-
1
-
-
84890296671
-
Microbes in nature are limited by carbon and energy: the starving-survival lifestyle in soil and consequences for estimating microbial rates
-
Hobbie JE, Hobbie EA. 2013. Microbes in nature are limited by carbon and energy: the starving-survival lifestyle in soil and consequences for estimating microbial rates. Front. Microbiol. 4:324. http://dx.doi.org/10.3389/fmicb.2013.00324.
-
(2013)
Front. Microbiol
, vol.4
, pp. 324
-
-
Hobbie, J.E.1
Hobbie, E.A.2
-
2
-
-
84898618487
-
Microbial ecology: an evolutionary approach
-
New York, NY
-
McArthur JV. 2006. Microbial ecology: an evolutionary approach. Academic Press, New York, NY.
-
(2006)
Academic Press
-
-
McArthur, J.V.1
-
3
-
-
84864564551
-
Nitrogen and phosphorus limitation over long-term ecosystem development in terrestrial ecosystems
-
Menge DNL, Hedin LO, Pacala SW. 2012. Nitrogen and phosphorus limitation over long-term ecosystem development in terrestrial ecosystems. PLoS One 7:e42045. http://dx.doi.org/10.1371/journal.pone.0042045.
-
(2012)
PLoS One
, vol.7
-
-
Menge, D.N.L.1
Hedin, L.O.2
Pacala, S.W.3
-
4
-
-
79953323267
-
Cannibalism: a social behavior in sporulating Bacillus subtilis
-
González-Pastor JE. 2011. Cannibalism: a social behavior in sporulating Bacillus subtilis. FEMS Microbiol. Rev. 35:415-424. http://dx.doi.org/10.1111/j.1574-6976.2010.00253.x.
-
(2011)
FEMS Microbiol. Rev
, vol.35
, pp. 415-424
-
-
González-Pastor, J.E.1
-
5
-
-
0030457111
-
Molecular genetics of sporulation in Bacillus subtilis
-
Stragier P, Losick R. 1996. Molecular genetics of sporulation in Bacillus subtilis. Annu. Rev. Genet. 30:297-341. http://dx.doi.org/10.1146/annurev.genet.30.1.297.
-
(1996)
Annu. Rev. Genet
, vol.30
, pp. 297-341
-
-
Stragier, P.1
Losick, R.2
-
6
-
-
0025915346
-
Bactericidal effects of antibiotics on slowly growing and nongrowing bacteria
-
Eng RH, Padberg FT, Smith SM, Tan EN, Cherubin CE. 1991. Bactericidal effects of antibiotics on slowly growing and nongrowing bacteria. Antimicrob. Agents Chemother. 35:1824-1828. http://dx.doi.org/10.1128/AAC.35.9.1824.
-
(1991)
Antimicrob. Agents Chemother
, vol.35
, pp. 1824-1828
-
-
Eng, R.H.1
Padberg, F.T.2
Smith, S.M.3
Tan, E.N.4
Cherubin, C.E.5
-
7
-
-
33845607284
-
Persister cells, dormancy and infectious disease
-
Lewis K. 2007. Persister cells, dormancy and infectious disease. Nat. Rev. Microbiol. 5:48-56. http://dx.doi.org/10.1038/nrmicro1557.
-
(2007)
Nat. Rev. Microbiol
, vol.5
, pp. 48-56
-
-
Lewis, K.1
-
8
-
-
84859429244
-
Mycobacterium tuberculosis: success through dormancy
-
Gengenbacher M, Kaufmann SHE. 2012. Mycobacterium tuberculosis: success through dormancy. FEMS Microbiol. Rev. 36:514-532. http://dx.doi.org/10.1111/j.1574-6976.2012.00331.x.
-
(2012)
FEMS Microbiol. Rev
, vol.36
, pp. 514-532
-
-
Gengenbacher, M.1
Kaufmann, S.H.E.2
-
9
-
-
31544474634
-
Long-term survival during stationary phase: evolution and the GASP phenotype
-
Finkel SE. 2006. Long-term survival during stationary phase: evolution and the GASP phenotype. Nat. Rev. Microbiol. 4:113-120. http://dx.doi.org/10.1038/nrmicro1340.
