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Volumn 12, Issue 12, 2016, Pages

A Point Mutation in a lincRNA Upstream of GDNF Is Associated to a Canine Insensitivity to Pain: A Spontaneous Model for Human Sensory Neuropathies

(21)  Plassais, Jocelyn a,b   Lagoutte, Laetitia a,b   Correard, Solenne a,b   Paradis, Manon c   Guaguère, Eric d   Hédan, Benoit a,b   Pommier, Alix a,b   Botherel, Nadine a,b   Cadiergues, Marie Christine e   Pilorge, Philippe d   Silversides, David c   Bizot, Maud a,b   Samuels, Mark f   Arnan, Carme g,h,i   Johnson, Rory g,h,i   Hitte, Christophe a,b   Salbert, Gilles a,b   Méreau, Agnès a,b   Quignon, Pascale a,b   Derrien, Thomas a,b   more..


Author keywords

[No Author keywords available]

Indexed keywords

GLIAL CELL LINE DERIVED NEUROTROPHIC FACTOR; LONG UNTRANSLATED RNA; MESSENGER RNA;

EID: 85007602090     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1006482     Document Type: Article
Times cited : (27)

References (83)
  • 1
    • 84922324293 scopus 로고    scopus 로고
    • Hereditary motor and sensory neuropathies: Understanding molecular pathogenesis could lead to future treatment strategies
    • 25108281,.;: –
    • Jerath NU, Shy ME, Hereditary motor and sensory neuropathies: Understanding molecular pathogenesis could lead to future treatment strategies. Biochim Biophys Acta. 2015;1852: 667–678. doi: 10.1016/j.bbadis.2014.07.03125108281
    • (2015) Biochim Biophys Acta , vol.1852 , pp. 667-678
    • Jerath, N.U.1    Shy, M.E.2
  • 2
    • 84857036952 scopus 로고    scopus 로고
    • Mechanisms of disease in hereditary sensory and autonomic neuropathies
    • 22270030,. Nature Publishing Group;;: –
    • Rotthier A, Baets J, Timmerman V, Janssens K, Mechanisms of disease in hereditary sensory and autonomic neuropathies. Nat Rev Neurol. Nature Publishing Group; 2012;8: 73–85. doi: 10.1038/nrneurol.2011.22722270030
    • (2012) Nat Rev Neurol , vol.8 , pp. 73-85
    • Rotthier, A.1    Baets, J.2    Timmerman, V.3    Janssens, K.4
  • 3
    • 36749026623 scopus 로고    scopus 로고
    • Hereditary sensory and autonomic neuropathies: types II, III, and IV
    • 17915006,. BioMed Central Ltd;;:
    • Axelrod FB, Gold-von Simson G, Hereditary sensory and autonomic neuropathies: types II, III, and IV. Orphanet Journal of Rare Diseases. BioMed Central Ltd; 2007;2: 39. doi: 10.1186/1750-1172-2-3917915006
    • (2007) Orphanet Journal of Rare Diseases , vol.2 , pp. 39
    • Axelrod, F.B.1    Gold-von Simson, G.2
  • 4
    • 84881502032 scopus 로고    scopus 로고
    • Hereditary sensory and autonomic neuropathies
    • 23931820,.;: –
    • Auer-Grumbach M, Hereditary sensory and autonomic neuropathies. Handb Clin Neurol. 2013;115: 893–906. doi: 10.1016/B978-0-444-52902-2.00050-323931820
    • (2013) Handb Clin Neurol , vol.115 , pp. 893-906
    • Auer-Grumbach, M.1
  • 5
    • 84893344914 scopus 로고    scopus 로고
    • Neurobiology of pain, interoception and emotional response: lessons from nerve growth factor-dependent neurons
    • 24494678,.;: –
    • Indo Y, Neurobiology of pain, interoception and emotional response: lessons from nerve growth factor-dependent neurons. Eur J Neurosci. 2014;39: 375–391. doi: 10.1111/ejn.1244824494678
    • (2014) Eur J Neurosci , vol.39 , pp. 375-391
    • Indo, Y.1
  • 6
    • 42549155682 scopus 로고    scopus 로고
    • Hereditary sensory neuropathy type I
    • 18348718,. BioMed Central Ltd;;:
    • Auer-Grumbach M, Hereditary sensory neuropathy type I. Orphanet Journal of Rare Diseases. BioMed Central Ltd; 2008;3: 7. doi: 10.1186/1750-1172-3-718348718
    • (2008) Orphanet Journal of Rare Diseases , vol.3 , pp. 7
    • Auer-Grumbach, M.1
  • 7
    • 84879103495 scopus 로고    scopus 로고
    • Hereditary sensory and autonomic neuropathy type 1 (HSANI) caused by a novel mutation in SPTLC2
    • 23658386,.. Lippincott Williams & Wilkins;;: –
    • Murphy SM, Ernst D, Wei Y, Laurà M, Liu Y-T, Polke J, et al. Hereditary sensory and autonomic neuropathy type 1 (HSANI) caused by a novel mutation in SPTLC2. Neurology. Lippincott Williams & Wilkins; 2013;80: 2106–2111. doi: 10.1212/WNL.0b013e318295d78923658386
    • (2013) Neurology , vol.80 , pp. 2106-2111
    • Murphy, S.M.1    Ernst, D.2    Wei, Y.3    Laurà, M.4    Liu, Y.-T.5    Polke, J.6
  • 8
    • 84940645158 scopus 로고    scopus 로고
    • CMT subtypes and disease burden in patients enrolled in the Inherited Neuropathies Consortium natural history study: a cross-sectional analysis
    • 25430934,.. BMJ Publishing Group Ltd;;: –
