-
1
-
-
35348968286
-
The human microbiome project
-
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, et al. 2007. The human microbiome project. Nature 449: 804–10.
-
(2007)
Nature
, vol.449
, pp. 804-810
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Hamady, M.3
Fraser-Liggett, C.M.4
-
2
-
-
77958512003
-
Host-bacterial symbiosis in health and disease
-
Chow J, Lee SM, Shen Y, Khosravi A, et al. 2010. Host-bacterial symbiosis in health and disease. Adv Immunol 107: 243–74.
-
(2010)
Adv Immunol
, vol.107
, pp. 243-274
-
-
Chow, J.1
Lee, S.M.2
Shen, Y.3
Khosravi, A.4
-
3
-
-
79959201412
-
Human nutrition, the gut microbiome and the immune system
-
Kau AL, Ahern PP, Griffin NW, Goodman AL, et al. 2011. Human nutrition, the gut microbiome and the immune system. Nature 474: 327–36.
-
(2011)
Nature
, vol.474
, pp. 327-336
-
-
Kau, A.L.1
Ahern, P.P.2
Griffin, N.W.3
Goodman, A.L.4
-
4
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J, Li R, Raes J, Arumugam M, et al. 2010. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59–65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
-
5
-
-
84858376593
-
The impact of the gut microbiota on human health: an integrative view
-
Clemente JC, Ursell LK, Parfrey LW, Knight R. 2012. The impact of the gut microbiota on human health: an integrative view. Cell 148: 1258–70.
-
(2012)
Cell
, vol.148
, pp. 1258-1270
-
-
Clemente, J.C.1
Ursell, L.K.2
Parfrey, L.W.3
Knight, R.4
-
7
-
-
84869188027
-
Defining a healthy human gut microbiome: current concepts, future directions, and clinical applications
-
Backhed F, Fraser CM, Ringel Y, Sanders ME, et al. 2012. Defining a healthy human gut microbiome: current concepts, future directions, and clinical applications. Cell Host Microbe 12: 611–22.
-
(2012)
Cell Host Microbe
, vol.12
, pp. 611-622
-
-
Backhed, F.1
Fraser, C.M.2
Ringel, Y.3
Sanders, M.E.4
-
8
-
-
77957075815
-
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
-
De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, et al. 2010. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci USA 107: 14691–6.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 14691-14696
-
-
De Filippo, C.1
Cavalieri, D.2
Di Paola, M.3
Ramazzotti, M.4
-
9
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
Yatsunenko T, Rey FE, Manary MJ, Trehan I, et al. 2012. Human gut microbiome viewed across age and geography. Nature 486: 222–7.
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
-
10
-
-
84872825519
-
Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States
-
Lin A, Bik EM, Costello EK, Dethlefsen L, et al. 2013. Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States. PLoS ONE 8: e583838.
-
(2013)
PLoS ONE
, vol.8
-
-
Lin, A.1
Bik, E.M.2
Costello, E.K.3
Dethlefsen, L.4
-
11
-
-
84923080032
-
Gut microbiome of the Hadza hunter-gatherers
-
Schnorr SL, Candela M, Rampelli S, Centanni M, et al. 2014. Gut microbiome of the Hadza hunter-gatherers. Nat Commun 5: 3654.
-
(2014)
Nat Commun
, vol.5
, pp. 3654
-
-
Schnorr, S.L.1
Candela, M.2
Rampelli, S.3
Centanni, M.4
-
12
-
-
84937519881
-
Metagenome sequencing of the Hadza hunter-gatherer gut microbiota
-
Rampelli S, Schnorr SL, Consolandi C, Turroni S, et al. 2015. Metagenome sequencing of the Hadza hunter-gatherer gut microbiota. Curr Biol 25: 1682–93.
-
(2015)
Curr Biol
, vol.25
, pp. 1682-1693
-
-
Rampelli, S.1
Schnorr, S.L.2
Consolandi, C.3
Turroni, S.4
-
13
-
-
84901056709
-
Mongolians core gut microbiota and its correlation with seasonal dietary changes
-
Zhang J, Guo Z, Lim AA, Zheng Y, et al. 2014. Mongolians core gut microbiota and its correlation with seasonal dietary changes. Sci Rep 4: 5001.
-
(2014)
Sci Rep
, vol.4
, pp. 5001
-
-
Zhang, J.1
Guo, Z.2
Lim, A.A.3
Zheng, Y.4
-
14
-
-
84925708427
-
Subsistence strategies in traditional societies distinguish gut microbiomes
-
Obregon-Tito AJ, Tito RY, Metcalf J, Sankaranarayanan K, et al. 2015. Subsistence strategies in traditional societies distinguish gut microbiomes. Nat Commun 6: 6505.
