-
1
-
-
84856750425
-
Human pre-implantation embryo development
-
Niakan KK, Han J, Pedersen RA, Simon C, Pera RAR. Human pre-implantation embryo development. Development. 2012; 139:829-841.
-
(2012)
Development
, vol.139
, pp. 829-841
-
-
Niakan, K.K.1
Han, J.2
Pedersen, R.A.3
Simon, C.4
Pera, R.A.R.5
-
5
-
-
84866326826
-
Embryonic stem cell miRNAs and their roles in development and disease
-
Alves Vidigal J, Ventura A. Embryonic stem cell miRNAs and their roles in development and disease. Semin Cancer Biol. 2012; 22:428-436.
-
(2012)
Semin Cancer Biol
, vol.22
, pp. 428-436
-
-
Alves Vidigal, J.1
Ventura, A.2
-
6
-
-
84885971573
-
The long non-coding RNAFendrr links epigenetic control mechanisms to gene regulatory networks in mammalian embryogenesis
-
Grote P, Herrmann BG. The long non-coding RNAFendrr links epigenetic control mechanisms to gene regulatory networks in mammalian embryogenesis. Rna Biol. 2014; 10:1579-1585.
-
(2014)
Rna Biol
, vol.10
, pp. 1579-1585
-
-
Grote, P.1
Herrmann, B.G.2
-
7
-
-
0347357614
-
Inheritance of a pre-inactivated paternal X chromosome in early mouse embryos
-
Huynh KD, Lee JT. Inheritance of a pre-inactivated paternal X chromosome in early mouse embryos. Nature. 2003; 426:857-862.
-
(2003)
Nature
, vol.426
, pp. 857-862
-
-
Huynh, K.D.1
Lee, J.T.2
-
8
-
-
27844503601
-
Evidence for de novo imprinted X-chromosome inactivation independent of meiotic inactivation in mice
-
Okamoto I, Arnaud D, Le Baccon P, Otte AP, Disteche CM, Avner P, Heard E. Evidence for de novo imprinted X-chromosome inactivation independent of meiotic inactivation in mice. Nature. 2005; 438:369-373.
-
(2005)
Nature
, vol.438
, pp. 369-373
-
-
Okamoto, I.1
Arnaud, D.2
Le Baccon, P.3
Otte, A.P.4
Disteche, C.M.5
Avner, P.6
Heard, E.7
-
9
-
-
84921980968
-
Functional analysis of long noncoding RNAs in development and disease
-
Chen LL, Zhao JC. Functional analysis of long noncoding RNAs in development and disease. Adv Exp Med Biol. 2014; 825:129-158.
-
(2014)
Adv Exp Med Biol
, vol.825
, pp. 129-158
-
-
Chen, L.L.1
Zhao, J.C.2
-
10
-
-
84864917692
-
The SNORD115 (H/MBII-52) and SNORD116 (H/MBII-85) gene clusters at the imprinted Prader-Willi locus generate canonical box C/D snoRNAs
-
Bortolin-Cavaille ML, Cavaille J. The SNORD115 (H/MBII-52) and SNORD116 (H/MBII-85) gene clusters at the imprinted Prader-Willi locus generate canonical box C/D snoRNAs. Nucleic Acids Res. 2012; 40:6800-6807.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 6800-6807
-
-
Bortolin-Cavaille, M.L.1
Cavaille, J.2
-
11
-
-
62849117124
-
Determination of KCNQ1OT1 and H19 methylation levels in BWS and SRS patients using methylation-sensitive high-resolution melting analysis
-
Alders M, Bliek J, Vd Lip K, Vd Bogaard R, Mannens M. Determination of KCNQ1OT1 and H19 methylation levels in BWS and SRS patients using methylation-sensitive high-resolution melting analysis. Eur J Hum Genet. 2008; 17:467-473.