    • Fridman V, Bundy B, Reilly MM, Pareyson D, Bacon C, Burns J, et al. CMT subtypes and disease burden in patients enrolled in the Inherited Neuropathies Consortium natural history study: a cross-sectional analysis. J Neurol Neurosurg Psychiatr. BMJ Publishing Group Ltd; 2015;86: 873–878. doi: 10.1136/jnnp-2014-30882625430934
    • (2015) J Neurol Neurosurg Psychiatr , vol.86 , pp. 873-878
    • Fridman, V.1    Bundy, B.2    Reilly, M.M.3    Pareyson, D.4    Bacon, C.5    Burns, J.6
  • 9
    • 79955867148 scopus 로고    scopus 로고
    • Canine inherited motor and sensory neuropathies: an updated classification in 22 breeds and comparison to Charcot-Marie-Tooth disease
    • 20638305,.;: –
    • Granger N, Canine inherited motor and sensory neuropathies: an updated classification in 22 breeds and comparison to Charcot-Marie-Tooth disease. Vet J. 2011;188: 274–285. doi: 10.1016/j.tvjl.2010.06.00320638305
    • (2011) Vet J , vol.188 , pp. 274-285
    • Granger, N.1
  • 10
    • 9444243847 scopus 로고    scopus 로고
    • Dog star rising: the canine genetic system
    • 15573122,. Nature Publishing Group;;: –
    • Sutter NB, Ostrander EA, Dog star rising: the canine genetic system. Nat Rev Genet. Nature Publishing Group; 2004;5: 900–910. doi: 10.1038/nrg149215573122
    • (2004) Nat Rev Genet , vol.5 , pp. 900-910
    • Sutter, N.B.1    Ostrander, E.A.2
  • 11
    • 28644447707 scopus 로고    scopus 로고
    • Genome sequence, comparative analysis and haplotype structure of the domestic dog
    • 16341006,.. Nature Publishing Group;;: –
    • Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, et al. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature. Nature Publishing Group; 2005;438: 803–819. doi: 10.1038/nature0433816341006
    • (2005) Nature , vol.438 , pp. 803-819
    • Lindblad-Toh, K.1    Wade, C.M.2    Mikkelsen, T.S.3    Karlsson, E.K.4    Jaffe, D.B.5    Kamal, M.6
  • 12
    • 80055088614 scopus 로고    scopus 로고
    • Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping
    • 22022279,.. Public Library of Science;;:
    • Vaysse A, Ratnakumar A, Derrien T, Axelsson E, Rosengren Pielberg G, Sigurdsson S, Akey JM, et al. Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping. PLoS Genet. Public Library of Science; 2011;7: e1002316. doi: 10.1371/journal.pgen.100231622022279
    • (2011) PLoS Genet , vol.7
    • Vaysse, A.1    Ratnakumar, A.2    Derrien, T.3    Axelsson, E.4    Rosengren Pielberg, G.5    Sigurdsson, S.6    Akey, J.M.7
  • 13
    • 84856241736 scopus 로고    scopus 로고
    • PNPLA1 mutations cause autosomal recessive congenital ichthyosis in golden retriever dogs and humans
    • 22246504,..;: –
    • Grall A, Guaguère E, Planchais S, Grond S, Bourrat E, Hausser I, et al. PNPLA1 mutations cause autosomal recessive congenital ichthyosis in golden retriever dogs and humans. Nat Genet. 2012;44: 140–147. doi: 10.1038/ng.105622246504
    • (2012) Nat Genet , vol.44 , pp. 140-147
    • Grall, A.1    Guaguère, E.2    Planchais, S.3    Grond, S.4    Bourrat, E.5    Hausser, I.6
  • 14
    • 78651260210 scopus 로고    scopus 로고
    • CCDC39 is required for assembly of inner dynein arms and the dynein regulatory complex and for normal ciliary motility in humans and dogs
    • 21131972,..;: –
    • Merveille A-C, Davis EE, Becker-Heck A, Legendre M, Amirav I, Bataille G, et al. CCDC39 is required for assembly of inner dynein arms and the dynein regulatory complex and for normal ciliary motility in humans and dogs. Nat Genet. 2011;43: 72–78. doi: 10.1038/ng.72621131972
    • (2011) Nat Genet , vol.43 , pp. 72-78
    • Merveille, A.-C.1    Davis, E.E.2    Becker-Heck, A.3    Legendre, M.4    Amirav, I.5    Bataille, G.6
  • 15
    • 79551491904 scopus 로고    scopus 로고
    • Acral mutilation syndrome in a miniature pinscher
    • 20961556,.;: –
    • Bardagí M, Montoliu P, Ferrer L, Fondevila D, Pumarola M, Acral mutilation syndrome in a miniature pinscher. J Comp Pathol. 2011;144: 235–238. doi: 10.1016/j.jcpa.2010.08.01420961556
    • (2011) J Comp Pathol , vol.144 , pp. 235-238
    • Bardagí, M.1    Montoliu, P.2    Ferrer, L.3    Fondevila, D.4    Pumarola, M.5
  • 16
    • 0015850577 scopus 로고
    • Comparative problems of acrodystrophic neuropathies in man and dogs
    • 4725277, ].;: –
    • Pivník L, Comparative problems of acrodystrophic neuropathies in man and dogs]. Schweiz Arch Neurol Neurochir Psychiatr. 1973;112: 365–371. 4725277
    • (1973) Schweiz Arch Neurol Neurochir Psychiatr , vol.112 , pp. 365-371
    • Pivník, L.1
  • 17
    • 5044250917 scopus 로고
    • Die zehernekrose bei kurghaarigen
    • Vorstehlunden Kleintierproxis.;;:
    • Sanda A, Pivník L, Die zehernekrose bei kurghaarigen. Vorstehlunden Kleintierproxis. Vorstehlunden Kleintierproxis; 1964;9: 76.
