메뉴 건너뛰기




Volumn 126, Issue 12, 2016, Pages 4690-4701

MHC class I-associated peptides derive from selective regions of the human genome

Author keywords

[No Author keywords available]

Indexed keywords

HLA A ANTIGEN; HLA B ANTIGEN; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; PEPTIDE;

EID: 85002953687     PISSN: 00219738     EISSN: 15588238     Source Type: Journal    
DOI: 10.1172/JCI88590     Document Type: Article
Times cited : (150)

References (81)
  • 3
    • 84906241799 scopus 로고    scopus 로고
    • Insights into the initiation of TCR signaling
    • Chakraborty AK, Weiss A. Insights into the initiation of TCR signaling. Nat Immunol. 2014;15(9):798-807.
    • (2014) Nat Immunol. , vol.15 , Issue.9 , pp. 798-807
    • Chakraborty, A.K.1    Weiss, A.2
  • 4
    • 84880360732 scopus 로고    scopus 로고
    • Quorum sensing allows T cells to discriminate between self and nonself
    • Butler TC, Kardar M, Chakraborty AK. Quorum sensing allows T cells to discriminate between self and nonself. Proc Natl Acad Sci USA. 2013;110(29):11833-11838.
    • (2013) Proc Natl Acad Sci USA. , vol.110 , Issue.29 , pp. 11833-11838
    • Butler, T.C.1    Kardar, M.2    Chakraborty, A.K.3
  • 5
    • 80053392157 scopus 로고    scopus 로고
    • The MHC i immunopeptidome conveys to the cell surface an integrative view of cellular regulation
    • Caron E, et al. The MHC I immunopeptidome conveys to the cell surface an integrative view of cellular regulation. Mol Syst Biol. 2011;7:533.
    • (2011) Mol Syst Biol. , vol.7 , pp. 533
    • Caron, E.1
  • 6
    • 84907308588 scopus 로고    scopus 로고
    • Revisiting thymic positive selection and the mature T cell repertoire for antigen
    • Vrisekoop N, Monteiro JP, Mandl JN, Germain RN. Revisiting thymic positive selection and the mature T cell repertoire for antigen. Immunity. 2014;41(2):181-190.
    • (2014) Immunity. , vol.41 , Issue.2 , pp. 181-190
    • Vrisekoop, N.1    Monteiro, J.P.2    Mandl, J.N.3    Germain, R.N.4
  • 7
    • 0346521283 scopus 로고    scopus 로고
    • Making sense of mass destruction: Quantitating MHC class i antigen presentation
    • Yewdell JW, Reits E, Neefjes J. Making sense of mass destruction: quantitating MHC class I antigen presentation. Nat Rev Immunol. 2003;3(12):952-961.
    • (2003) Nat Rev Immunol. , vol.3 , Issue.12 , pp. 952-961
    • Yewdell, J.W.1    Reits, E.2    Neefjes, J.3
  • 8
    • 34247146913 scopus 로고    scopus 로고
    • The final touches make perfect the peptide-MHC class i repertoire
    • Hammer GE, Kanaseki T, Shastri N. The final touches make perfect the peptide-MHC class I repertoire. Immunity. 2007;26(4):397-406.
    • (2007) Immunity. , vol.26 , Issue.4 , pp. 397-406
    • Hammer, G.E.1    Kanaseki, T.2    Shastri, N.3
  • 10
    • 84904076057 scopus 로고    scopus 로고
    • Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions
    • Kim Y, Sidney J, Buus S, Sette A, Nielsen M, Peters B. Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions. BMC Bioinfor-matics. 2014;15:241.
    • (2014) BMC Bioinfor-matics. , vol.15 , pp. 241
    • Kim, Y.1    Sidney, J.2    Buus, S.3    Sette, A.4    Nielsen, M.5    Peters, B.6
  • 12
    • 34247585533 scopus 로고    scopus 로고
    • Rethinking peptide supply to MHC class i molecules
    • Eisenlohr LC, Huang L, Golovina TN. Rethinking peptide supply to MHC class I molecules. Nat Rev Immunol. 2007;7(5):403-410.
    • (2007) Nat Rev Immunol. , vol.7 , Issue.5 , pp. 403-410
    • Eisenlohr, L.C.1    Huang, L.2    Golovina, T.N.3
  • 13
    • 84857065362 scopus 로고    scopus 로고
    • Proteasome subtypes and the processing of tumor antigens: Increasing antigenic diversity
    • Vigneron N, Van den Eynde BJ. Proteasome subtypes and the processing of tumor antigens: increasing antigenic diversity. Curr Opin Immunol. 2012;24(1):84-91.
    • (2012) Curr Opin Immunol. , vol.24 , Issue.1 , pp. 84-91
    • Vigneron, N.1    Van Den Eynde, B.J.2
  • 16
    • 84898771549 scopus 로고    scopus 로고
    • Cryptic MHC class I-binding peptides are revealed by aminoglycoside-induced stop codon read-through into the 3' UTR
    • Goodenough E, et al. Cryptic MHC class I-binding peptides are revealed by aminoglycoside-induced stop codon read-through into the 3' UTR. Proc Natl Acad Sci USA. 2014;111(15):5670-5675.
    • (2014) Proc Natl Acad Sci USA. , vol.111 , Issue.15 , pp. 5670-5675
    • Goodenough, E.1
  • 17
    • 84899883247 scopus 로고    scopus 로고
    • Translating DRiPs: MHC class i immunosurveillance of pathogens and tumors
    • Antón LC, Yewdell JW. Translating DRiPs: MHC class I immunosurveillance of pathogens and tumors. J Leukoc Biol. 2014;95(4):551-562.
    • (2014) J Leukoc Biol. , vol.95 , Issue.4 , pp. 551-562
