Composition of human faecal microbiota in resistance to Campylobacter infection

Clinical Microbiology and Infection

Volumn 22, Issue 1, 2016, Pages 61.e1-61.e8

  Kampmann, C ^a,b,g   Dicksved, J ^b,c   Engstrand, L ^d,e   Rautelin, H ^b,f  

^a GÄVLE HOSPITAL   (Sweden)

^b UPPSALA UNIVERSITY   (Sweden)

^c SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^d KAROLINSKA INSTITUTE   (Sweden)

^e SCIENCE FOR LIFE LABORATORY   (Sweden)

^f UNIVERSITY OF HELSINKI   (Finland)

^g LUND UNIVERSITY HOSPITAL   (Sweden)

Author keywords

Campylobacter; Colonization resistance; Enteritis; Infection; Microbiota

Indexed keywords

ADULT; AMPLICON; ANTIMICROBIAL THERAPY; ARTICLE; CAMPYLOBACTER; CAMPYLOBACTERIOSIS; CLINICAL ARTICLE; FECES ANALYSIS; FECES MICROFLORA; FEMALE; GENE SEQUENCE; HIGH RISK PATIENT; HOME; HUMAN; INTESTINE FLORA; LACHNOSPIRACEAE; MALE; PATHOGENESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SALMONELLA; SPECIES COMPOSITION; SWEDEN; TRAVEL; ADOLESCENT; ANIMAL; BIOTA; CAMPYLOBACTER INFECTIONS; CHEMISTRY; DISEASE RESISTANCE; DNA SEQUENCE; FECES; GENETICS; HIGH THROUGHPUT SEQUENCING; MICROBIOLOGY; MIDDLE AGED; MOUSE; PROSPECTIVE STUDY; YOUNG ADULT;

BACTERIAL DNA; RIBOSOME DNA; RNA 16S;

ADOLESCENT; ADULT; ANIMALS; BIOTA; CAMPYLOBACTER INFECTIONS; DISEASE RESISTANCE; DNA, BACTERIAL; DNA, RIBOSOMAL; FECES; FEMALE; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; MALE; MICE; MIDDLE AGED; POLYMERASE CHAIN REACTION; PROSPECTIVE STUDIES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SWEDEN; TRAVEL; YOUNG ADULT;

EID: 84959553385     PISSN: 1198743X     EISSN: 14690691     Source Type: Journal    
DOI: 10.1016/j.cmi.2015.09.004     Document Type: Article

References (29)

