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Volumn 14, Issue 1, 2014, Pages

Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa

Author keywords

Humans; Microbial community; Saliva

Indexed keywords

RNA 16S; BACTERIAL DNA; RIBOSOME DNA;

EID: 84924137629     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/s12866-014-0316-1     Document Type: Article
Times cited : (133)

References (55)
  • 3
    • 84856011484 scopus 로고    scopus 로고
    • Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
    • Greenblum S, Turnbaugh PJ, Borenstein E: Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease. Proc Natl Acad Sci U S A 2012, 109(2):594-599.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , Issue.2 , pp. 594-599
    • Greenblum, S.1    Turnbaugh, P.J.2    Borenstein, E.3
  • 4
    • 74249119678 scopus 로고    scopus 로고
    • Obesity and the human microbiome
    • Ley RE: Obesity and the human microbiome. Curr Opin Gastroenterol 2010, 26(1):5-11.
    • (2010) Curr Opin Gastroenterol , vol.26 , Issue.1 , pp. 5-11
    • Ley, R.E.1
  • 7
    • 72949091232 scopus 로고    scopus 로고
    • Bacterial community variation in human body habitats across space and time
    • Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R: Bacterial Community Variation in Human Body Habitats Across Space and Time. Science 2009, 326(5960):1694-1697.
    • (2009) Science , vol.326 , Issue.5960 , pp. 1694-1697
    • Costello, E.K.1    Lauber, C.L.2    Hamady, M.3    Fierer, N.4    Gordon, J.I.5    Knight, R.6
  • 10
    • 79958188667 scopus 로고    scopus 로고
    • Oral microbiota and cancer
    • Meurman JH: Oral microbiota and cancer. J Oral Microbiol 2010, 2:5195-5205.
    • (2010) J Oral Microbiol , vol.2 , pp. 5195-5205
    • Meurman, J.H.1
  • 12
    • 28644432523 scopus 로고    scopus 로고
    • Systemic effects of periodontitis: Epidemiology of periodontal disease and cardiovascular disease
    • Beck JD, Offenbacher S: Systemic effects of periodontitis: epidemiology of periodontal disease and cardiovascular disease. J Periodontol 2005, 76(11 Suppl):2089-2100.
    • (2005) J Periodontol , vol.76 , Issue.11 , pp. 2089-2100
    • Beck, J.D.1    Offenbacher, S.2
  • 13
    • 0037226509 scopus 로고    scopus 로고
    • Periodontal disease, tooth loss, and incidence of ischemic stroke
    • Joshipura KJ, Hung HC, Rimm EB, Willett WC, Ascherio A: Periodontal disease, tooth loss, and incidence of ischemic stroke. Stroke 2003, 34(1):47-52.
    • (2003) Stroke , vol.34 , Issue.1 , pp. 47-52
    • Joshipura, K.J.1    Hung, H.C.2    Rimm, E.B.3    Willett, W.C.4    Ascherio, A.5
  • 17
    • 0034566863 scopus 로고    scopus 로고
    • The common risk factor approach: A rational basis for promoting oral health
    • Sheiham A, Watt RG: The common risk factor approach: A rational basis for promoting oral health. Community Dent Oral Epidemiol 2000, 28(6):399-406.
    • (2000) Community Dent Oral Epidemiol , vol.28 , Issue.6 , pp. 399-406
    • Sheiham, A.1    Watt, R.G.2
  • 18
    • 0036561492 scopus 로고    scopus 로고
    • Salivary microbiota levels in relation to periodontal status, experience of caries and miswak use in Sudanese adults (vol 29, pg 411, 2002)
    • Darout IA, Albandar JM, Skaug N, Ali RW: Salivary microbiota levels in relation to periodontal status, experience of caries and miswak use in Sudanese adults (vol 29, pg 411, 2002). J Clin Periodontol 2002, 29(10):964.
    • (2002) J Clin Periodontol , vol.29 , Issue.10 , pp. 964
    • Darout, I.A.1    Albandar, J.M.2    Skaug, N.3    Ali, R.W.4
  • 19
    • 79952201936 scopus 로고    scopus 로고
    • Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health
    • Crielaard W, Zaura E, Schuller AA, Huse SM, Montijn RC, Keijser BJF: Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health. Bmc Med Genomics 2011, 4:22-43.
    • (2011) Bmc Med Genomics , vol.4 , pp. 22-43
    • Crielaard, W.1    Zaura, E.2    Schuller, A.A.3    Huse, S.M.4    Montijn, R.C.5    Keijser, B.J.F.6
  • 21
    • 63849171250 scopus 로고    scopus 로고
    • Global diversity in the human salivary microbiome
    • Nasidze I, Li J, Quinque D, Tang K, Stoneking M: Global diversity in the human salivary microbiome. Genome Res 2009, 19(4):636-643.
    • (2009) Genome Res , vol.19 , Issue.4 , pp. 636-643
    • Nasidze, I.1    Li, J.2    Quinque, D.3    Tang, K.4    Stoneking, M.5
  • 24