-
(2006)
Nat. Rev. Microbiol
, vol.4
, pp. 113-120
-
-
Finkel, S.E.1
-
10
-
-
84865040774
-
13C-flux analysis reveals NADPH-balancing transhydrogenation cycles in stationary phase of nitrogen-starving Bacillus subtilis
-
13C-flux analysis reveals NADPH-balancing transhydrogenation cycles in stationary phase of nitrogen-starving Bacillus subtilis. J. Biol. Chem. 287:27959-27970. http://dx.doi.org/10.1074/jbc.M112.366492.
-
(2012)
J. Biol. Chem
, vol.287
, pp. 27959-27970
-
-
Rühl, M.1
Coq, D.L.2
Aymerich, S.3
Sauer, U.4
-
11
-
-
0035968318
-
Trehalose accumulation during cellular stress protects cells and cellular proteins from damage by oxygen radicals
-
Benaroudj N, Lee DH, Goldberg AL. 2001. Trehalose accumulation during cellular stress protects cells and cellular proteins from damage by oxygen radicals. J. Biol. Chem. 276:24261-24267. http://dx.doi.org/10.1074/jbc.M101487200.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 24261-24267
-
-
Benaroudj, N.1
Lee, D.H.2
Goldberg, A.L.3
-
12
-
-
76849112730
-
Study of stationary phase metabolism via isotopomer analysis of amino acids from an isolated protein
-
Shaikh AS, Tang YJ, Mukhopadhyay A, Martín HG, Gin J, Benke PI, Keasling JD. 2010. Study of stationary phase metabolism via isotopomer analysis of amino acids from an isolated protein. Biotechnol. Prog. 26:52-56. http://dx.doi.org/10.1002/btpr.325.
-
(2010)
Biotechnol. Prog
, vol.26
, pp. 52-56
-
-
Shaikh, A.S.1
Tang, Y.J.2
Mukhopadhyay, A.3
Martín, H.G.4
Gin, J.5
Benke, P.I.6
Keasling, J.D.7
-
13
-
-
84865142847
-
Microbial engineering for the production of advanced biofuels
-
Peralta-Yahya PP, Zhang F, del Cardayre SB, Keasling JD. 2012. Microbial engineering for the production of advanced biofuels. Nature 488: 320-328. http://dx.doi.org/10.1038/nature11478.
-
(2012)
Nature
, vol.488
, pp. 320-328
-
-
Peralta-Yahya, P.P.1
Zhang, F.2
del Cardayre, S.B.3
Keasling, J.D.4
-
14
-
-
69449091591
-
Quantitative physiology of Saccharomyces cerevisiae at near-zero specific growth rates
-
Boender LGM, de Hulster EAF, van Maris AJA, Daran-Lapujade PAS, Pronk JT. 2009. Quantitative physiology of Saccharomyces cerevisiae at near-zero specific growth rates. Appl. Environ. Microbiol. 75:5607-5614. http://dx.doi.org/10.1128/AEM.00429-09.
-
(2009)
Appl. Environ. Microbiol
, vol.75
, pp. 5607-5614
-
-
Boender, L.G.M.1
de Hulster, E.A.F.2
van Maris, A.J.A.3
Daran-Lapujade, P.A.S.4
Pronk, J.T.5
-
15
-
-
78651569539
-
Oil accumulation in the model green alga Chlamydomonas reinhardtii: characterization, variability between common laboratory strains and relationship with starch reserves
-
Siaut M, Cuiné S, Cagnon C, Fessler B, Nguyen M, Carrier P, Beyly A, Beisson F, Triantaphylidès C, Li-Beisson Y, Peltier G. 2011. Oil accumulation in the model green alga Chlamydomonas reinhardtii: characterization, variability between common laboratory strains and relationship with starch reserves. BMC Biotechnol. 11:7. http://dx.doi.org/10.1186/1472-6750-11-7.
-
(2011)
BMC Biotechnol
, vol.11
, pp. 7
-
-
Siaut, M.1
Cuiné, S.2
Cagnon, C.3
Fessler, B.4
Nguyen, M.5
Carrier, P.6
Beyly, A.7
Beisson, F.8
Triantaphylidès, C.9
Li-Beisson, Y.10
Peltier, G.11
-
16
-
-
13844253686
-
Selection of quiescent Escherichia coli with high metabolic activity
-
Sonderegger M, Schümperli M, Sauer U. 2005. Selection of quiescent Escherichia coli with high metabolic activity. Metab. Eng. 7:4-9. http://dx.doi.org/10.1016/j.ymben.2004.05.005.