-
(2015)
Nat Commun
, vol.6
, pp. 6505
-
-
Obregon-Tito, A.J.1
Tito, R.Y.2
Metcalf, J.3
Sankaranarayanan, K.4
-
16
-
-
84928587108
-
The gut microbiota of rural papua new guineans: composition, diversity patterns, and ecological processes
-
Martinez I, Stegen JC, Maldonado-Gomez MX, Eren AM, et al. 2015. The gut microbiota of rural papua new guineans: composition, diversity patterns, and ecological processes. Cell Rep 11: 527–38.
-
(2015)
Cell Rep
, vol.11
, pp. 527-538
-
-
Martinez, I.1
Stegen, J.C.2
Maldonado-Gomez, M.X.3
Eren, A.M.4
-
17
-
-
84949256787
-
Variation in rural African gut microbiota is strongly correlated with colonization by entamoeba and subsistence
-
Morton ER, Lynch J, Froment A, Lafosse S, et al. 2015. Variation in rural African gut microbiota is strongly correlated with colonization by entamoeba and subsistence. PLoS Genet 11: e1005658.
-
(2015)
PLoS Genet
, vol.11
-
-
Morton, E.R.1
Lynch, J.2
Froment, A.3
Lafosse, S.4
-
18
-
-
84960468261
-
Gut microbiome of coexisting BaAka pygmies and bantu reflects gradients of traditional subsistence patterns
-
Gomez A, Petrzelkova KJ, Burns MB, Yeoman CJ, et al. 2016. Gut microbiome of coexisting BaAka pygmies and bantu reflects gradients of traditional subsistence patterns. Cell Rep 14: 2142–53.
-
(2016)
Cell Rep
, vol.14
, pp. 2142-2153
-
-
Gomez, A.1
Petrzelkova, K.J.2
Burns, M.B.3
Yeoman, C.J.4
-
19
-
-
84978147656
-
Mobile genes in the human microbiome are structured from global to individual scales
-
Brito IL, Yilmaz S, Huang K, Xu L, et al. 2016. Mobile genes in the human microbiome are structured from global to individual scales. Nature 535: 435–9.
-
(2016)
Nature
, vol.535
, pp. 435-439
-
-
Brito, I.L.1
Yilmaz, S.2
Huang, K.3
Xu, L.4
-
20
-
-
85013721774
-
Nonparametric estimation of the number of classes in a population
-
Chao A. 1984. Nonparametric estimation of the number of classes in a population. Scand J Stat 11: 265–70.
-
(1984)
Scand J Stat
, vol.11
, pp. 265-270
-
-
Chao, A.1
-
21
-
-
84940644968
-
A mathematical theory of communication
-
Shannon CE. 1948. A mathematical theory of communication. Bell System Tech J 27: 379–423.
-
(1948)
Bell System Tech J
, vol.27
, pp. 379-423
-
-
Shannon, C.E.1
-
22
-
-
33344464667
-
Measurement of diversity
-
Simpson EH. 1949. Measurement of diversity. Nature 163: 688.
-
(1949)
Nature
, vol.163
, pp. 688
-
-
Simpson, E.H.1
-
23
-
-
0026499429
-
Conservation evaluation and phylogenetic diversity
-
Faith PF. 1992. Conservation evaluation and phylogenetic diversity. Biol Conserv 61: 1–10.
-
(1992)
Biol Conserv
, vol.61
, pp. 1-10
-
-
Faith, P.F.1
-
24
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, et al. 2009. A core gut microbiome in obese and lean twins. Nature 457: 480–4.
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
-
25
-
-
84858604441
-
Structural alterations of faecal and mucosa-associated bacterial communities in irritable bowel syndrome
-
Durban A, Abellan JJ, Jimenez-Hernandez N, Salgado P, et al. 2012. Structural alterations of faecal and mucosa-associated bacterial communities in irritable bowel syndrome. Environ Microbiol Rep 4: 242–7.
-
(2012)
Environ Microbiol Rep
, vol.4
, pp. 242-247
-
-
Durban, A.1
Abellan, J.J.2
Jimenez-Hernandez, N.3
Salgado, P.4
-
26
-
-
84896728998
-
A modular organization of the human intestinal mucosal microbiota and its association with inflammatory bowel disease
-
Tong M, Li X, Wegener Parfrey L, Roth B, et al. 2013. A modular organization of the human intestinal mucosal microbiota and its association with inflammatory bowel disease. PLoS ONE 8: e80702.
-
(2013)
PLoS ONE
, vol.8
-
-
Tong, M.1
Li, X.2
Wegener Parfrey, L.3
Roth, B.4
-
27
-
-
84879760435
-
Reduced incidence of Prevotella and other fermenters in intestinal microflora of autistic children
-
Kang DW, Park JG, Ilhan ZE, Wallstrom G, et al. 2013. Reduced incidence of Prevotella and other fermenters in intestinal microflora of autistic children. PLoS ONE 8: e68322.