-
(2008)
Eur J Hum Genet
, vol.17
, pp. 467-473
-
-
Alders, M.1
Bliek, J.2
Vd Lip, K.3
Vd Bogaard, R.4
Mannens, M.5
-
12
-
-
84857836107
-
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
-
Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF. Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis. Genome Res. 2012; 22:577-591.
-
(2012)
Genome Res
, vol.22
, pp. 577-591
-
-
Pauli, A.1
Valen, E.2
Lin, M.F.3
Garber, M.4
Vastenhouw, N.L.5
Levin, J.Z.6
Fan, L.7
Sandelin, A.8
Rinn, J.L.9
Regev, A.10
Schier, A.F.11
-
13
-
-
84915750294
-
Exploring the function of long noncoding RNA in the development of bovine early embryos
-
Caballero J, Gilbert I, Fournier E, Gagn D, Scantland S, Macaulay A, Robert C. Exploring the function of long noncoding RNA in the development of bovine early embryos. Reproduction, Fertility and Development. 2015; 27:40.
-
(2015)
Reproduction, Fertility and Development
, vol.27
, pp. 40
-
-
Caballero, J.1
Gilbert, I.2
Fournier, E.3
Gagn, D.4
Scantland, S.5
Macaulay, A.6
Robert, C.7
-
14
-
-
84928029167
-
Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved
-
Nitsche A, Rose D, Fasold M, Reiche K, Stadler PF. Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved. RNA. 2015; 21:801-812.
-
(2015)
RNA
, vol.21
, pp. 801-812
-
-
Nitsche, A.1
Rose, D.2
Fasold, M.3
Reiche, K.4
Stadler, P.F.5
-
15
-
-
84883134780
-
Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing
-
Xue Z, Huang K, Cai C, Cai L, Jiang C, Feng Y, Liu Z, Zeng Q, Cheng L, Sun YE, Liu J, Horvath S, Fan G. Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing. Nature. 2013; 500:593-597.
-
(2013)
Nature
, vol.500
, pp. 593-597
-
-
Xue, Z.1
Huang, K.2
Cai, C.3
Cai, L.4
Jiang, C.5
Feng, Y.6
Liu, Z.7
Zeng, Q.8
Cheng, L.9
Sun, Y.E.10
Liu, J.11
Horvath, S.12
Fan, G.13
-
16
-
-
84883743509
-
Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells
-
Yan L, Yang M, Guo H, Yang L, Wu J, Li R, Liu P, Lian Y, Zheng X, Yan J, Huang J, Li M, Wu X, et al. Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells. Nat Struct Mol Biol. 2013; 20:1131-1139.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 1131-1139
-
-
Yan, L.1
Yang, M.2
Guo, H.3
Yang, L.4
Wu, J.5
Li, R.6
Liu, P.7
Lian, Y.8
Zheng, X.9
Yan, J.10
Huang, J.11
Li, M.12
Wu, X.13
-
17
-
-
84988888897
-
Identification and functional analysis of long non-coding RNAs in mouse cleavage stage embryonic development based on single cell transcriptome data
-
Zhang K, Huang K, Luo Y, Li S. Identification and functional analysis of long non-coding RNAs in mouse cleavage stage embryonic development based on single cell transcriptome data. Bmc Genomics. 2014; 15:845.
-
(2014)
Bmc Genomics
, vol.15
, pp. 845
-
-
Zhang, K.1
Huang, K.2
Luo, Y.3
Li, S.4
-
18
-
-
70149123708
-
Genomic and Transcriptional Co-Localization of Protein-Coding and Long Non-Coding RNA Pairs in the Developing Brain
-
Ponjavic J, Oliver PL, Lunter G, Ponting CP. Genomic and Transcriptional Co-Localization of Protein-Coding and Long Non-Coding RNA Pairs in the Developing Brain. Plos Genet. 2009; 5:e1000617.