    • (1964) Vorstehlunden Kleintierproxis , vol.9 , pp. 76
    • Sanda, A.1    Pivník, L.2
  • 18
    • 0019349860 scopus 로고
    • Acral mutilation and nociceptive loss in English pointer dogs. A canine sensory neuropathy
    • 6259871,.;: –
    • Cummings JF, de Lahunta A, Winn SS, Acral mutilation and nociceptive loss in English pointer dogs. A canine sensory neuropathy. Acta Neuropathol. 1981;53: 119–127. 6259871
    • (1981) Acta Neuropathol , vol.53 , pp. 119-127
    • Cummings, J.F.1    de Lahunta, A.2    Winn, S.S.3
  • 19
    • 0020957236 scopus 로고
    • Hereditary sensory neuropathy. Nociceptive loss and acral mutilation in pointer dogs: canine hereditary sensory neuropathy
    • 6574711,. American Society for Investigative Pathology;;: –
    • Cummings JF, de Lahunta A, Braund KG, Mitchell WJ, Hereditary sensory neuropathy. Nociceptive loss and acral mutilation in pointer dogs: canine hereditary sensory neuropathy. Am J Pathol. American Society for Investigative Pathology; 1983;112: 136–138. 6574711
    • (1983) Am J Pathol , vol.112 , pp. 136-138
    • Cummings, J.F.1    de Lahunta, A.2    Braund, K.G.3    Mitchell, W.J.4
  • 20
    • 0021319551 scopus 로고
    • Reduced substance P-like immunoreactivity in hereditary sensory neuropathy of pointer dogs
    • 6203326,.;: –
    • Cummings JF, de Lahunta A, Simpson ST, McDonald JM, Reduced substance P-like immunoreactivity in hereditary sensory neuropathy of pointer dogs. Acta Neuropathol. 1984;63: 33–40. 6203326
    • (1984) Acta Neuropathol , vol.63 , pp. 33-40
    • Cummings, J.F.1    de Lahunta, A.2    Simpson, S.T.3    McDonald, J.M.4
  • 21
    • 18544380344 scopus 로고    scopus 로고
    • Acral mutilation and analgesia in 13 French spaniels
    • 15842538,. Blackwell Science Ltd;;: –
    • Paradis M, de Jaham C, Pagé N, Sauve F, Helie P, Acral mutilation and analgesia in 13 French spaniels. Vet Dermatol. Blackwell Science Ltd; 2005;16: 87–93. doi: 10.1111/j.1365-3164.2005.00443.x15842538
    • (2005) Vet Dermatol , vol.16 , pp. 87-93
    • Paradis, M.1    de Jaham, C.2    Pagé, N.3    Sauve, F.4    Helie, P.5
  • 22
    • 0030734892 scopus 로고    scopus 로고
    • IB4-binding DRG neurons switch from NGF to GDNF dependence in early postnatal life
    • 9354331,..;: –
    • Molliver DC, Wright DE, Leitner ML, Parsadanian AS, Doster K, Wen D, et al. IB4-binding DRG neurons switch from NGF to GDNF dependence in early postnatal life. Neuron. 1997;19: 849–861. 9354331
    • (1997) Neuron , vol.19 , pp. 849-861
    • Molliver, D.C.1    Wright, D.E.2    Leitner, M.L.3    Parsadanian, A.S.4    Doster, K.5    Wen, D.6
  • 23
    • 0028884522 scopus 로고
    • GDNF is an age-specific survival factor for sensory and autonomic neurons
    • 7576631,.;: –
    • Buj-Bello A, Buchman VL, Horton A, Rosenthal A, Davies AM, GDNF is an age-specific survival factor for sensory and autonomic neurons. Neuron. 1995;15: 821–828. 7576631
    • (1995) Neuron , vol.15 , pp. 821-828
    • Buj-Bello, A.1    Buchman, V.L.2    Horton, A.3    Rosenthal, A.4    Davies, A.M.5
  • 24
    • 0036801934 scopus 로고    scopus 로고
    • Neurotrophic factors and axonal growth
    • 12367631,.;: –
    • Markus A, Patel TD, Snider WD, Neurotrophic factors and axonal growth. Curr Opin Neurobiol. 2002;12: 523–531. 12367631
    • (2002) Curr Opin Neurobiol , vol.12 , pp. 523-531
    • Markus, A.1    Patel, T.D.2    Snider, W.D.3
  • 25
    • 10044254089 scopus 로고    scopus 로고
    • Neurotrophin and GDNF family ligands promote survival and alter excitotoxic vulnerability of neurons derived from murine embryonic stem cells
    • 15589513,..;: –
    • Lee C-S, Tee LY, Dusenbery S, Takata T, Golden JP, Pierchala BA, et al. Neurotrophin and GDNF family ligands promote survival and alter excitotoxic vulnerability of neurons derived from murine embryonic stem cells. Exp Neurol. 2005;191: 65–76. doi: 10.1016/j.expneurol.2004.08.02515589513
    • (2005) Exp Neurol , vol.191 , pp. 65-76
    • Lee, C.-S.1    Tee, L.Y.2    Dusenbery, S.3    Takata, T.4    Golden, J.P.5    Pierchala, B.A.6
  • 26
    • 0036226603 scopus 로고    scopus 로고
    • BLAT—the BLAST-like alignment tool
    • 11932250,. Cold Spring Harbor Lab;;: –
    • Kent WJ, BLAT—the BLAST-like alignment tool. Genome Res. Cold Spring Harbor Lab; 2002;12: 656–664. doi: 10.1101/gr.22920211932250
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 27
    • 84976878634 scopus 로고    scopus 로고
    • The UCSC Genome Browser database: 2016 update
    • 26590259,.. Oxford University Press;;: –
    • Speir ML, Zweig AS, Rosenbloom KR, Raney BJ, Paten B, Nejad P, et al. The UCSC Genome Browser database: 2016 update. Nucleic Acids Res. Oxford University Press; 2016;44: D717–25. doi: 10.1093/nar/gkv127526590259
    • (2016) Nucleic Acids Res , vol.44 , pp. D717-D725
    • Speir, M.L.1    Zweig, A.S.2    Rosenbloom, K.R.3    Raney, B.J.4    Paten, B.5    Nejad, P.6
  • 28
    • 33847255798 scopus 로고    scopus 로고
    • AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps
    • 17145741,. Oxford University Press;;: –
    • Derrien T, André C, Galibert F, Hitte C, AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps. Bioinformatics. Oxford University Press; 2007;23: 498–499. doi: 10.1093/bioinformatics/btl61817145741
    • (2007) Bioinformatics , vol.23 , pp. 498-499
    • Derrien, T.1    André, C.2    Galibert, F.3    Hitte, C.4
  • 29
    • 84455169910 scopus 로고    scopus 로고
    • Identification of novel GDNF isoforms and cis-antisense GDNFOS gene and their regulation in human middle temporal gyrus of Alzheimer disease