-
(2005)
Metab. Eng
, vol.7
, pp. 4-9
-
-
Sonderegger, M.1
Schümperli, M.2
Sauer, U.3
-
18
-
-
0027383520
-
The stationary phase of the bacterial life cycle
-
Kolter R, Siegele DA, Tormo A. 1993. The stationary phase of the bacterial life cycle. Annu. Rev. Microbiol. 47:855-874. http://dx.doi.org/10.1146/annurev.mi.47.100193.004231.
-
(1993)
Annu. Rev. Microbiol
, vol.47
, pp. 855-874
-
-
Kolter, R.1
Siegele, D.A.2
Tormo, A.3
-
19
-
-
35848954992
-
SigB-dependent general stress response in Bacillus subtilis and related Gram-positive bacteria
-
Hecker M, Pané-Farré J, Völker U. 2007. SigB-dependent general stress response in Bacillus subtilis and related Gram-positive bacteria. Annu. Rev. Microbiol. 61:215-236. http://dx.doi.org/10.1146/annurev.micro.61.080706.093445.
-
(2007)
Annu. Rev. Microbiol
, vol.61
, pp. 215-236
-
-
Hecker, M.1
Pané-Farré, J.2
Völker, U.3
-
20
-
-
8844286124
-
Sporulation of Bacillus subtilis
-
Piggot PJ, Hilbert DW. 2004. Sporulation of Bacillus subtilis. Curr. Opin. Microbiol. 7:579-586. http://dx.doi.org/10.1016/j.mib.2004.10.001.
-
(2004)
Curr. Opin. Microbiol
, vol.7
, pp. 579-586
-
-
Piggot, P.J.1
Hilbert, D.W.2
-
21
-
-
0018663903
-
The decrease of guanine nucleotides initiates sporulation of Bacillus subtilis
-
Lopez JM, Marks CL, Freese E. 1979. The decrease of guanine nucleotides initiates sporulation of Bacillus subtilis. Biochim. Biophys. Acta 587:238-252. http://dx.doi.org/10.1016/0304-4165(79)90357-X.
-
(1979)
Biochim. Biophys. Acta
, vol.587
, pp. 238-252
-
-
Lopez, J.M.1
Marks, C.L.2
Freese, E.3
-
22
-
-
27744450676
-
Escherichia coli starvation diets: essential nutrients weigh in distinctly
-
Peterson CN, Mandel MJ, Silhavy TJ. 2005. Escherichia coli starvation diets: essential nutrients weigh in distinctly. J. Bacteriol. 187:7549-7553. http://dx.doi.org/10.1128/JB.187.22.7549-7553.2005.
-
(2005)
J. Bacteriol
, vol.187
, pp. 7549-7553
-
-
Peterson, C.N.1
Mandel, M.J.2
Silhavy, T.J.3
-
23
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
2006.0008
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:2006.0008. http://dx.doi.org/10.1038/msb4100050.
-
(2006)
Mol. Syst. Biol
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
24
-
-
33746415885
-
A comprehensive library of fluorescent transcriptional reporters for Escherichia coli
-
Zaslaver A, Bren A, Ronen M, Itzkovitz S, Kikoin I, Shavit S, Liebermeister W, Surette MG, Alon U. 2006. A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3:623-628. http://dx.doi.org/10.1038/nmeth895.
-
(2006)
Nat. Methods
, vol.3
, pp. 623-628
-
-
Zaslaver, A.1
Bren, A.2
Ronen, M.3
Itzkovitz, S.4
Kikoin, I.5
Shavit, S.6
Liebermeister, W.7
Surette, M.G.8
Alon, U.9
-
25
-
-
0347986769
-
Genome engineering reveals large dispensable regions in Bacillus subtilis
-
Westers H, Dorenbos R, van Dijl JM, Kabel J, Flanagan T, Devine KM, Jude F, Séror SJ, Beekman AC, Darmon E, Eschevins C, de Jong A, Bron S, Kuipers OP, Albertini AM, Antelmann H, Hecker M, Zamboni N, Sauer U, Bruand C, Ehrlich DS, Alonso JC, Salas M, Quax WJ. 2003. Genome engineering reveals large dispensable regions in Bacillus subtilis. Mol. Biol. Evol. 20:2076-2090. http://dx.doi.org/10.1093/molbev/msg219.
