Relative Abundance in Bacterial and Fungal Gut Microbes in Obese Children: A Case Control Study

Childhood Obesity

Volumn 13, Issue 1, 2017, Pages 78-84

  Borgo, Francesca ^a   Verduci, Elvira ^b   Riva, Alessandra ^a   Lassandro, Carlotta ^a   Riva, Enrica ^b   Morace, Giulia ^a   Borghi, Elisa ^a  

^a UNIVERSITY OF MILAN   (Italy)

^b SAN PAOLO HOSPITAL   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

BACTERIUM; BODY MASS; CASE CONTROL STUDY; CHILD; CLASSIFICATION; FECES; FEEDING BEHAVIOR; FUNGUS; GASTROINTESTINAL TRACT; HUMAN; INTESTINE FLORA; ISOLATION AND PURIFICATION; MICROBIOLOGY; PEDIATRIC OBESITY; PHYSIOLOGY; REAL TIME POLYMERASE CHAIN REACTION;

BACTERIA; BODY MASS INDEX; CASE-CONTROL STUDIES; CHILD; FECES; FEEDING BEHAVIOR; FUNGI; GASTROINTESTINAL MICROBIOME; GASTROINTESTINAL TRACT; HUMANS; PEDIATRIC OBESITY; REAL-TIME POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S;

EID: 85010285123     PISSN: 21532168     EISSN: 21532176     Source Type: Journal    
DOI: 10.1089/chi.2015.0194     Document Type: Article

References (38)