    • 22081608,.;: –
    • Airavaara M, Pletnikova O, Doyle ME, Zhang YE, Troncoso JC, Liu Q-R, Identification of novel GDNF isoforms and cis-antisense GDNFOS gene and their regulation in human middle temporal gyrus of Alzheimer disease. J Biol Chem. 2011;286: 45093–45102. doi: 10.1074/jbc.M111.31025022081608
    • (2011) J Biol Chem , vol.286 , pp. 45093-45102
    • Airavaara, M.1    Pletnikova, O.2    Doyle, M.E.3    Zhang, Y.E.4    Troncoso, J.C.5    Liu, Q.-R.6
  • 30
    • 84988706127 scopus 로고    scopus 로고
    • Bioinformatics Pipeline for Transcriptome Sequencing Analysis
    • 27662878,. New York, NY: Springer New York;;: –
    • Djebali S, Wucher V, Foissac S, Hitte C, Corre E, Derrien T, Bioinformatics Pipeline for Transcriptome Sequencing Analysis. Methods Mol Biol. New York, NY: Springer New York; 2017;1468: 201–219. doi: 10.1007/978-1-4939-4035-6_1427662878
    • (2017) Methods Mol Biol , vol.1468 , pp. 201-219
    • Djebali, S.1    Wucher, V.2    Foissac, S.3    Hitte, C.4    Corre, E.5    Derrien, T.6
  • 31
    • 79961126069 scopus 로고    scopus 로고
    • LUPA: a European initiative taking advantage of the canine genome architecture for unravelling complex disorders in both human and dogs
    • 21752675,..;: –
    • Lequarré A-S, Andersson L, André C, Fredholm M, Hitte C, Leeb T, et al. LUPA: a European initiative taking advantage of the canine genome architecture for unravelling complex disorders in both human and dogs. Vet J. 2011;189: 155–159. doi: 10.1016/j.tvjl.2011.06.01321752675
    • (2011) Vet J , vol.189 , pp. 155-159
    • Lequarré, A.-S.1    Andersson, L.2    André, C.3    Fredholm, M.4    Hitte, C.5    Leeb, T.6
  • 32
    • 84898718409 scopus 로고    scopus 로고
    • An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts
    • 24625832,..;:
    • Hoeppner MP, Lundquist A, Pirun M, Meadows JRS, Zamani N, Johnson J, et al. An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts. PLoS ONE. 2014;9: e91172. doi: 10.1371/journal.pone.009117224625832
    • (2014) PLoS ONE , vol.9
    • Hoeppner, M.P.1    Lundquist, A.2    Pirun, M.3    Meadows, J.R.S.4    Zamani, N.5    Johnson, J.6
  • 33
    • 34547582418 scopus 로고    scopus 로고
    • CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
    • 17631615,.. Oxford University Press;;: –
    • Kong L, Zhang Y, Ye Z-Q, Liu X-Q, Zhao S-Q, Wei L, et al. CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res. Oxford University Press; 2007;35: W345–9. doi: 10.1093/nar/gkm39117631615
    • (2007) Nucleic Acids Res , vol.35 , pp. W345-W349
    • Kong, L.1    Zhang, Y.2    Ye, Z.-Q.3    Liu, X.-Q.4    Zhao, S.-Q.5    Wei, L.6
  • 34
    • 84876020023 scopus 로고    scopus 로고
    • CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model
    • 23335781,. Oxford University Press;;: –
    • Wang L, Park HJ, Dasari S, Wang S, Kocher J-P, Li W, CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model. Nucleic Acids Res. Oxford University Press; 2013;41: e74–e74. doi: 10.1093/nar/gkt00623335781
    • (2013) Nucleic Acids Res , vol.41
    • Wang, L.1    Park, H.J.2    Dasari, S.3    Wang, S.4    Kocher, J.-P.5    Li, W.6
  • 35
    • 84908133238 scopus 로고    scopus 로고
    • PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme
    • 25239089,. BioMed Central Ltd;;:
    • Li A, Zhang J, Zhou Z, PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme. BMC Bioinformatics. BioMed Central Ltd; 2014;15: 311. doi: 10.1186/1471-2105-15-31125239089
    • (2014) BMC Bioinformatics , vol.15 , pp. 311
    • Li, A.1    Zhang, J.2    Zhou, Z.3
  • 36
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • 22955616,. Nature Research;;: –
    • ENCODE Project ConsortiumAn integrated encyclopedia of DNA elements in the human genome. Nature. Nature Research; 2012;489: 57–74. doi: 10.1038/nature1124722955616
    • (2012) Nature , vol.489 , pp. 57-74
  • 37
    • 84892465462 scopus 로고    scopus 로고
    • Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals
    • 24438357,.;:
    • Uesaka M, Nishimura O, Go Y, Nakashima K, Agata K, Imamura T, Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals. BMC Genomics. 2014;15: 35. doi: 10.1186/1471-2164-15-3524438357
    • (2014) BMC Genomics , vol.15 , pp. 35
    • Uesaka, M.1    Nishimura, O.2    Go, Y.3    Nakashima, K.4    Agata, K.5    Imamura, T.6
  • 38
    • 84879823671 scopus 로고    scopus 로고
    • Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases
    • 23756188,.;: –
    • Wu P, Zuo X, Deng H, Liu X, Liu L, Ji A, Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases. Brain Res Bull. 2013;97: 69–80. doi: 10.1016/j.brainresbull.2013.06.00123756188
    • (2013) Brain Res Bull , vol.97 , pp. 69-80
    • Wu, P.1    Zuo, X.2    Deng, H.3    Liu, X.4    Liu, L.5    Ji, A.6
  • 39
    • 84920516971 scopus 로고    scopus 로고
    • Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers
    • 25561718,. Cold Spring Harbor Lab;;:
    • Kim T-K, Hemberg M, Gray JM, Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers. Cold Spring Harb Perspect Biol. Cold Spring Harbor Lab; 2015;7: a018622. doi: 10.1101/cshperspect.a01862225561718
    • (2015) Cold Spring Harb Perspect Biol , vol.7 , pp. a018622
    • Kim, T.-K.1    Hemberg, M.2    Gray, J.M.3
  • 40
    • 84874248583 scopus 로고    scopus 로고
    • Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells
    • 23382218,..;: –
    • Sigova AA, Mullen AC, Molinie B, Gupta S, Orlando DA, Guenther MG, et al. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. Proc Natl Acad Sci USA. 2013;110: 2876–2881. doi: 10.1073/pnas.122190411023382218