-
(2003)
Mol. Biol. Evol
, vol.20
, pp. 2076-2090
-
-
Westers, H.1
Dorenbos, R.2
van Dijl, J.M.3
Kabel, J.4
Flanagan, T.5
Devine, K.M.6
Jude, F.7
Séror, S.J.8
Beekman, A.C.9
Darmon, E.10
Eschevins, C.11
de Jong, A.12
Bron, S.13
Kuipers, O.P.14
Albertini, A.M.15
Antelmann, H.16
Hecker, M.17
Zamboni, N.18
Sauer, U.19
Bruand, C.20
Ehrlich, D.S.21
Alonso, J.C.22
Salas, M.23
Quax, W.J.24
more..
-
26
-
-
84871769668
-
Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model
-
Tanaka K, Henry CS, Zinner JF, Jolivet E, Cohoon MP, Xia F, Bidnenko V, Ehrlich SD, Stevens RL, Noirot P. 2013. Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model. Nucleic Acids Res. 41:687-699. http://dx.doi.org/10.1093/nar/gks963.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 687-699
-
-
Tanaka, K.1
Henry, C.S.2
Zinner, J.F.3
Jolivet, E.4
Cohoon, M.P.5
Xia, F.6
Bidnenko, V.7
Ehrlich, S.D.8
Stevens, R.L.9
Noirot, P.10
-
27
-
-
0141742610
-
Influence of Bacillus subtilis phoR on cell wall anionic polymers
-
Müller JP, An Z, Merad T, Hancock IC, Harwood CR. 1997. Influence of Bacillus subtilis phoR on cell wall anionic polymers. Microbiology 143: 947-956. http://dx.doi.org/10.1099/00221287-143-3-947.
-
(1997)
Microbiology
, vol.143
, pp. 947-956
-
-
Müller, J.P.1
An, Z.2
Merad, T.3
Hancock, I.C.4
Harwood, C.R.5
-
28
-
-
84927781592
-
Reconstruction and use of microbial metabolic networks: the core Escherichia coli metabolic model as an educational guide.
-
ASM Press, Washington, DC. 1 February.Chapter 10.2.1 Karp PD
-
Orth JD, Fleming RM, Palsson BØ. 1 February 2010. Chapter 10.2.1. Reconstruction and use of microbial metabolic networks: the core Escherichia coli metabolic model as an educational guide. In Karp PD (ed), EcoSal-Escherichia coli and Salmonella: cellular and molecular biology. ASM Press, Washington, DC. http://dx.doi.org/10.1128/ecosalplus.10.2.1.
-
(2010)
EcoSal-Escherichia coli and Salmonella: cellular and molecular biology
-
-
Orth, J.D.1
Fleming, R.M.2
Palsson, BØ.3
-
29
-
-
34548023950
-
Acidic acetonitrile for cellular metabolome extraction from Escherichia coli
-
Rabinowitz JD, Kimball E. 2007. Acidic acetonitrile for cellular metabolome extraction from Escherichia coli. Anal. Chem. 79:6167-6173. http://dx.doi.org/10.1021/ac070470c.
-
(2007)
Anal. Chem
, vol.79
, pp. 6167-6173
-
-
Rabinowitz, J.D.1
Kimball, E.2
-
30
-
-
77952985821
-
Ultrahigh performance liquid chromatography-tandem mass spectrometry method for fast and robust quantification of anionic and aromatic metabolites
-
Büscher JM, Moco S, Sauer U, Zamboni N. 2010. Ultrahigh performance liquid chromatography-tandem mass spectrometry method for fast and robust quantification of anionic and aromatic metabolites. Anal. Chem. 82:4403-4412. http://dx.doi.org/10.1021/ac100101d.
-
(2010)
Anal. Chem
, vol.82
, pp. 4403-4412
-
-
Büscher, J.M.1
Moco, S.2
Sauer, U.3
Zamboni, N.4
-
31
-
-
0014141353
-
Magnesium-limited growth of Bacillus subtilis, in pure and mixed cultures, in a chemostat
-
Tempest DW, Dicks JW, Meers JL. 1967. Magnesium-limited growth of Bacillus subtilis, in pure and mixed cultures, in a chemostat. J. Gen. Microbiol. 49:139-147. http://dx.doi.org/10.1099/00221287-49-1-139.