    • 84886019355 scopus 로고    scopus 로고
    • Deep sequencing identifies ethnicity-specific bacterial signatures in the oral microbiome
    • Mason MR, Nagaraja HN, Camerlengo T, Joshi V, Kumar PS: Deep sequencing identifies ethnicity-specific bacterial signatures in the oral microbiome. PLoS One 2013, 8(10):e77287.
    • (2013) PLoS One , vol.8 , Issue.10 , pp. e77287
    • Mason, M.R.1    Nagaraja, H.N.2    Camerlengo, T.3    Joshi, V.4    Kumar, P.S.5
  • 26
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR: Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 2007, 73(16):5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , Issue.16 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 29
    • 84862173705 scopus 로고    scopus 로고
    • A core human microbiome as viewed through 16S rRNA sequence clusters
    • Huse SM, Ye YZ, Zhou YJ, Fodor AA: A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters. PLoS One 2012, 7(6):e34242.
    • (2012) PLoS One , vol.7 , Issue.6 , pp. e34242
    • Huse, S.M.1    Ye, Y.Z.2    Zhou, Y.J.3    Fodor, A.A.4
  • 30
    • 84877091328 scopus 로고    scopus 로고
    • Analyses of the stability and core taxonomic memberships of the human microbiome
    • Li K, Bihan M, Methe BA: Analyses of the Stability and Core Taxonomic Memberships of the Human Microbiome. PLoS One 2013, 8(5):e63139.
    • (2013) PLoS One , vol.8 , Issue.5 , pp. e63139
    • Li, K.1    Bihan, M.2    Methe, B.A.3
  • 31
    • 0028431621 scopus 로고
    • Bacteria as risk markers for periodontitis
    • Wolff L, Dahlen G, Aeppli D: Bacteria as Risk Markers for Periodontitis. J Periodontol 1994, 65(5):498-510.
    • (1994) J Periodontol , vol.65 , Issue.5 , pp. 498-510
    • Wolff, L.1    Dahlen, G.2    Aeppli, D.3
  • 32
    • 0028279868 scopus 로고
    • Carbohydrates and dental health
    • Navia JM: Carbohydrates and dental health. Am J Clin Nutr 1994, 59(3 Suppl):719S-727S.
    • (1994) Am J Clin Nutr , vol.59 , Issue.3 , pp. 719S-727S
    • Navia, J.M.1
  • 34
    • 77953993754 scopus 로고    scopus 로고
    • Central role of the early colonizer veillonella sp in establishing multispecies biofilm communities with initial, middle, and late colonizers of enamel
    • Periasamy S, Kolenbrander PE: Central Role of the Early Colonizer Veillonella sp in Establishing Multispecies Biofilm Communities with Initial, Middle, and Late Colonizers of Enamel. J Bacteriol 2010, 192(12):2965-2972.
    • (2010) J Bacteriol , vol.192 , Issue.12 , pp. 2965-2972
    • Periasamy, S.1    Kolenbrander, P.E.2
  • 37
    • 84855294263 scopus 로고    scopus 로고
    • Beyond the Venn diagram: The hunt for a core microbiome
    • Shade A, Handelsman J: Beyond the Venn diagram: The hunt for a core microbiome. Environ Microbiol 2012, 14(1):4-12.
    • (2012) Environ Microbiol , vol.14 , Issue.1 , pp. 4-12
    • Shade, A.1    Handelsman, J.2
  • 38
    • 33646111008 scopus 로고    scopus 로고
    • Effects of preculturing conditions on lag time and specific growth rate of Enterobacter sakazakii in reconstituted powdered infant formula
    • Kandhai MC, Reij MW, Grognou C, van Schothorst M, Gorris LGM, Zwietering MH: Effects of preculturing conditions on lag time and specific growth rate of Enterobacter sakazakii in reconstituted powdered infant formula. Appl Environ Microb 2006, 72(4):2721-2729.
    • (2006) Appl Environ Microb , vol.72 , Issue.4 , pp. 2721-2729
    • Kandhai, M.C.1    Reij, M.W.2    Grognou, C.3    Van Schothorst, M.4    Gorris, L.G.M.5    Zwietering, M.H.6
  • 39
    • 0020534991 scopus 로고
    • Model for bacterial culture-growth rate throughout the entire biokinetic temperature-range
    • Ratkowsky DA, Lowry RK, Mcmeekin TA, Stokes AN, Chandler RE: Model for Bacterial Culture-Growth Rate Throughout the Entire Biokinetic Temperature-Range. J Bacteriol 1983, 154(3):1222-1226.
    • (1983) J Bacteriol , vol.154 , Issue.3 , pp. 1222-1226
    • Ratkowsky, D.A.1    Lowry, R.K.2    McMeekin, T.A.3    Stokes, A.N.4    Chandler, R.E.5
  • 40
    • 80053145555 scopus 로고    scopus 로고
    • Seasonal and temperature-associated increases in gram-negative bacterial bloodstream infections among hospitalized patients
    • Eber MR, Shardell M, Schweizer ML, Laxminarayan R, Perencevich EN: Seasonal and Temperature-Associated Increases in Gram-Negative Bacterial Bloodstream Infections among Hospitalized Patients. PLoS One 2011, 6(9):e25298.