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 2876-2881
    • Sigova, A.A.1    Mullen, A.C.2    Molinie, B.3    Gupta, S.4    Orlando, D.A.5    Guenther, M.G.6
  • 41
    • 84890772287 scopus 로고    scopus 로고
    • Divergent transcription is associated with promoters of transcriptional regulators
    • 24365181,.. BioMed Central;;:
    • Lepoivre C, Belhocine M, Bergon A, Griffon A, Yammine M, Vanhille L, et al. Divergent transcription is associated with promoters of transcriptional regulators. BMC Genomics. BioMed Central; 2013;14: 914. doi: 10.1186/1471-2164-14-91424365181
    • (2013) BMC Genomics , vol.14 , pp. 914
    • Lepoivre, C.1    Belhocine, M.2    Bergon, A.3    Griffon, A.4    Yammine, M.5    Vanhille, L.6
  • 42
    • 34250307630 scopus 로고    scopus 로고
    • The landscape of histone modifications across 1% of the human genome in five human cell lines
    • 17567990,.. Cold Spring Harbor Lab;;: –
    • Koch CM, Andrews RM, Flicek P, Dillon SC, Karaöz U, Clelland GK, et al. The landscape of histone modifications across 1% of the human genome in five human cell lines. Genome Res. Cold Spring Harbor Lab; 2007;17: 691–707. doi: 10.1101/gr.570420717567990
    • (2007) Genome Res , vol.17 , pp. 691-707
    • Koch, C.M.1    Andrews, R.M.2    Flicek, P.3    Dillon, S.C.4    Karaöz, U.5    Clelland, G.K.6
  • 43
    • 80054910846 scopus 로고    scopus 로고
    • H3K4 tri-methylation provides an epigenetic signature of active enhancers
    • 21847099,.. EMBO Press;;: –
    • Pekowska A, Benoukraf T, Zacarias-Cabeza J, Belhocine M, Koch F, Holota H, et al. H3K4 tri-methylation provides an epigenetic signature of active enhancers. EMBO J. EMBO Press; 2011;30: 4198–4210. doi: 10.1038/emboj.2011.29521847099
    • (2011) EMBO J , vol.30 , pp. 4198-4210
    • Pekowska, A.1    Benoukraf, T.2    Zacarias-Cabeza, J.3    Belhocine, M.4    Koch, F.5    Holota, H.6
  • 44
    • 0032476830 scopus 로고    scopus 로고
    • Expression of glial cell line-derived neurotrophic factor and GDNFR-alpha mRNAs in human peripheral neuropathies
    • 9853108,..;: –
    • Yamamoto M, Mitsuma N, Ito Y, Hattori N, Nagamatsu M, Li M, et al. Expression of glial cell line-derived neurotrophic factor and GDNFR-alpha mRNAs in human peripheral neuropathies. Brain Res. 1998;809: 175–181. 9853108
    • (1998) Brain Res , vol.809 , pp. 175-181
    • Yamamoto, M.1    Mitsuma, N.2    Ito, Y.3    Hattori, N.4    Nagamatsu, M.5    Li, M.6
  • 45
    • 0029854439 scopus 로고    scopus 로고
    • Expression of mRNAs for neurotrophic factors (NGF, BDNF, NT-3, and GDNF) and their receptors (p75NGFR, trkA, trkB, and trkC) in the adult human peripheral nervous system and nonneural tissues
    • 8895847,.;: –
    • Yamamoto M, Sobue G, Yamamoto K, Terao S, Mitsuma T, Expression of mRNAs for neurotrophic factors (NGF, BDNF, NT-3, and GDNF) and their receptors (p75NGFR, trkA, trkB, and trkC) in the adult human peripheral nervous system and nonneural tissues. Neurochem Res. 1996;21: 929–938. 8895847
    • (1996) Neurochem Res , vol.21 , pp. 929-938
    • Yamamoto, M.1    Sobue, G.2    Yamamoto, K.3    Terao, S.4    Mitsuma, T.5
  • 46
    • 0031031298 scopus 로고    scopus 로고
    • Glial cell line-derived neurotrophic factor (GDNF) is a neurotrophic factor for sensory neurons: comparison with the effects of the neurotrophins
    • 8989660,.;: –
    • Matheson CR, Carnahan J, Urich JL, Bocangel D, Zhang TJ, Yan Q, Glial cell line-derived neurotrophic factor (GDNF) is a neurotrophic factor for sensory neurons: comparison with the effects of the neurotrophins. J Neurobiol. 1997;32: 22–32. 8989660
    • (1997) J Neurobiol , vol.32 , pp. 22-32
    • Matheson, C.R.1    Carnahan, J.2    Urich, J.L.3    Bocangel, D.4    Zhang, T.J.5    Yan, Q.6
  • 47
    • 84978877011 scopus 로고    scopus 로고
    • Transcriptomic analyses of genes and tissues in inherited sensory neuropathies
    • 27343803,.;: –
    • Sapio MR, Goswami SC, Gross JR, Mannes AJ, Iadarola MJ, Transcriptomic analyses of genes and tissues in inherited sensory neuropathies. Exp Neurol. 2016;283: 375–395. doi: 10.1016/j.expneurol.2016.06.02327343803
    • (2016) Exp Neurol , vol.283 , pp. 375-395
    • Sapio, M.R.1    Goswami, S.C.2    Gross, J.R.3    Mannes, A.J.4    Iadarola, M.J.5
  • 48
    • 84933278181 scopus 로고    scopus 로고
    • Recurrent somatic mutations in regulatory regions of human cancer genomes
    • 26053494,. Nature Publishing Group;;: –
    • Melton C, Reuter JA, Spacek DV, Snyder M, Recurrent somatic mutations in regulatory regions of human cancer genomes. Nat Genet. Nature Publishing Group; 2015;47: 710–716. doi: 10.1038/ng.333226053494
    • (2015) Nat Genet , vol.47 , pp. 710-716
    • Melton, C.1    Reuter, J.A.2    Spacek, D.V.3    Snyder, M.4
  • 49
    • 84933278077 scopus 로고    scopus 로고
    • CTCF/cohesin-binding sites are frequently mutated in cancer
    • 26053496,.. Nature Publishing Group;;: –
    • Katainen R, Dave K, Pitkänen E, Palin K, Kivioja T, Välimäki N, et al. CTCF/cohesin-binding sites are frequently mutated in cancer. Nat Genet. Nature Publishing Group; 2015;47: 818–821. doi: 10.1038/ng.333526053496
    • (2015) Nat Genet , vol.47 , pp. 818-821
    • Katainen, R.1    Dave, K.2    Pitkänen, E.3    Palin, K.4    Kivioja, T.5    Välimäki, N.6
  • 50
    • 84898819475 scopus 로고    scopus 로고
    • An etiologic regulatory mutation in IRF6 with loss- and gain-of-function effects
    • 24442519,.. Oxford University Press;;: –