-
(1967)
J. Gen. Microbiol
, vol.49
, pp. 139-147
-
-
Tempest, D.W.1
Dicks, J.W.2
Meers, J.L.3
-
32
-
-
38749112941
-
Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast
-
Brauer MJ, Huttenhower C, Airoldi EM, Rosenstein R, Matese JC, Gresham D, Boer VM, Troyanskaya OG, Botstein D. 2008. Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast. Mol. Biol. Cell 19:352-367. http://dx.doi.org/10.1091/mbc.E07-08-0779.
-
(2008)
Mol. Biol. Cell
, vol.19
, pp. 352-367
-
-
Brauer, M.J.1
Huttenhower, C.2
Airoldi, E.M.3
Rosenstein, R.4
Matese, J.C.5
Gresham, D.6
Boer, V.M.7
Troyanskaya, O.G.8
Botstein, D.9
-
33
-
-
84872329554
-
Decoupling nutrient signaling from growth rate causes aerobic glycolysis and deregulation of cell size and gene expression
-
Slavov N, Botstein D. 2013. Decoupling nutrient signaling from growth rate causes aerobic glycolysis and deregulation of cell size and gene expression. Mol. Biol. Cell 24:157-168. http://dx.doi.org/10.1091/mbc.E12-09-0670.
-
(2013)
Mol. Biol. Cell
, vol.24
, pp. 157-168
-
-
Slavov, N.1
Botstein, D.2
-
34
-
-
0033818517
-
Resistance of Bacillus endospores to extreme terrestrial and extraterrestrial environments
-
Nicholson WL, Munakata N, Horneck G, Melosh HJ, Setlow P. 2000. Resistance of Bacillus endospores to extreme terrestrial and extraterrestrial environments. Microbiol. Mol. Biol. Rev. 64:548-572. http://dx.doi.org/10.1128/MMBR.64.3.548-572.2000.
-
(2000)
Microbiol. Mol. Biol. Rev
, vol.64
, pp. 548-572
-
-
Nicholson, W.L.1
Munakata, N.2
Horneck, G.3
Melosh, H.J.4
Setlow, P.5
-
35
-
-
0015418183
-
Differential amino acid requirements for sporulation in Bacillus subtilis
-
Doering JL, Bott KF. 1972. Differential amino acid requirements for sporulation in Bacillus subtilis. J. Bacteriol. 112:345-355.
-
(1972)
J. Bacteriol
, vol.112
, pp. 345-355
-
-
Doering, J.L.1
Bott, K.F.2
-
36
-
-
0031711025
-
Regulation of the Bacillus subtilis GlcT antiterminator protein by components of the phosphotransferase system
-
Bachem S, Stülke J. 1998. Regulation of the Bacillus subtilis GlcT antiterminator protein by components of the phosphotransferase system. J. Bacteriol. 180:5319-5326.
-
(1998)
J. Bacteriol
, vol.180
, pp. 5319-5326
-
-
Bachem, S.1
Stülke, J.2
-
37
-
-
84857672615
-
Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism
-
Büscher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, Hessling B, Kleijn RJ, Le Chat L, Lecointe F, Mäder U, Nicolas P, Piersma S, Rügheimer F, Becher D, Bessieres P, Bidnenko E, Denham EL, Dervyn E, Devine KM, Doherty G, Drulhe S, Felicori L, Fogg MJ, Goelzer A, Hansen A, Harwood CR, Hecker M, Hubner S, Hultschig C, Jarmer H, Klipp E, Leduc A, Lewis P, Molina F, Noirot P, Peres S, Pigeonneau N, Pohl S, Rasmussen S, Rinn B, Schaffer M, Schnidder J, Schwikowski B, Van Dijl JM, Veiga P, Walsh S, Wilkinson AJ, Stelling J, Aymerich S, Sauer U. 2012. Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism. Science 335:1099-1103. http://dx.doi.org/10.1126/science.1206871.