1. Khan I, Yasir M, Azhar EI, et al. Implication of gut microbiota in human health. CNSNeurolDisordDrug Targets 2014;13:1325-1333.
2. Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature 2012;486: 207-214.
3. O'Hara AM, Shanahan F. The gut flora as a forgotten organ. EMBO Reports 2006;7:688-693.
4. Turnbaugh PJ, Ley RE, Hamady M, et al. The human microbiome project. Nature 2007;449:804-810.
5. Wang ZK, Yang YS, Stefka AT, et al. Review article: Fungal microbiota and digestive diseases. Aliment Pharmacol Ther 2014; 39:751-766.
6. Huffnagle GB, Noverr MC. The emerging world of the fungal microbiome. Trends Microbiol 2013;21:334-341.
7. Ley RE, Turnbaugh PJ, Klein S, et al. Microbial ecology: Human gut microbes associated with obesity. Nature 2006;444:1022-1023.
8. Turnbaugh PJ, Hamady M, Yatsunenko T, et al. A core gut microbiome in obese and lean twins. Nature 2009;457:480-484.
9. Mueller S, Saunier K, Hanisch, C, et al. Differences in fecal microbiota in different European study populations in relation to age, gender, and country: A cross-sectional study. Appl Environ Microbiol 2006;72:1027-1033.
10. Schwiertz A, Taras D, Schäfer K, et al. Microbiota and SCFA in lean and overweight healthy subjects. Obesity 2010;18:190-195.
11. Karlsson CLJ, Onnerfält J, Xu J, et al. The microbiota of the gut in preschool children with normal and excessive body weight. Obesity 2012; 20:2257-2261.
12. World Health Organization (WHO). www. who. int/childgrowth/ software/en/ (Last accessed March 16, 2016.)
13. World Health Organization (WHO). www. who. int/growthref/tools/ en/ (Last accessed March 16, 2016.)
14. World Health Organization (WHO). www. who. int/growthref/ who2007-bmi-for-age/en/ (Last accessed March 16, 2016.)
15. Keskin M, Kurtoglu S, Kendirci M, et al. Homeostasis model assessment is more reliable than the fasting glucose/insulin ratio and quantitative insulin sensitivity check index for assessing insulin resistance among obese children and adolescents. Pediatrics 2005;115:e500-e503.
16. Verduci E, Radaelli G, Stival G, et al. Dietary macronutrient intake during the first 10 years of life in a cohort of Italian children. J Pediatr Gastroenterol Nutr 2007;45:90-95.
17. Delroisse JM, Bolvin AL, Parmentier I, et al. Quantification of Bifidobacterium spp. and Lactobacillus spp. in rat fecal samples by real-time PCR. Microbiol Res 2008;163:663-670.
18. Nisiotou AA, Spiropoulos AE, Nychas GJ. Yeast community structures and dynamics in healthy and Botrytis-affected grape must fermentations. Appl Environ Microbiol 2007;73:6705-6713.
19. Bartosch S, Fite A, Macfarlane GT, et al. Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using Real-Time PCR and effects of antibiotic treatment on the fecal microbiota. Appl Environ Microbiol 2004;6:3575-3581.
20. Collado MC, Derrien M, Isolauri E, et al. Intestinal integrity and Akkermansia muciniphila, a mucin-degrading member of the intestinal microbiota present in infants, adults, and the elderly. Appl Environ Microbiol 2007;73:7767-7770.
21. Hierro N, Esteve-Zarzoso B, González A, et al. Real-time quantitative PCR (QPCR) and reverse transcription-QPCR for detection and enumeration of total yeasts in wine. Appl Environ Microbiol 2006;72:7148-7155.
22. Zott K, Claisse O, Lucas P, et al. Characterization of the yeast ecosystem in grape must and wine using real-time PCR. Food Microbiol 2010;27:559-567.
23. Mujico JR, Baccan GC, Gheorghe A, et al. Changes in gut microbiota due to supplemented fatty acids in diet-induced obese mice. Br J Nutr 2013;110:711-720.
24. Tabbaa M, Golubic M, Roizen MF, et al. Docosahexaenoic acid, inflammation, and bacterial dysbiosis in relation to periodontal disease, inflammatory bowel disease, and the metabolic syndrome. Nutrients 2013;5:3299-3331.
25. Schloss PD, Iverson KD, Petrosino JF, et al. The dynamics of a family's gut microbiota reveal variations on a theme. Microbiome 2014;2:25-38.
26. Everard A, Belzer C, Geurts L, et al. Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity. Proc Natl Acad Sci USA 2013;110:9066-9071.
27. Derrien M, van Passel MW, van de Bovenkamp JH et al. Mucinbacterial interactions in the human oral cavity and digestive tract. Gut Microbes 2010;1:254-268.
28. Fujimoto T, Imaeda H, Takahashi K, et al. Decreased abundance of Faecalibacterium prausnitzii in the gut microbiota of Crohn's disease. J Gastroen Hepatol 2013;28:613-619.
29. Sokol H, Pigneur B, Watterlot L, et al. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci USA 2008;105:16731-16736.
30. Wrzosek L, Miquel S, Noordine ML, et al. Bacteroides thetaiotaomicron and Faecalibacterium prausnitzii influence the production of mucus glycans and the development of goblet cells in the colonic epithelium of a gnotobiotic model rodent. BMCBiol 2013;11:61-74.
31. Xu P, Li M, Zhang J, et al. Correlation of intestinal microbiota with overweight and obesity in Kazakh school children. BMC Microbiol 2012;12:283-289.
32. Hoffmann C, Dollive S, Grunberg S, et al. Archea and fungi of the human gut microbiome: Correlations with diet and bacterial resident. Plos One 2013;8:e66019.
33. Mathur R, Kim G, Morales W, et al. Intestinal Methanobrevibacter smithii but not total bacteria is related to diet-induced weight gain in rats. Obesity 2013;21:748-754.
34. Samuel BS, Gordon JI. A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism. Proc Natl Acad Sci USA 2006;103:10011-10016.
35. Schwiertz A, Taras D, Schafer K, et al. Microbiota and SCFA in lean and overweight healthy subjects. Obesity 2010;18:190-195.
36. Million M, Angelakis E, Maraninchi M, et al. Correlation between body mass index and gut concentrations of Lactobacillus reuteri, Bifidobacterium animalis, Methanobrevibacter smithii and Escherichia coli. Int J Obes 2013;37:1460-1466.
37. ZhangH, DiBaise JK, Zuccolo A, et al. Human gut microbiota in obesity and after gastric bypass. Proc Natl Acad Sci USA 2009;106:2365-2370.
38. Mbakwa CA, Penders J, Savelkoul PH, et al. Gut colonization with methanobrevibacter smithii is associated with childhood weight development. Obesity 2015;23:2508-2516.