-
(2009)
Plos Genet
, vol.5
-
-
Ponjavic, J.1
Oliver, P.L.2
Lunter, G.3
Ponting, C.P.4
-
19
-
-
77957243921
-
Long Noncoding RNAs with Enhancer-like Function in Human Cells
-
Ørom UA, Derrien T, Beringer M, Gumireddy K, Gardini A, Bussotti G, Lai F, Zytnicki M, Notredame C, Huang Q, Guigo R, Shiekhattar R. Long Noncoding RNAs with Enhancer-like Function in Human Cells. Cell. 2010; 143:46-58.
-
(2010)
Cell
, vol.143
, pp. 46-58
-
-
Ørom, U.A.1
Derrien, T.2
Beringer, M.3
Gumireddy, K.4
Gardini, A.5
Bussotti, G.6
Lai, F.7
Zytnicki, M.8
Notredame, C.9
Huang, Q.10
Guigo, R.11
Shiekhattar, R.12
-
21
-
-
48849116957
-
Aurora kinase A controls meiosis I progression in mouse oocytes
-
Saskova A, Solc P, Baran V, Kubelka M, Schultz RM, Motlik J. Aurora kinase A controls meiosis I progression in mouse oocytes. Cell Cycle. 2008; 7:2368-2376.
-
(2008)
Cell Cycle
, vol.7
, pp. 2368-2376
-
-
Saskova, A.1
Solc, P.2
Baran, V.3
Kubelka, M.4
Schultz, R.M.5
Motlik, J.6
-
22
-
-
69849115375
-
Role of Bcl2-like 10 (Bcl2l10) in Regulating Mouse Oocyte Maturation
-
Yoon SJ, Kim EY, Kim YS, Lee HS, Kim KH, Bae J, Lee KA. Role of Bcl2-like 10 (Bcl2l10) in Regulating Mouse Oocyte Maturation. Biol Reprod. 2009; 81:497-506.
-
(2009)
Biol Reprod
, vol.81
, pp. 497-506
-
-
Yoon, S.J.1
Kim, E.Y.2
Kim, Y.S.3
Lee, H.S.4
Kim, K.H.5
Bae, J.6
Lee, K.A.7
-
23
-
-
33745845526
-
The human cumulus-oocyte complex geneexpression profile
-
Assou S. The human cumulus-oocyte complex geneexpression profile. Hum Reprod. 2006; 21:1705-1719.
-
(2006)
Hum Reprod
, vol.21
, pp. 1705-1719
-
-
Assou, S.1
-
24
-
-
84939475724
-
CRL4-DCAF1 ubiquitin E3 ligase directs protein phosphatase 2A degradation to control oocyte meiotic maturation
-
Yu C, Ji S, Sha Q, Sun Q, Fan H. CRL4-DCAF1 ubiquitin E3 ligase directs protein phosphatase 2A degradation to control oocyte meiotic maturation. Nat Commun. 2015; 6:8017.
-
(2015)
Nat Commun
, vol.6
, pp. 8017
-
-
Yu, C.1
Ji, S.2
Sha, Q.3
Sun, Q.4
Fan, H.5
-
25
-
-
4344714017
-
Ubiquitin-proteasome pathway modulates mouse oocyte meiotic maturation and fertilization via regulation of MAPK cascade and cyclin B1 degradation
-
Huo L, Fan H, Zhong Z, Chen D, Schatten H, Sun Q. Ubiquitin-proteasome pathway modulates mouse oocyte meiotic maturation and fertilization via regulation of MAPK cascade and cyclin B1 degradation. Mech Develop. 2004; 121:1275-1287.
-
(2004)
Mech Develop
, vol.121
, pp. 1275-1287
-
-
Huo, L.1
Fan, H.2
Zhong, Z.3
Chen, D.4
Schatten, H.5
Sun, Q.6
-
26
-
-
84876690020
-
Chromatin-linked determinants of zygotic genome activation
-
Østrup O, Andersen IS, Collas P. Chromatin-linked determinants of zygotic genome activation. Cell Mol Life Sci. 2013; 70:1425-1437.