-
(2012)
Science
, vol.335
, pp. 1099-1103
-
-
Büscher, J.M.1
Liebermeister, W.2
Jules, M.3
Uhr, M.4
Muntel, J.5
Botella, E.6
Hessling, B.7
Kleijn, R.J.8
Le Chat, L.9
Lecointe, F.10
Mäder, U.11
Nicolas, P.12
Piersma, S.13
Rügheimer, F.14
Becher, D.15
Bessieres, P.16
Bidnenko, E.17
Denham, E.L.18
Dervyn, E.19
Devine, K.M.20
Doherty, G.21
Drulhe, S.22
Felicori, L.23
Fogg, M.J.24
Goelzer, A.25
Hansen, A.26
Harwood, C.R.27
Hecker, M.28
Hubner, S.29
Hultschig, C.30
Jarmer, H.31
Klipp, E.32
Leduc, A.33
Lewis, P.34
Molina, F.35
Noirot, P.36
Peres, S.37
Pigeonneau, N.38
Pohl, S.39
Rasmussen, S.40
Rinn, B.41
Schaffer, M.42
Schnidder, J.43
Schwikowski, B.44
Van Dijl, J.M.45
Veiga, P.46
Walsh, S.47
Wilkinson, A.J.48
Stelling, J.49
Aymerich, S.50
Sauer, U.51
more..
-
38
-
-
55749116368
-
The origins of 168, W23, and other Bacillus subtilis legacy strains
-
Zeigler DR, Pragai Z, Rodriguez S, Chevreux B, Muffler A, Albert T, Bai R, Wyss M, Perkins JB. 2008. The origins of 168, W23, and other Bacillus subtilis legacy strains. J. Bacteriol. 190:6983-6995. http://dx.doi.org/10.1128/JB.00722-08.
-
(2008)
J. Bacteriol
, vol.190
, pp. 6983-6995
-
-
Zeigler, D.R.1
Pragai, Z.2
Rodriguez, S.3
Chevreux, B.4
Muffler, A.5
Albert, T.6
Bai, R.7
Wyss, M.8
Perkins, J.B.9
-
39
-
-
77953223755
-
pBaSysBioII: an integrative plasmid generating gfp transcriptional fusions for high-throughput analysis of gene expression in Bacillus subtilis
-
Botella E, Fogg M, Jules M, Piersma S, Doherty G, Hansen A, Denham EL, Chat LL, Veiga P, Bailey K, Lewis PJ, Dijl JM, van Aymerich S, Wilkinson AJ, Devine KM. 2010. pBaSysBioII: an integrative plasmid generating gfp transcriptional fusions for high-throughput analysis of gene expression in Bacillus subtilis. Microbiology 156:1600-1608. http://dx.doi.org/10.1099/mic.0.035758-0.
-
(2010)
Microbiology
, vol.156
, pp. 1600-1608
-
-
Botella, E.1
Fogg, M.2
Jules, M.3
Piersma, S.4
Doherty, G.5
Hansen, A.6
Denham, E.L.7
Chat, L.L.8
Veiga, P.9
Bailey, K.10
Lewis, P.J.11
Dijl, J.M.12
van Aymerich, S.13
Wilkinson, A.J.14
Devine, K.M.15
-
40
-
-
33845870439
-
Conservation of the metabolomic response to starvation across two divergent microbes
-
Brauer MJ, Yuan J, Bennett BD, Lu W, Kimball E, Botstein D, Rabinowitz JD. 2006. Conservation of the metabolomic response to starvation across two divergent microbes. Proc. Natl. Acad. Sci. U. S. A. 103:19302-19307. http://dx.doi.org/10.1073/pnas.0609508103.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A
, vol.103
, pp. 19302-19307
-
-
Brauer, M.J.1
Yuan, J.2
Bennett, B.D.3
Lu, W.4
Kimball, E.5
Botstein, D.6
Rabinowitz, J.D.7
-
41
-
-
81355127364
-
α-Ketoglutarate coordinates carbon and nitrogen utilization via enzyme I inhibition
-
Doucette CD, Schwab DJ, Wingreen NS, Rabinowitz JD. 2011. α-Ketoglutarate coordinates carbon and nitrogen utilization via enzyme I inhibition. Nat. Chem. Biol. 7:894-901. http://dx.doi.org/10.1038/nchembio.685.
-
(2011)
Nat. Chem. Biol
, vol.7
, pp. 894-901
-
-
Doucette, C.D.1
Schwab, D.J.2
Wingreen, N.S.3
Rabinowitz, J.D.4
-
42
-
-
47049089928
-
Glutamate metabolism in Bacillus subtilis: gene expression and enzyme activities evolved to avoid futile cycles and to allow rapid responses to perturbations of the system
-
Commichau FM, Gunka K, Landmann JJ, Stülke J. 2008. Glutamate metabolism in Bacillus subtilis: gene expression and enzyme activities evolved to avoid futile cycles and to allow rapid responses to perturbations of the system. J. Bacteriol. 190:3557-3564. http://dx.doi.org/10.1128/JB.00099-08.