    • (2011) PLoS One , vol.6 , Issue.9 , pp. e25298
    • Eber, M.R.1    Shardell, M.2    Schweizer, M.L.3    Laxminarayan, R.4    Perencevich, E.N.5
  • 42
    • 0026720474 scopus 로고
    • The effect of ambient-temperature extremes on tympanic and oral temperatures
    • Doyle F, Zehner WJ, Terndrup TE: The Effect of Ambient-Temperature Extremes on Tympanic and Oral Temperatures. Am J Emerg Med 1992, 10(4):285-289.
    • (1992) Am J Emerg Med , vol.10 , Issue.4 , pp. 285-289
    • Doyle, F.1    Zehner, W.J.2    Terndrup, T.E.3
  • 43
    • 0016696137 scopus 로고
    • Depression of sublingual temperature by cold saliva
    • Sloan REG, Keatinge WR: Depression of Sublingual Temperature by Cold Saliva. Brit Med J 1975, 1(5960):718-720.
    • (1975) Brit Med J , vol.1 , Issue.5960 , pp. 718-720
    • Sloan, R.E.G.1    Keatinge, W.R.2
  • 44
    • 33646832209 scopus 로고    scopus 로고
    • Evaluation of saliva as a source of human DNA for population and association studies
    • Quinque D, Kittler R, Kayser M, Stoneking M, Nasidze I: Evaluation of saliva as a source of human DNA for population and association studies. Anal Biochem 2006, 353(2):272-277.
    • (2006) Anal Biochem , vol.353 , Issue.2 , pp. 272-277
    • Quinque, D.1    Kittler, R.2    Kayser, M.3    Stoneking, M.4    Nasidze, I.5
  • 46
    • 39449089394 scopus 로고    scopus 로고
    • Parallel tagged sequencing on the 454 platform
    • Meyer M, Stenzel U, Hofreiter M: Parallel tagged sequencing on the 454 platform. Nat Protoc 2008, 3(2):267-278.
    • (2008) Nat Protoc , vol.3 , Issue.2 , pp. 267-278
    • Meyer, M.1    Stenzel, U.2    Hofreiter, M.3
  • 47
    • 33748799671 scopus 로고    scopus 로고
    • New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras
    • Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ: New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl Environ Microbiol 2006, 72(9):5734-5741.
    • (2006) Appl Environ Microbiol , vol.72 , Issue.9 , pp. 5734-5741
    • Ashelford, K.E.1    Chuzhanova, N.A.2    Fry, J.C.3    Jones, A.J.4    Weightman, A.J.5
  • 49
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows
    • Excoffier L, Lischer HEL: Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 2010, 10(3):564-567.
    • (2010) Mol Ecol Resour , vol.10 , Issue.3 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.L.2
  • 50
    • 65549111754 scopus 로고    scopus 로고
    • Infernal 1.0: Inference of RNA alignments
    • Nawrocki EP, Kolbe DL, Eddy SR: Infernal 1.0: inference of RNA alignments. Bioinformatics 2009, 25(10):1335-1337.
    • (2009) Bioinformatics , vol.25 , Issue.10 , pp. 1335-1337
    • Nawrocki, E.P.1    Kolbe, D.L.2    Eddy, S.R.3
  • 51
    • 67649327176 scopus 로고    scopus 로고
    • Fast tree: Computing large minimum evolution trees with profiles instead of a distance matrix
    • Price MN, Dehal PS, Arkin AP: Fast Tree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix. Mol Biol Evol 2009, 26(7):1641-1650.
    • (2009) Mol Biol Evol , vol.26 , Issue.7 , pp. 1641-1650
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 52
    • 73449128271 scopus 로고    scopus 로고
    • Fast UniFrac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
    • Hamady M, Lozupone C, Knight R: Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. Isme J 2010, 4(1):17-27.
    • (2010) Isme J , vol.4 , Issue.1 , pp. 17-27
    • Hamady, M.1    Lozupone, C.2    Knight, R.3
  • 53
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: New features for data integration and network visualization
    • Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T: Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 2011, 27(3):431-432.
    • (2011) Bioinformatics , vol.27 , Issue.3 , pp. 431-432
    • Smoot, M.E.1    Ono, K.2    Ruscheinski, J.3    Wang, P.L.4    Ideker, T.5
  • 54
    • 34848903220 scopus 로고    scopus 로고
    • From correlation to causation networks: A simple approximate learning algorithm and its application to high-dimensional plant gene expression data
    • Opgen-Rhein R, Strimmer K: From correlation to causation networks: A simple approximate learning algorithm and its application to high-dimensional plant gene expression data. BMC Syst Biol 2007, 1:37-51.
    • (2007) BMC Syst Biol , vol.1 , pp. 37-51
    • Opgen-Rhein, R.1    Strimmer, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.