-
(2013)
PLoS ONE
, vol.8
-
-
Kang, D.W.1
Park, J.G.2
Ilhan, Z.E.3
Wallstrom, G.4
-
28
-
-
84959553385
-
Composition of human faecal microbiota in resistance to Campylobacter infection
-
Kampmann C, Dicksved J, Engstrand L, Rautelin H. 2016. Composition of human faecal microbiota in resistance to Campylobacter infection. Clin Microbiol Infect 22: 61.e1–8.
-
(2016)
Clin Microbiol Infect
, vol.22
, pp. 61.e1-8
-
-
Kampmann, C.1
Dicksved, J.2
Engstrand, L.3
Rautelin, H.4
-
29
-
-
84964374640
-
Gut microbiota diversity and human diseases: should we reintroduce key predators in our ecosystem
-
Mosca A, Leclerc M, Hugot JP. 2016. Gut microbiota diversity and human diseases: should we reintroduce key predators in our ecosystem? Front Microbiol 7: 455.
-
(2016)
Front Microbiol
, vol.7
, pp. 455
-
-
Mosca, A.1
Leclerc, M.2
Hugot, J.P.3
-
30
-
-
70449703996
-
What are the consequences of the disappearing human microbiota
-
Blaser MJ, Falkow S. 2009. What are the consequences of the disappearing human microbiota? Nat Rev Microbiol 7: 887–94.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 887-894
-
-
Blaser, M.J.1
Falkow, S.2
-
31
-
-
84937424152
-
Gut microbiome: westernization and the disappearance of intestinal diversity
-
Segata N. 2015. Gut microbiome: westernization and the disappearance of intestinal diversity. Curr Biol 25: R611–3.
-
(2015)
Curr Biol
, vol.25
, pp. R611-R613
-
-
Segata, N.1
-
32
-
-
84962812257
-
The fiber gap and the disappearing gut microbiome: implications for human nutrition
-
Deehan EC, Walter J. 2016. The fiber gap and the disappearing gut microbiome: implications for human nutrition. Trends Endocrinol Metab 27: 239–42.
-
(2016)
Trends Endocrinol Metab
, vol.27
, pp. 239-242
-
-
Deehan, E.C.1
Walter, J.2
-
33
-
-
1542438057
-
On the generality of the latitudinal diversity gradient
-
Hillebrand H. 2004. On the generality of the latitudinal diversity gradient. Am Nat 163: 192–211.
-
(2004)
Am Nat
, vol.163
, pp. 192-211
-
-
Hillebrand, H.1
-
34
-
-
33947288482
-
Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography
-
Mittelbach GG, Schemske DW, Cornell HV, Allen AP, et al. 2007. Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography. Ecol Lett 10: 315–31.
-
(2007)
Ecol Lett
, vol.10
, pp. 315-331
-
-
Mittelbach, G.G.1
Schemske, D.W.2
Cornell, H.V.3
Allen, A.P.4
-
35
-
-
33846914243
-
Global patterns of diversity and community structure in marine bacterioplankton
-
Pommier T, Canback B, Riemann L, Bostrom KH, et al. 2007. Global patterns of diversity and community structure in marine bacterioplankton. Mol Ecol 16: 867–80.
-
(2007)
Mol Ecol
, vol.16
, pp. 867-880
-
-
Pommier, T.1
Canback, B.2
Riemann, L.3
Bostrom, K.H.4
-
36
-
-
45549109457
-
A latitudinal diversity gradient in planktonic marine bacteria
-
Fuhrman JA, Steele JA, Hewson I, Schwalbach MS, et al. 2008. A latitudinal diversity gradient in planktonic marine bacteria. Proc Natl Acad Sci USA 105: 7774–8.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 7774-7778
-
-
Fuhrman, J.A.1
Steele, J.A.2
Hewson, I.3
Schwalbach, M.S.4
-
37
-
-
19344374744
-
Ecology drives the worldwide distribution of human diseases
-
Guernier V, Hochberg ME, Guegan JF. 2004. Ecology drives the worldwide distribution of human diseases. PLoS Biol 2: e141.
-
(2004)
PLoS Biol
, vol.2
-
-
Guernier, V.1
Hochberg, M.E.2
Guegan, J.F.3
-
38
-
-
51049108796
-
Postnatal development of intestinal microflora as influenced by infant nutrition
-
Morelli L. 2008. Postnatal development of intestinal microflora as influenced by infant nutrition. J Nutr 138: 1791S–5S.