-
(2008)
J. Bacteriol
, vol.190
, pp. 3557-3564
-
-
Commichau, F.M.1
Gunka, K.2
Landmann, J.J.3
Stülke, J.4
-
43
-
-
0024723183
-
The fermentation pathways of Escherichia coli
-
Clark DP. 1989. The fermentation pathways of Escherichia coli. FEMS Microbiol. Lett. 63:223-234. http://dx.doi.org/10.1111/j.1574-6968.1989.tb03398.x.
-
(1989)
FEMS Microbiol. Lett
, vol.63
, pp. 223-234
-
-
Clark, D.P.1
-
44
-
-
34948872723
-
A dynamic loop at the active center of the Escherichia coli pyruvate dehydrogenase complex E1 component modulates substrate utilization and chemical communication with the E2 component
-
Kale S, Arjunan P, Furey W, Jordan F. 2007. A dynamic loop at the active center of the Escherichia coli pyruvate dehydrogenase complex E1 component modulates substrate utilization and chemical communication with the E2 component. J. Biol. Chem. 282:28106-28116. http://dx.doi.org/10.1074/jbc.M704326200.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 28106-28116
-
-
Kale, S.1
Arjunan, P.2
Furey, W.3
Jordan, F.4
-
45
-
-
84861455370
-
Ultrasensitive regulation of anapleurosis via allosteric activation of PEP carboxylase
-
Xu Y-F, Amador-Noguez D, Reaves ML, Feng X-J, Rabinowitz JD.2012. Ultrasensitive regulation of anapleurosis via allosteric activation of PEP carboxylase. Nat. Chem. Biol. 8:562-568. http://dx.doi.org/10.1038/nchembio.941.
-
(2012)
Nat. Chem. Biol
, vol.8
, pp. 562-568
-
-
Xu, Y.-F.1
Amador-Noguez, D.2
Reaves, M.L.3
Feng, X.-J.4
Rabinowitz, J.D.5
-
46
-
-
0036302723
-
The glycolytic flux in Escherichia coli is controlled by the demand for ATP
-
Koebmann BJ, Westerhoff HV, Snoep JL, Nilsson D, Jensen PR. 2002. The glycolytic flux in Escherichia coli is controlled by the demand for ATP. J. Bacteriol. 184:3909-3916. http://dx.doi.org/10.1128/JB.184.14.3909-3916.2002.
-
(2002)
J. Bacteriol
, vol.184
, pp. 3909-3916
-
-
Koebmann, B.J.1
Westerhoff, H.V.2
Snoep, J.L.3
Nilsson, D.4
Jensen, P.R.5
-
47
-
-
80054069179
-
A comprehensive genome-scale reconstruction of Escherichia coli metabolism-2011
-
Orth JD, Conrad TM, Na J, Lerman JA, Nam H, Feist AM, Palsson BØ.2011. A comprehensive genome-scale reconstruction of Escherichia coli metabolism-2011. Mol. Syst. Biol. 7:535. http://dx.doi.org/10.1038/msb.2011.65.
-
(2011)
Mol. Syst. Biol
, vol.7
, pp. 535
-
-
Orth, J.D.1
Conrad, T.M.2
Na, J.3
Lerman, J.A.4
Nam, H.5
Feist, A.M.6
Palsson, BØ.7
-
48
-
-
0001238738
-
Chemical mechanism of ATP synthase: magnesium plays a pivotal role in formation of the transition state where ATP is synthesized from ADP and inorganic phosphate
-
Ko YH, Hong S, Pedersen PL. 1999. Chemical mechanism of ATP synthase: magnesium plays a pivotal role in formation of the transition state where ATP is synthesized from ADP and inorganic phosphate. J. Biol. Chem. 274:28853-28856. http://dx.doi.org/10.1074/jbc.274.41.28853.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 28853-28856
-
-
Ko, Y.H.1
Hong, S.2
Pedersen, P.L.3
-
50
-
-
0020321919
-
Evidence that Bacillus subtilis sporulation induced by the stringent response is caused by the decrease in GTP or GDP
-
Ochi K, Kandala J, Freese E. 1982. Evidence that Bacillus subtilis sporulation induced by the stringent response is caused by the decrease in GTP or GDP. J. Bacteriol. 151:1062-1065.