    • Fakhouri WD, Rahimov F, Attanasio C, Kouwenhoven EN, Ferreira De Lima RL, Felix TM, et al. An etiologic regulatory mutation in IRF6 with loss- and gain-of-function effects. Hum Mol Genet. Oxford University Press; 2014;23: 2711–2720. doi: 10.1093/hmg/ddt66424442519
    • (2014) Hum Mol Genet , vol.23 , pp. 2711-2720
    • Fakhouri, W.D.1    Rahimov, F.2    Attanasio, C.3    Kouwenhoven, E.N.4    Ferreira De Lima, R.L.5    Felix, T.M.6
  • 51
    • 84891347416 scopus 로고    scopus 로고
    • Recessive mutations in a distal PTF1A enhancer cause isolated pancreatic agenesis
    • 24212882,..;: –
    • Weedon MN, Cebola I, Patch A-M, Flanagan SE, De Franco E, Caswell R, et al. Recessive mutations in a distal PTF1A enhancer cause isolated pancreatic agenesis. Nat Genet. 2014;46: 61–64. doi: 10.1038/ng.282624212882
    • (2014) Nat Genet , vol.46 , pp. 61-64
    • Weedon, M.N.1    Cebola, I.2    Patch, A.-M.3    Flanagan, S.E.4    De Franco, E.5    Caswell, R.6
  • 52
    • 0141448981 scopus 로고    scopus 로고
    • Glial cell line-derived neurotrophic factor and brain-derived neurotrophic factor sustain the axonal regeneration of chronically axotomized motoneurons in vivo
    • 14552902,.;: –
    • Boyd JG, Gordon T, Glial cell line-derived neurotrophic factor and brain-derived neurotrophic factor sustain the axonal regeneration of chronically axotomized motoneurons in vivo. Exp Neurol. 2003;183: 610–619. 14552902
    • (2003) Exp Neurol , vol.183 , pp. 610-619
    • Boyd, J.G.1    Gordon, T.2
  • 53
    • 0042786843 scopus 로고    scopus 로고
    • Neurotrophic factors and their receptors in axonal regeneration and functional recovery after peripheral nerve injury
    • 12845152,.;: –
    • Boyd JG, Gordon T, Neurotrophic factors and their receptors in axonal regeneration and functional recovery after peripheral nerve injury. Mol Neurobiol. 2003;27: 277–324. doi: 10.1385/MN:27:3:27712845152
    • (2003) Mol Neurobiol , vol.27 , pp. 277-324
    • Boyd, J.G.1    Gordon, T.2
  • 54
    • 84921908289 scopus 로고    scopus 로고
    • Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications
    • 25218058,.;: –
    • Kapusta A, Feschotte C, Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications. Trends Genet. 2014;30: 439–452. doi: 10.1016/j.tig.2014.08.00425218058
    • (2014) Trends Genet , vol.30 , pp. 439-452
    • Kapusta, A.1    Feschotte, C.2
  • 55
    • 0035807876 scopus 로고    scopus 로고
    • Neurotrophins are key mediators of the myelination program in the peripheral nervous system
    • 11717413,. National Acad Sciences;;: –
    • Chan JR, Cosgaya JM, Wu YJ, Shooter EM, Neurotrophins are key mediators of the myelination program in the peripheral nervous system. Proc Natl Acad Sci USA. National Acad Sciences; 2001;98: 14661–14668. doi: 10.1073/pnas.25154339811717413
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 14661-14668
    • Chan, J.R.1    Cosgaya, J.M.2    Wu, Y.J.3    Shooter, E.M.4
  • 56
    • 84900824932 scopus 로고    scopus 로고
    • Neuronal activity alters BDNF-TrkB signaling kinetics and downstream functions
    • 24634513,. The Company of Biologists Ltd;;: –
    • Guo W, Ji Y, Wang S, Sun Y, Lu B, Neuronal activity alters BDNF-TrkB signaling kinetics and downstream functions. J Cell Sci. The Company of Biologists Ltd; 2014;127: 2249–2260. doi: 10.1242/jcs.13996424634513
    • (2014) J Cell Sci , vol.127 , pp. 2249-2260
    • Guo, W.1    Ji, Y.2    Wang, S.3    Sun, Y.4    Lu, B.5
  • 57
    • 84899654194 scopus 로고    scopus 로고
    • Twins with hereditary sensory and autonomic neuropathy type IV with preserved periodontal sensation
    • 24631696,..;: –
    • Guven Y, Altunoglu U, Aktoren O, Uyguner ZO, Kayserili H, Kaewkahya M, et al. Twins with hereditary sensory and autonomic neuropathy type IV with preserved periodontal sensation. European Journal of Medical Genetics. 2014;57: 240–246. doi: 10.1016/j.ejmg.2014.02.01424631696
    • (2014) European Journal of Medical Genetics , vol.57 , pp. 240-246
    • Guven, Y.1    Altunoglu, U.2    Aktoren, O.3    Uyguner, Z.O.4    Kayserili, H.5    Kaewkahya, M.6
  • 58
    • 84990879533 scopus 로고    scopus 로고
    • Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder
    • 26485544,.. Nature Publishing Group;;:
    • Wang Y, Zhao X, Ju W, Flory M, Zhong J, Jiang S, et al. Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder. Transl Psychiatry. Nature Publishing Group; 2015;5: e660. doi: 10.1038/tp.2015.14426485544
    • (2015) Transl Psychiatry , vol.5
    • Wang, Y.1    Zhao, X.2    Ju, W.3    Flory, M.4    Zhong, J.5    Jiang, S.6
  • 59
    • 84860353437 scopus 로고    scopus 로고
    • Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation
    • 22446693,.. Nature Publishing Group;;: –
    • Modarresi F, Faghihi MA, Lopez-Toledano MA, Fatemi RP, Magistri M, Brothers SP, et al. Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation. Nat Biotechnol. Nature Publishing Group; 2012;30: 453–459. doi: 10.1038/nbt.215822446693
    • (2012) Nat Biotechnol , vol.30 , pp. 453-459
    • Modarresi, F.1    Faghihi, M.A.2    Lopez-Toledano, M.A.3    Fatemi, R.P.4    Magistri, M.5    Brothers, S.P.6
  • 60
    • 84992490645 scopus 로고    scopus 로고
    • Identification and functional analysis of long non-coding RNAs in human and mouse early embryos based on single-cell transcriptome data
    • Impact Journals;;
    • Qiu J-J, Ren Z-R, Yan J-B, Identification and functional analysis of long non-coding RNAs in human and mouse early embryos based on single-cell transcriptome data. Oncotarget. Impact Journals; 2016;5.