-
(2013)
Cell Mol Life Sci
, vol.70
, pp. 1425-1437
-
-
Østrup, O.1
Andersen, I.S.2
Collas, P.3
-
27
-
-
79961207245
-
Mitochondrial function in the human oocyte and embryo and their role in developmental competence
-
Van Blerkom J. Mitochondrial function in the human oocyte and embryo and their role in developmental competence. Mitochondrion. 2011; 11:797-813.
-
(2011)
Mitochondrion
, vol.11
, pp. 797-813
-
-
Van Blerkom, J.1
-
28
-
-
84892515589
-
The Role of Mitochondria from Mature Oocyte to Viable Blastocyst
-
Chappel S. The Role of Mitochondria from Mature Oocyte to Viable Blastocyst. Obstetrics and Gynecology International. 2013; 2013:1-10.
-
(2013)
Obstetrics and Gynecology International
, vol.2013
, pp. 1-10
-
-
Chappel, S.1
-
29
-
-
84964312706
-
MitoCOGs: clusters of orthologous genes from mitochondria and implications for the evolution of eukaryotes
-
Kannan S, Rogozin IB, Koonin EV. MitoCOGs: clusters of orthologous genes from mitochondria and implications for the evolution of eukaryotes. Bmc Evol Biol. 2014; 14:237.
-
(2014)
Bmc Evol Biol
, vol.14
, pp. 237
-
-
Kannan, S.1
Rogozin, I.B.2
Koonin, E.V.3
-
30
-
-
84876474319
-
Genetic syndromes caused by mutations in epigenetic genes
-
Berdasco M, Esteller M. Genetic syndromes caused by mutations in epigenetic genes. Hum Genet. 2013; 132:359-383.
-
(2013)
Hum Genet
, vol.132
, pp. 359-383
-
-
Berdasco, M.1
Esteller, M.2
-
31
-
-
4344714017
-
Ubiquitin-proteasome pathway modulates mouse oocyte meiotic maturation and fertilization via regulation of MAPK cascade and cyclin B1 degradation
-
Huo LJ, Fan HY, Zhong ZS, Chen DY, Schatten H, Sun QY. Ubiquitin-proteasome pathway modulates mouse oocyte meiotic maturation and fertilization via regulation of MAPK cascade and cyclin B1 degradation. Mech Dev. 2004; 121:1275-1287.
-
(2004)
Mech Dev
, vol.121
, pp. 1275-1287
-
-
Huo, L.J.1
Fan, H.Y.2
Zhong, Z.S.3
Chen, D.Y.4
Schatten, H.5
Sun, Q.Y.6
-
32
-
-
78650212700
-
Oocyte maturation failure: a syndrome of bad eggs
-
Beall S, Brenner C, Segars J. Oocyte maturation failure: a syndrome of bad eggs. Fertil Steril. 2010; 94:2507-2513.
-
(2010)
Fertil Steril
, vol.94
, pp. 2507-2513
-
-
Beall, S.1
Brenner, C.2
Segars, J.3
-
33
-
-
84942109246
-
Control of Chromatin Structure by Long Noncoding RNA
-
Bohmdorfer G, Wierzbicki AT. Control of Chromatin Structure by Long Noncoding RNA. Trends Cell Biol. 2015; 25:623-632.
-
(2015)
Trends Cell Biol
, vol.25
, pp. 623-632
-
-
Bohmdorfer, G.1
Wierzbicki, A.T.2
-
34
-
-
84927631892
-
Non-coding RNA derived from the region adjacent to the human HO-1 E2 enhancer selectively regulates HO-1 gene induction by modulating Pol II binding
-
Maruyama A, Mimura J, Itoh K. Non-coding RNA derived from the region adjacent to the human HO-1 E2 enhancer selectively regulates HO-1 gene induction by modulating Pol II binding. Nucleic Acids Res. 2014; 42:13599-13614.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 13599-13614
-
-
Maruyama, A.1
Mimura, J.2
Itoh, K.3
-
35
-
-
84887122461
-
The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex
-
Prensner JR, Iyer MK, Sahu A, Asangani IA, Cao Q, Patel L, Vergara IA, Davicioni E, Erho N, Ghadessi M, Jenkins RB, Triche TJ, Malik R, et al. The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex. Nat Genet. 2013; 45:1392-1398.