-
(1982)
J. Bacteriol
, vol.151
, pp. 1062-1065
-
-
Ochi, K.1
Kandala, J.2
Freese, E.3
-
51
-
-
0035336771
-
Bacillus subtilis CodY represses early-stationary-phase genes by sensing GTP levels
-
Ratnayake-Lecamwasam M, Serror P, Wong K-W, Sonenshein AL.2001. Bacillus subtilis CodY represses early-stationary-phase genes by sensing GTP levels. Genes Dev. 15:1093-1103. http://dx.doi.org/10.1101/gad.874201.
-
(2001)
Genes Dev
, vol.15
, pp. 1093-1103
-
-
Ratnayake-Lecamwasam, M.1
Serror, P.2
Wong, K.-W.3
Sonenshein, A.L.4
-
52
-
-
0033659769
-
Control of sporulation initiation in Bacillus subtilis
-
Sonenshein AL. 2000. Control of sporulation initiation in Bacillus subtilis. Curr. Opin. Microbiol. 3:561-566. http://dx.doi.org/10.1016/S1369-5274 (00)00141-7.
-
(2000)
Curr. Opin. Microbiol
, vol.3
, pp. 561-566
-
-
Sonenshein, A.L.1
-
53
-
-
0032518333
-
Bacterial sporulation: a question of commitment?
-
Stephens C. 1998. Bacterial sporulation: a question of commitment? Curr. Biol. 8:R45-R48. http://dx.doi.org/10.1016/S0960-9822(98)70031-4.
-
(1998)
Curr. Biol
, vol.8
-
-
Stephens, C.1
-
54
-
-
0028468549
-
Bacterial sporulation: an ATP/ADP switch
-
Stephens C, Singer M, Shapiro L. 1994. Bacterial sporulation: an ATP/ADP switch. Curr. Biol. 4:630-632. http://dx.doi.org/10.1016/S0960-9822(00)00139-1.
-
(1994)
Curr. Biol
, vol.4
, pp. 630-632
-
-
Stephens, C.1
Singer, M.2
Shapiro, L.3
-
55
-
-
84876931237
-
Respiration control of multicellularity in Bacillus subtilis by a complex of the cytochrome chain with a membrane-embedded histidine kinase
-
Kolodkin-Gal I, Elsholz AKW, Muth C, Girguis PR, Kolter R, Losick R.2013. Respiration control of multicellularity in Bacillus subtilis by a complex of the cytochrome chain with a membrane-embedded histidine kinase. Genes Dev. 27:887-899. http://dx.doi.org/10.1101/gad.215244.113.
-
(2013)
Genes Dev
, vol.27
, pp. 887-899
-
-
Kolodkin-Gal, I.1
Elsholz, A.K.W.2
Muth, C.3
Girguis, P.R.4
Kolter, R.5
Losick, R.6
-
56
-
-
77955302838
-
The threshold level of the sensor histidine kinase KinA governs entry into sporulation in Bacillus subtilis
-
Eswaramoorthy P, Duan D, Dinh J, Dravis A, Devi SN, Fujita M. 2010. The threshold level of the sensor histidine kinase KinA governs entry into sporulation in Bacillus subtilis. J. Bacteriol. 192:3870-3882. http://dx.doi.org/10.1128/JB.00466-10.
-
(2010)
J. Bacteriol
, vol.192
, pp. 3870-3882
-
-
Eswaramoorthy, P.1
Duan, D.2
Dinh, J.3
Dravis, A.4
Devi, S.N.5
Fujita, M.6
-
57
-
-
84876078712
-
Expression of kinA and kinB of Bacillus subtilis, necessary for sporulation initiation, is under positive stringent transcription control
-
Tojo S, Hirooka K, Fujita Y. 2013. Expression of kinA and kinB of Bacillus subtilis, necessary for sporulation initiation, is under positive stringent transcription control. J. Bacteriol. 195:1656-1665. http://dx.doi.org/10.1128/JB.02131-12.
-
(2013)
J. Bacteriol
, vol.195
, pp. 1656-1665
-
-
Tojo, S.1
Hirooka, K.2
Fujita, Y.3
|