1. Sommer F., Bäckhed F. The gut microbiota-masters of host development and physiology. Nat Rev Microbiol 2013, 11:227-238.
2. Blaser M.J. The microbiome revolution. J Clin Invest 2014, 124:4162-4165.
3. Jakobsson H.E., Abrahamsson T.R., Jenmalm M.C., Harris K., Quince C., Jernberg C., et al. Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section. Gut 2014, 63:559-566.
4. Monaghan T., Boswell T., Mahida Y.R. Recent advances in Clostridium difficile-associated disease. Gut 2008, 57:850-860.
5. Schubert A.M., Rogers M.A., Ring C., Mogle J., Petrosino J.P., Young V.B., et al. Microbiome data distinguish patients with Clostridium difficile infection and non-C. difficile-associated diarrhea from healthy controls. MBio 2014, 5:e01021-14.
6. Seekatz A.M., Young V.B. Clostridium difficile and the microbiota. J Clin Invest 2014, 124:4182-4189.
7. Ferreira R.B., Gill N., Willing B.P., Antunes L.C., Russell S.L., Croxen M.A., et al. The intestinal microbiota plays a role in Salmonella-induced colitis independent of pathogen colonization. PLoS One 2011, 6:e20338.
8. Stecher B., Chaffron S., Käppeli R., Hapfelmeier S., Freedrich S., Weber T.C., et al. Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria. PLoS Pathog 2010, 6:e1000711.
9. European Food Safety Authority, European Centre for Disease Prevention and Control The European Union Summary Report on Trends and Sources of Zoonoses, Zoonotic Agents and Food-borne Outbreaks in 2013. EFSA J 2015, 13:3991-4153.
10. Bereswill S., Fischer A., Plickert R., Haag L.M., Otto B., Kühl A.A., et al. Novel murine infection models provide deep insights into the "menage a trois" of Campylobacter jejuni, microbiota and host innate immunity. PLoS One 2011, 6:e20953.
11. Haag L.M., Fischer A., Otto B., Plickert R., Kühl A.A., Göbel U.B., et al. Intestinal microbiota shifts towards elevated commensal Escherichia coli loads abrogate colonization resistance against Campylobacter jejuni in mice. PLoS One 2012, 7:e35988.
12. Dicksved J., Ellstrom P., Engstrand L., Rautelin H. Susceptibility to Campylobacter infection is associated with the species composition of the human fecal microbiota. MBio 2014, 5:e01212-e01214.
13. Gonzalez I., Grant K.A., Richardson P.T., Park S.F., Collins M.D. Specific identification of the enteropathogens Campylobacter jejuni and Campylobacter coli by using a PCR test based on the ceuE gene encoding a putative virulence determinant. J Clin Microbiol 1997, 35:759-763.
14. Denis M., Soumet C., Rivoal K., Ermel K., Blivet D., Salvat G., et al. Development of a m-PCR assay for simultaneous identification of Campylobacter jejuni and C. coli. Lett Appl Microbiol 1999, 29:406-410.
15. Hugerth L.W., Wefer H.A., Lundin S., Jakobsson H.E., Lindberg M., Rodin S., et al. DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies. Appl Environ Microbiol 2014, 80:5116-5123.
16. Caporaso J.G., Kuczynski J., Stombaugh J., Bittinger K., Bushman F.D., Costello E.K., et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010, 7:335-336.
17. Edgar R.C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010, 26:2460-2461.
18. Caporaso J.G., Bittinger K., Bushman F.D., DeSantis T.Z., Andersen G.L., Knight R. PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 2010, 26:266-267.
19. Engstrand Lilja H., Wefer H.A., Nyström N., Finkel Y., Engstrand L. Intestinal dysbiosis in children with short bowel syndrome is associated with impaired outcome. Microbiome 2015, 3:18.
20. Hammer O., Harper D.A., Ryan P.D. PAST: paleontological statistics software package for education and data analysis. Palaeontol Electronica 2001, 4:1-9.
21. van Putten J.P., van Alphen L.B., Wösten M.M., deZoete M.R. Molecular mechanism of Campylobacter infection. Curr Topics Microbiol Immunol 2009, 337:197-230.
22. Miller C.P., Bohnhoff M., Rifkind D. The effect of an antibiotic on the susceptibility of the mouse's intestinal tract to Salmonella infection. Trans Am Clin Climatol Assoc 1956, 68:51-55. discussion 55-8.
23. Bohnhoff M., Miller C.P. Enhanced susceptibility to Salmonella infection in streptomycin-treated mice. J Infect Dis 1962, 111:117-127.
24. Andersson A.F., Lindberg M., Jakobsson H., Bäckhed F., Nyrén P., Engstrand L. Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS One 2008, 3:e2836.
25. David L.A., Materna A.C., Friedman J., Campos-Baptista M.I., Blackburn M.C., Perrotta A., et al. Host lifestyle affects human microbiota on daily timescales. Genome Biol 2014, 15:R89.
26. Zoetendal E.G., Akkermans A.D., De Vos W.M. Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. Appl Environ Microbiol 1998, 64:3854-3859.
27. Faith J.J., Guruge J.L., Charbonneau M., Subramanian S., Seedorf H., Goodman A.L., et al. The long-term stability of the human gut microbiota. Science 2013, 341:1237439.
28. Jakobsson H.E., Jernberg C., Andersson A.F., Sjölund-Karlsson M., Jansson J.K., Engstrand L. Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome. PLoS One 2010, 5:e9836.
29. Modi S.R., Collins J.J., Relman D.A. Antibiotics and the gut microbiota. J Clin Invest 2014, 124:4212-4218.