-
(2008)
J Nutr
, vol.138
, pp. 1791S-1795S
-
-
Morelli, L.1
-
39
-
-
84923372539
-
Diversity in gut bacterial community of school-age children in Asia
-
Nakayama J, Watanabe K, Jiang J, Matsuda K, et al. 2015. Diversity in gut bacterial community of school-age children in Asia. Sci Rep 5: 8397.
-
(2015)
Sci Rep
, vol.5
, pp. 8397
-
-
Nakayama, J.1
Watanabe, K.2
Jiang, J.3
Matsuda, K.4
-
40
-
-
84947460747
-
Sample storage conditions significantly influence faecal microbiome profiles
-
Choo JM, Leong LE, Rogers GB. 2015. Sample storage conditions significantly influence faecal microbiome profiles. Sci Rep 5: 16350.
-
(2015)
Sci Rep
, vol.5
, pp. 16350
-
-
Choo, J.M.1
Leong, L.E.2
Rogers, G.B.3
-
41
-
-
84904569753
-
Conducting a microbiome study
-
Goodrich JK, Di Rienzi SC, Poole AC, Koren O, et al. 2014. Conducting a microbiome study. Cell 158: 250–62.
-
(2014)
Cell
, vol.158
, pp. 250-262
-
-
Goodrich, J.K.1
Di Rienzi, S.C.2
Poole, A.C.3
Koren, O.4
-
42
-
-
84924137629
-
Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa
-
Li J, Quinque D, Horz HP, Li M, et al. 2014. Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa. BMC Microbiol 14: 316.
-
(2014)
BMC Microbiol
, vol.14
, pp. 316
-
-
Li, J.1
Quinque, D.2
Horz, H.P.3
Li, M.4
-
43
-
-
84871367444
-
Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents
-
Blaser MJ, Dominguez-Bello MG, Contreras M, Magris M, et al. 2013. Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents. ISME J 7: 85–95.
-
(2013)
ISME J
, vol.7
, pp. 85-95
-
-
Blaser, M.J.1
Dominguez-Bello, M.G.2
Contreras, M.3
Magris, M.4
-
44
-
-
84964636322
-
Body site is a more determinant factor than human population diversity in the healthy skin microbiome
-
Perez Perez GI, Gao Z, Jourdain R, Ramirez J, et al. 2016. Body site is a more determinant factor than human population diversity in the healthy skin microbiome. PLoS ONE 11: e0151990.
-
(2016)
PLoS ONE
, vol.11
-
-
Perez Perez, G.I.1
Gao, Z.2
Jourdain, R.3
Ramirez, J.4
-
45
-
-
84908078004
-
Differences in vaginal microbiome in African American women versus women of European ancestry
-
Fettweis JM, Brooks JP, Serrano MG, Sheth NU, et al. 2014. Differences in vaginal microbiome in African American women versus women of European ancestry. Microbiology 160: 2272–82.
-
(2014)
Microbiology
, vol.160
, pp. 2272-2282
-
-
Fettweis, J.M.1
Brooks, J.P.2
Serrano, M.G.3
Sheth, N.U.4
-
46
-
-
79551495183
-
Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma
-
e1–3
-
Huang YJ, Nelson CE, Brodie EL, Desantis TZ, et al. 2011. Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma. J Allergy Clin Immunol 127: 372–81 e1–3.
-
(2011)
J Allergy Clin Immunol
, vol.127
, pp. 372-381
-
-
Huang, Y.J.1
Nelson, C.E.2
Brodie, E.L.3
Desantis, T.Z.4
-
47
-
-
84883855720
-
Alterations in the gut microbiota associated with HIV-1 infection
-
Lozupone CA, Li M, Campbell TB, Flores SC, et al. 2013. Alterations in the gut microbiota associated with HIV-1 infection. Cell Host Microbe 14: 329–39.
-
(2013)
Cell Host Microbe
, vol.14
, pp. 329-339
-
-
Lozupone, C.A.1
Li, M.2
Campbell, T.B.3
Flores, S.C.4
-
48
-
-
84966455374
-
Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota
-
Blastocystis Investigation Group
-
Audebert C, Even G, Cian A, Blastocystis Investigation Group, et al. 2016. Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota. Sci Rep 6: 25255.
-
(2016)
Sci Rep
, vol.6
, pp. 25255
-
-
Audebert, C.1
Even, G.2
Cian, A.3
-
49
-
-
84956661593
-
Incorporating the gut microbiota into models of human and non-human primate ecology and evolution
-
Amato KR. 2016. Incorporating the gut microbiota into models of human and non-human primate ecology and evolution. Am J Physical Anthropol 159: S196–215.
-
(2016)
Am J Physical Anthropol
, vol.159
, pp. S196-215
-
-
Amato, K.R.1
|