-
(2013)
Nat Genet
, vol.45
, pp. 1392-1398
-
-
Prensner, J.R.1
Iyer, M.K.2
Sahu, A.3
Asangani, I.A.4
Cao, Q.5
Patel, L.6
Vergara, I.A.7
Davicioni, E.8
Erho, N.9
Ghadessi, M.10
Jenkins, R.B.11
Triche, T.J.12
Malik, R.13
-
36
-
-
84883134780
-
Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing
-
Xue Z, Huang K, Cai C, Cai L, Jiang C, Feng Y, Liu Z, Zeng Q, Cheng L, Sun YE, Liu J, Horvath S, Fan G. Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing. Nature. 2013; 500:593-597.
-
(2013)
Nature
, vol.500
, pp. 593-597
-
-
Xue, Z.1
Huang, K.2
Cai, C.3
Cai, L.4
Jiang, C.5
Feng, Y.6
Liu, Z.7
Zeng, Q.8
Cheng, L.9
Sun, Y.E.10
Liu, J.11
Horvath, S.12
Fan, G.13
-
37
-
-
84926519013
-
HISAT: a fast spliced aligner with low memory requirements
-
Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nat Methods. 2015; 12:357-360.
-
(2015)
Nat Methods
, vol.12
, pp. 357-360
-
-
Kim, D.1
Langmead, B.2
Salzberg, S.L.3
-
38
-
-
84881517857
-
Comprehensive characterization of 10,571 mouse large intergenic noncoding RNAs from whole transcriptome sequencing
-
Luo H, Sun S, Li P, Bu D, Cao H, Zhao Y. Comprehensive characterization of 10,571 mouse large intergenic noncoding RNAs from whole transcriptome sequencing. Plos One. 2013; 8:e70835.
-
(2013)
Plos One
, vol.8
-
-
Luo, H.1
Sun, S.2
Li, P.3
Bu, D.4
Cao, H.5
Zhao, Y.6
-
39
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010; 28:511-515.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
40
-
-
77952148742
-
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
-
Guttman M, Garber M, Levin JZ, Donaghey J, Robinson J, Adiconis X, Fan L, Koziol MJ, Gnirke A, Nusbaum C, Rinn JL, Lander ES, Regev A. Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat Biotechnol. 2010; 28:503-510.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 503-510
-
-
Guttman, M.1
Garber, M.2
Levin, J.Z.3
Donaghey, J.4
Robinson, J.5
Adiconis, X.6
Fan, L.7
Koziol, M.J.8
Gnirke, A.9
Nusbaum, C.10
Rinn, J.L.11
Lander, E.S.12
Regev, A.13
-
41
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Gene Dev. 2011; 25:1915-1927.
-
(2011)
Gene Dev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
Koziol, M.4
Tazon-Vega, B.5
Regev, A.6
Rinn, J.L.7
-
42
-
-
79952709519
-
pROC: an open-source package for R and S+ to analyze and compare ROC curves
-
Robin X, Turck N, Hainard A, Tiberti N, Lisacek F, Sanchez J, Müller M. pROC: an open-source package for R and S+ to analyze and compare ROC curves. Bmc Bioinformatics. 2011; 12:77.
-
(2011)
Bmc Bioinformatics
, vol.12
, pp. 77
-
-
Robin, X.1
Turck, N.2
Hainard, A.3
Tiberti, N.4
Lisacek, F.5
Sanchez, J.6
Müller, M.7
-
43
-
-
84870899078
-
Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study
-
Sun L, Zhang Z, Bailey TL, Perkins AC, Tallack MR, Xu Z, Liu H. Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study. Bmc Bioinformatics. 2012; 13:331.