    • (2016) Oncotarget , vol.5
    • Qiu, J.-J.1    Ren, Z.-R.2    Yan, J.-B.3
  • 61
    • 0028109717 scopus 로고
    • GDNF: a potent survival factor for motoneurons present in peripheral nerve and muscle
    • 7973664,..;: –
    • Henderson CE, Phillips HS, Pollock RA, Davies AM, Lemeulle C, Armanini M, et al. GDNF: a potent survival factor for motoneurons present in peripheral nerve and muscle. Science. 1994;266: 1062–1064. 7973664
    • (1994) Science , vol.266 , pp. 1062-1064
    • Henderson, C.E.1    Phillips, H.S.2    Pollock, R.A.3    Davies, A.M.4    Lemeulle, C.5    Armanini, M.6
  • 62
    • 0029007011 scopus 로고
    • Peripheral expression and biological activities of GDNF, a new neurotrophic factor for avian and mammalian peripheral neurons
    • 7790368,.. The Rockefeller University Press;;: –
    • Trupp M, Rydén M, Jörnvall H, Funakoshi H, Timmusk T, Arenas E, et al. Peripheral expression and biological activities of GDNF, a new neurotrophic factor for avian and mammalian peripheral neurons. J Cell Biol. The Rockefeller University Press; 1995;130: 137–148. 7790368
    • (1995) J Cell Biol , vol.130 , pp. 137-148
    • Trupp, M.1    Rydén, M.2    Jörnvall, H.3    Funakoshi, H.4    Timmusk, T.5    Arenas, E.6
  • 63
    • 15844426332 scopus 로고    scopus 로고
    • Defects in enteric innervation and kidney development in mice lacking GDNF
    • 8657307,.. Nature Publishing Group;;: –
    • Pichel JG, Shen L, Sheng HZ, Granholm AC, Drago J, Grinberg A, et al. Defects in enteric innervation and kidney development in mice lacking GDNF. Nature. Nature Publishing Group; 1996;382: 73–76. doi: 10.1038/382073a08657307
    • (1996) Nature , vol.382 , pp. 73-76
    • Pichel, J.G.1    Shen, L.2    Sheng, H.Z.3    Granholm, A.C.4    Drago, J.5    Grinberg, A.6
  • 64
    • 15844384629 scopus 로고    scopus 로고
    • Renal and neuronal abnormalities in mice lacking GDNF
    • 8657308,.. Nature Publishing Group;;: –
    • Moore MW, Klein RD, Fariñas I, Sauer H, Armanini M, Phillips H, et al. Renal and neuronal abnormalities in mice lacking GDNF. Nature. Nature Publishing Group; 1996;382: 76–79. doi: 10.1038/382076a08657308
    • (1996) Nature , vol.382 , pp. 76-79
    • Moore, M.W.1    Klein, R.D.2    Fariñas, I.3    Sauer, H.4    Armanini, M.5    Phillips, H.6
  • 65
    • 84955324600 scopus 로고    scopus 로고
    • NeuroD1 reprograms chromatin and transcription factor landscapes to induce the neuronal program
    • EMBO Press
    • Pataskar A, Jung J, Smialowski P, Noack F, Calegari F, Straub T, et al. NeuroD1 reprograms chromatin and transcription factor landscapes to induce the neuronal program. EMBO J. EMBO Press; 2015;: e201591206.
