMC94132).
    • (1999) J. Bacteriol. , vol.181 , pp. 6679-6688
    • Sauer, U.1    Lasko, D.R.2    Fiaux, J.3    Hochuli, M.4    Glaser, R.5    Szyperski, T.6    Wüthrich, K.7    Bailey, J.E.8
  • 37
    • 84911362320 scopus 로고    scopus 로고
    • Phosphate limited fed-batch processes: impact on carbon usage and energy metabolism in Escherichia coli
    • Schuhmacher, T., Löffler, M., Hurler, T., Takors, R., Phosphate limited fed-batch processes: impact on carbon usage and energy metabolism in Escherichia coli. J. Biotechnol. 190 (2014), 96–104, 10.1016/j.jbiotec.2014.04.025.
    • (2014) J. Biotechnol. , vol.190 , pp. 96-104
    • Schuhmacher, T.1    Löffler, M.2    Hurler, T.3    Takors, R.4
  • 38
    • 84862167117 scopus 로고    scopus 로고
    • Scale-up of microbial processes: impacts, tools and open questions
    • Takors, R., Scale-up of microbial processes: impacts, tools and open questions. J. Biotechnol. 160 (2012), 3–9, 10.1016/j.jbiotec.2011.12.010.
    • (2012) J. Biotechnol. , vol.160 , pp. 3-9
    • Takors, R.1
  • 39
    • 78149245282 scopus 로고    scopus 로고
    • Genome-derived minimal metabolic models for Escherichia coli MG1655 with estimated in vivo respiratory ATP stoichiometry
    • Taymaz-Nikerel, H., Borujeni, A.E., Verheijen, P.J.T., Heijnen, J.J., van Gulik, W.M., Genome-derived minimal metabolic models for Escherichia coli MG1655 with estimated in vivo respiratory ATP stoichiometry. Biotechnol. Bioeng. 107 (2010), 369–381, 10.1002/bit.22802.
    • (2010) Biotechnol. Bioeng. , vol.107 , pp. 369-381
    • Taymaz-Nikerel, H.1    Borujeni, A.E.2    Verheijen, P.J.T.3    Heijnen, J.J.4    van Gulik, W.M.5
  • 40
    • 0035542686 scopus 로고    scopus 로고
    • Comparison of ∆relA strains of Escherichia coli and Salmonella enterica serovar typhimurium suggests a role for ppGpp in attenuation regulation of branched-chain amino acid biosynthesis
    • Tedin, K., Norel, F., Comparison of ∆relA strains of Escherichia coli and Salmonella enterica serovar typhimurium suggests a role for ppGpp in attenuation regulation of branched-chain amino acid biosynthesis. J. Bacteriol. 183 (2001), 6184–6196, 10.1128/JB.183.21.6184-6196.2001.
    • (2001) J. Bacteriol. , vol.183 , pp. 6184-6196
    • Tedin, K.1    Norel, F.2
  • 41
    • 84900808181 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli to enhance hydrogen production from glycerol
    • Tran, K.T., Maeda, T., Wood, T.K., Metabolic engineering of Escherichia coli to enhance hydrogen production from glycerol. Appl. Microbiol. Biotechnol. 98 (2014), 4757–4770, 10.1007/s00253-014-5600-3.
    • (2014) Appl. Microbiol. Biotechnol. , vol.98 , pp. 4757-4770
    • Tran, K.T.1    Maeda, T.2    Wood, T.K.3
  • 42
  • 43
    • 84946069451 scopus 로고    scopus 로고
    • UniProt: a hub for protein information
    • UniProt Consortium, UniProt: a hub for protein information. Nucleic Acids Res. 43 (2015), D204–D212, 10.1093/nar/gku989.
    • (2015) Nucleic Acids Res. , vol.43 , pp. D204-D212
    • UniProt Consortium1
  • 44
    • 0025992789 scopus 로고
    • Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations
    • Xiao, H., Kalman, M., Ikehara, K., Zemel, S., Glaser, G., Cashel, M., Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations. J. Biol. Chem. 266 (1991), 5980–5990.
    • (1991) J. Biol. Chem. , vol.266 , pp. 5980-5990
    • Xiao, H.1    Kalman, M.2    Ikehara, K.3    Zemel, S.4    Glaser, G.5    Cashel, M.6
  • 45
    • 55049095515 scopus 로고    scopus 로고
    • High glycolytic flux improves pyruvate production by a metabolically engineered Escherichia coli strain
    • Zhu, Y., Eiteman, M.A., Altman, R., Altman, E., High glycolytic flux improves pyruvate production by a metabolically engineered Escherichia coli strain. Appl. Environ. Microbiol. 74 (2008), 6649–6655, 10.1128/AEM.01610-08.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 6649-6655
    • Zhu, Y.1    Eiteman, M.A.2    Altman, R.3    Altman, E.4


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