-
(2012)
Bmc Bioinformatics
, vol.13
, pp. 331
-
-
Sun, L.1
Zhang, Z.2
Bailey, T.L.3
Perkins, A.C.4
Tallack, M.R.5
Xu, Z.6
Liu, H.7
-
44
-
-
84925286713
-
Exploring the stability of long intergenic non-coding RNA in K562 cells by comparative studies of RNA-Seq datasets
-
Wang L, Zhou D, Tu J, Wang Y, Lu Z. Exploring the stability of long intergenic non-coding RNA in K562 cells by comparative studies of RNA-Seq datasets. Biol Direct. 2014; 9:15.
-
(2014)
Biol Direct
, vol.9
, pp. 15
-
-
Wang, L.1
Zhou, D.2
Tu, J.3
Wang, Y.4
Lu, Z.5
-
45
-
-
84891798006
-
NONCODEv4: exploring the world of long non-coding RNA genes
-
Xie C, Yuan J, Li H, Li M, Zhao G, Bu D, Zhu W, Wu W, Chen R, Zhao Y. NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Res. 2013; 42:D98-D103.
-
(2013)
Nucleic Acids Res
, vol.42
, pp. D98-D103
-
-
Xie, C.1
Yuan, J.2
Li, H.3
Li, M.4
Zhao, G.5
Bu, D.6
Zhu, W.7
Wu, W.8
Chen, R.9
Zhao, Y.10
-
46
-
-
84946037477
-
Ensembl 2015
-
Cunningham F, Amode MR, Barrell D, Beal K, Billis K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fitzgerald S, Gil L, Giron CG, Gordon L, et al. Ensembl 2015 Nucleic Acids Res. 2015; 43:D662-D669.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D662-D669
-
-
Cunningham, F.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Billis, K.5
Brent, S.6
Carvalho-Silva, D.7
Clapham, P.8
Coates, G.9
Fitzgerald, S.10
Gil, L.11
Giron, C.G.12
Gordon, L.13
-
47
-
-
84946100079
-
The UCSC Genome Browser database: 2015 update
-
Rosenbloom KR, Armstrong J, Barber GP, Casper J, Clawson H, Diekhans M, Dreszer TR, Fujita PA, Guruvadoo L, Haeussler M, Harte RA, Heitner S, Hickey G, et al. The UCSC Genome Browser database: 2015 update. Nucleic Acids Res. 2015; 43:D670-D681.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D670-D681
-
-
Rosenbloom, K.R.1
Armstrong, J.2
Barber, G.P.3
Casper, J.4
Clawson, H.5
Diekhans, M.6
Dreszer, T.R.7
Fujita, P.A.8
Guruvadoo, L.9
Haeussler, M.10
Harte, R.A.11
Heitner, S.12
Hickey, G.13
-
48
-
-
33846057724
-
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt KD, Tatusova T, Maglott DR. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 2007; 35:D61-D65.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. D61-D65
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
49
-
-
84865760395
-
GENCODE: The reference human genome annotation for The ENCODE Project
-
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S, Barnes I, Bignell A, Boychenko V, et al. GENCODE: The reference human genome annotation for The ENCODE Project. Genome Res. 2012; 22:1760-1774.
-
(2012)
Genome Res
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.M.3
Tapanari, E.4
Diekhans, M.5
Kokocinski, F.6
Aken, B.L.7
Barrell, D.8
Zadissa, A.9
Searle, S.10
Barnes, I.11
Bignell, A.12
Boychenko, V.13
-
50
-
-
77951770756
-
BEDTools: a flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010; 26:841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
51
-
-
84876020023
-
CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model
-
Wang L, Park HJ, Dasari S, Wang S, Kocher JP, Li W. CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model. Nucleic Acids Res. 2013; 41:e74.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Wang, L.1
Park, H.J.2
Dasari, S.3
Wang, S.4
Kocher, J.P.5
Li, W.6
-
52
-
-
34547582418
-
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
-
Kong L, Zhang Y, Ye ZQ, Liu XQ, Zhao SQ, Wei L, Gao G. CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res. 2007; 35:W345-W349.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W345-W349
-
-
Kong, L.1
Zhang, Y.2
Ye, Z.Q.3
Liu, X.Q.4
Zhao, S.Q.5
Wei, L.6
Gao, G.7
-
53
-
-
84877357792
-
iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data
-
Sun K, Chen X, Jiang P, Song X, Wang H, Sun H. iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data. BMC Genomics. 2013; 14:S7.