    • (2015) EMBO J
    • Pataskar, A.1    Jung, J.2    Smialowski, P.3    Noack, F.4    Calegari, F.5    Straub, T.6
  • 66
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: a tool set for whole-genome association and population-based linkage analyses
    • 17701901,..;: –
    • Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet. 2007;81: 559–575. doi: 10.1086/51979517701901
    • (2007) Am J Hum Genet , vol.81 , pp. 559-575
    • Purcell, S.1    Neale, B.2    Todd-Brown, K.3    Thomas, L.4    Ferreira, M.A.R.5    Bender, D.6
  • 67
    • 84897954264 scopus 로고    scopus 로고
    • Efficient multivariate linear mixed model algorithms for genome-wide association studies
    • 24531419,. Nature Research;;: –
    • Zhou X, Stephens M, Efficient multivariate linear mixed model algorithms for genome-wide association studies. Nat Methods. Nature Research; 2014;11: 407–409. doi: 10.1038/nmeth.284824531419
    • (2014) Nat Methods , vol.11 , pp. 407-409
    • Zhou, X.1    Stephens, M.2
  • 68
    • 84863003734 scopus 로고    scopus 로고
    • Genome-wide efficient mixed-model analysis for association studies
    • 22706312,. Nature Research;;: –
    • Zhou X, Stephens M, Genome-wide efficient mixed-model analysis for association studies. Nat Genet. Nature Research; 2012;44: 821–824. doi: 10.1038/ng.231022706312
    • (2012) Nat Genet , vol.44 , pp. 821-824
    • Zhou, X.1    Stephens, M.2
  • 69
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • 22388286,. Nature Publishing Group;;: –
    • Langmead B, Salzberg SL, Fast gapped-read alignment with Bowtie 2. Nat Methods. Nature Publishing Group; 2012;9: 357–359. doi: 10.1038/nmeth.192322388286
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 70
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
    • 20644199,.. Cold Spring Harbor Lab;;: –
    • McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. Cold Spring Harbor Lab; 2010;20: 1297–1303. doi: 10.1101/gr.107524.11020644199
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3    Sivachenko, A.4    Cibulskis, K.5    Kernytsky, A.6
  • 71
    • 0030871285 scopus 로고    scopus 로고
    • A closed tube format for amplification and detection of DNA based on energy transfer
    • 9171107,. Oxford University Press;;: –
    • Nazarenko IA, Bhatnagar SK, Hohman RJ, A closed tube format for amplification and detection of DNA based on energy transfer. Nucleic Acids Res. Oxford University Press; 1997;25: 2516–2521. 9171107
    • (1997) Nucleic Acids Res , vol.25 , pp. 2516-2521
    • Nazarenko, I.A.1    Bhatnagar, S.K.2    Hohman, R.J.3
  • 72
    • 0035154453 scopus 로고    scopus 로고
    • High-throughput SNP genotyping by allele-specific PCR with universal energy-transfer-labeled primers
    • 11156625,. Cold Spring Harbor Laboratory Press;;: –
    • Myakishev MV, Khripin Y, Hu S, Hamer DH, High-throughput SNP genotyping by allele-specific PCR with universal energy-transfer-labeled primers. Genome Res. Cold Spring Harbor Laboratory Press; 2001;11: 163–169. 11156625
    • (2001) Genome Res , vol.11 , pp. 163-169
    • Myakishev, M.V.1    Khripin, Y.2    Hu, S.3    Hamer, D.H.4
  • 74
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • 9521921,.;: –
    • Ewing B, Hillier L, Wendl MC, Green P, Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998;8: 175–185. 9521921
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 75
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • 9521922,.;: –
    • Ewing B, Green P, Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 1998;8: 186–194. 9521922
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 76
    • 43349108713 scopus 로고    scopus 로고
    • .:;;Chapter 11: Unit11.2–11.2.43
    • Gordon D, Viewing and editing assembled sequences using Consed. Curr Protoc Bioinformatics. Hoboken, NJ, USA: John Wiley & Sons, Inc; 2003;Chapter 11: Unit11.2–11.2.43.
    • (2003) Curr Protoc Bioinformatics
    • Gordon, D.1
  • 77
    • 84859885816 scopus 로고    scopus 로고
    • Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
    • 22383036,.. Nature Publishing Group;;: –
    • Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. Nature Publishing Group; 2012;7: 562–578. doi: 10.1038/nprot.2012.01622383036
    • (2012) Nat Protoc , vol.7 , pp. 562-578
    • Trapnell, C.1    Roberts, A.2    Goff, L.3    Pertea, G.4    Kim, D.5    Kelley, D.R.6
  • 78
    • 84928987900 scopus 로고    scopus 로고
    • HTSeq—a Python framework to work with high-throughput sequencing data
    • 25260700,. Oxford University Press;;: –
    • Anders S, Pyl PT, Huber W, HTSeq—a Python framework to work with high-throughput sequencing data. Bioinformatics. Oxford University Press; 2015;31: 166–169. doi: 10.1093/bioinformatics/btu63825260700
    • (2015) Bioinformatics , vol.31 , pp. 166-169
    • Anders, S.1    Pyl, P.T.2    Huber, W.3
  • 79
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • 19910308,. Oxford University Press;;: –
    • Robinson MD, McCarthy DJ, Smyth GK, edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. Oxford University Press; 2010;26: 139–140. doi: 10.1093/bioinformatics/btp61619910308
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 80
    • 79957842166 scopus 로고    scopus 로고
    • Computational methods for transcriptome annotation and quantification using RNA-seq
    • 21623353,.;: –
    • Garber M, Grabherr MG, Guttman M, Trapnell C, Computational methods for transcriptome annotation and quantification using RNA-seq. Nat Methods. 2011;8: 469–477. doi: 10.1038/nmeth.161321623353
    • (2011) Nat Methods , vol.8 , pp. 469-477
    • Garber, M.1    Grabherr, M.G.2    Guttman, M.3    Trapnell, C.4
  • 81
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • 11846609,. Academic Press;;: –
    • Livak KJ, Schmittgen TD, Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods. Academic Press; 2001;25: 402–408. doi: 10.1006/meth.2001.126211846609
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 82
    • 79953319002 scopus 로고    scopus 로고
    • Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers
    • 21233399,.. Cold Spring Harbor Lab;;: –
    • Sérandour AA, Avner S, Percevault F, Demay F, Bizot M, Lucchetti-Miganeh C, et al. Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers. Genome Res. Cold Spring Harbor Lab; 2011;21: 555–565. doi: 10.1101/gr.111534.11021233399
    • (2011) Genome Res , vol.21 , pp. 555-565
    • Sérandour, A.A.1    Avner, S.2    Percevault, F.3    Demay, F.4    Bizot, M.5    Lucchetti-Miganeh, C.6
  • 83
    • 0021100690 scopus 로고
    • Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
    • 6828386,. Oxford University Press;;: –
    • Dignam JD, Lebovitz RM, Roeder RG, Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. Oxford University Press; 1983;11: 1475–1489. 6828386
    • (1983) Nucleic Acids Res , vol.11 , pp. 1475-1489
    • Dignam, J.D.1    Lebovitz, R.M.2    Roeder, R.G.3


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