-
(2013)
BMC Genomics
, vol.14
, pp. S7
-
-
Sun, K.1
Chen, X.2
Jiang, P.3
Song, X.4
Wang, H.5
Sun, H.6
-
54
-
-
84908133238
-
PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme
-
Li A, Zhang J, Zhou Z. PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme. Bmc Bioinformatics. 2014; 15:311.
-
(2014)
Bmc Bioinformatics
, vol.15
, pp. 311
-
-
Li, A.1
Zhang, J.2
Zhou, Z.3
-
55
-
-
84900873950
-
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
-
Trapnell C, Cacchiarelli D, Grimsby J, Pokharel P, Li S, Morse M, Lennon NJ, Livak KJ, Mikkelsen TS, Rinn JL. The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nat Biotechnol. 2014; 32:381-386.
-
(2014)
Nat Biotechnol
, vol.32
, pp. 381-386
-
-
Trapnell, C.1
Cacchiarelli, D.2
Grimsby, J.3
Pokharel, P.4
Li, S.5
Morse, M.6
Lennon, N.J.7
Livak, K.J.8
Mikkelsen, T.S.9
Rinn, J.L.10
-
56
-
-
0347135948
-
An Abundance of Bidirectional Promoters in the Human Genome
-
Trinklein ND. An Abundance of Bidirectional Promoters in the Human Genome. Genome Res. 2003; 14:62-66.
-
(2003)
Genome Res
, vol.14
, pp. 62-66
-
-
Trinklein, N.D.1
-
57
-
-
60549111634
-
WGCNA: an R package for weighted correlation network analysis
-
Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. Bmc Bioinformatics. 2008; 9:559.
-
(2008)
Bmc Bioinformatics
, vol.9
, pp. 559
-
-
Langfelder, P.1
Horvath, S.2
-
58
-
-
84883576667
-
VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies
-
Hu Z, Chang YC, Wang Y, Huang CL, Liu Y, Tian F, Granger B, DeLisi C. VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies. Nucleic Acids Res. 2013; 41:W225-W231.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. W225-W231
-
-
Hu, Z.1
Chang, Y.C.2
Wang, Y.3
Huang, C.L.4
Liu, Y.5
Tian, F.6
Granger, B.7
DeLisi, C.8
-
59
-
-
84941783888
-
LncTar: a tool for predicting the RNA targets of long noncoding RNAs
-
Li J, Ma W, Zeng P, Wang J, Geng B, Yang J, Cui Q. LncTar: a tool for predicting the RNA targets of long noncoding RNAs. Brief Bioinform. 2015; 16:806-812.
-
(2015)
Brief Bioinform
, vol.16
, pp. 806-812
-
-
Li, J.1
Ma, W.2
Zeng, P.3
Wang, J.4
Geng, B.5
Yang, J.6
Cui, Q.7
-
60
-
-
84859727275
-
The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse
-
Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE. The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse. Nucleic Acids Res. 2011; 40:D881-D886.
-
(2011)
Nucleic Acids Res
, vol.40
, pp. D881-D886
-
-
Eppig, J.T.1
Blake, J.A.2
Bult, C.J.3
Kadin, J.A.4
Richardson, J.E.5
-
62
-
-
33846689706
-
Using GOstats to test gene lists for GO term association
-
Falcon S, Gentleman R. Using GOstats to test gene lists for GO term association. Bioinformatics. 2007; 23:257-258.
-
(2007)
Bioinformatics
, vol.23
, pp. 257-258
-
-
Falcon, S.1
Gentleman, R.2
|