    • Antón, L.C.1    Yewdell, J.W.2
  • 18
    • 84887046208 scopus 로고    scopus 로고
    • Translation of pre-spliced RNAs in the nuclear compartment generates peptides for the MHC class i pathway
    • Apcher S, Millot G, Daskalogianni C, Scherl A, Manoury B, Fåhraeus R. Translation of pre-spliced RNAs in the nuclear compartment generates peptides for the MHC class I pathway. Proc Natl Acad Sci USA. 2013;110(44):17951-17956.
    • (2013) Proc Natl Acad Sci USA. , vol.110 , Issue.44 , pp. 17951-17956
    • Apcher, S.1    Millot, G.2    Daskalogianni, C.3    Scherl, A.4    Manoury, B.5    Fåhraeus, R.6
  • 19
    • 84863509993 scopus 로고    scopus 로고
    • MHC I-associated pep-tides preferentially derive from transcripts bearing miRNA response elements
    • Granados DP, et al. MHC I-associated pep-tides preferentially derive from transcripts bearing miRNA response elements. Blood. 2012;119(26):e181-e191.
    • (2012) Blood. , vol.119 , Issue.26 , pp. e181-e191
    • Granados, D.P.1
  • 20
    • 84953260622 scopus 로고    scopus 로고
    • Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames
    • Laumont CM, et al. Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames. Nat Commun. 2016;7:10238.
    • (2016) Nat Commun. , vol.7 , pp. 10238
    • Laumont, C.M.1
  • 21
    • 84937432590 scopus 로고    scopus 로고
    • An open-source computational and data resource to analyze digital maps of immunopeptidomes
    • Caron E, et al. An open-source computational and data resource to analyze digital maps of immunopeptidomes. Elife. 2015;4:e07661.
    • (2015) Elife. , vol.4 , pp. e07661
    • Caron, E.1
  • 22
    • 1342324680 scopus 로고    scopus 로고
    • Toward a definition of self: Proteomic evaluation of the class i peptide repertoire
    • Hickman HD, et al. Toward a definition of self: proteomic evaluation of the class I peptide repertoire. J Immunol. 2004;172(5):2944-2952.
    • (2004) J Immunol. , vol.172 , Issue.5 , pp. 2944-2952
    • Hickman, H.D.1
  • 23
    • 79958769266 scopus 로고    scopus 로고
    • Insights into MHC class i antigen processing gained from large-scale analysis of class i ligands
    • Mester G, Hoffmann V, Stevanovic S. Insights into MHC class I antigen processing gained from large-scale analysis of class I ligands. Cell Mol Life Sci. 2011;68(9):1521-1532.
    • (2011) Cell Mol Life Sci. , vol.68 , Issue.9 , pp. 1521-1532
    • Mester, G.1    Hoffmann, V.2    Stevanovic, S.3
  • 24
    • 84880062482 scopus 로고    scopus 로고
    • The human leukocyte antigen-presented ligandome of B lymphocytes
    • Hassan C, et al. The human leukocyte antigen-presented ligandome of B lymphocytes. Mol Cell Proteomics. 2013;12(7):1829-1843.
    • (2013) Mol Cell Proteomics. , vol.12 , Issue.7 , pp. 1829-1843
    • Hassan, C.1
  • 25
    • 84863680756 scopus 로고    scopus 로고
    • Proteome sampling by the HLA class i antigen processing pathway
    • Hoof I, van Baarle D, Hildebrand WH, Kesmir C. Proteome sampling by the HLA class I antigen processing pathway. PLoS Comput Biol. 2012;8(5):e1002517.
    • (2012) PLoS Comput Biol. , vol.8 , Issue.5 , pp. e1002517
    • Hoof, I.1    Van Baarle, D.2    Hildebrand, W.H.3    Kesmir, C.4
  • 26
    • 84890333499 scopus 로고    scopus 로고
    • HLA class i alleles are associated with peptide-binding repertoires of different size, affinity, and immunogenicity
    • Paul S, Weiskopf D, Angelo MA, Sidney J, Peters B, Sette A. HLA class I alleles are associated with peptide-binding repertoires of different size, affinity, and immunogenicity. J Immunol. 2013;191(12):5831-5839.
    • (2013) J Immunol. , vol.191 , Issue.12 , pp. 5831-5839
    • Paul, S.1    Weiskopf, D.2    Angelo, M.A.3    Sidney, J.4    Peters, B.5    Sette, A.6
  • 27
    • 84898493547 scopus 로고    scopus 로고
    • Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides
    • Granados DP, et al. Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides. Nat Commun. 2014;5:3600.
    • (2014) Nat Commun. , vol.5 , pp. 3600
    • Granados, D.P.1
  • 28
    • 84960424202 scopus 로고    scopus 로고
    • Proteogenomic-based discovery of minor histocompatibility antigens with suitable features for immunotherapy of hemato-logic cancers
    • Granados DP, et al. Proteogenomic-based discovery of minor histocompatibility antigens with suitable features for immunotherapy of hemato-logic cancers. Leukemia. 2016;30(6):1344-1354.
    • (2016) Leukemia. , vol.30 , Issue.6 , pp. 1344-1354
    • Granados, D.P.1
  • 29
    • 85010917490 scopus 로고    scopus 로고
    • Lemieux S. PyGeno: A Python package for precision medicine and proteogenomics
    • Accessed October 31, 2016
    • Daouda T, Perreault C, Lemieux S. pyGeno: A Python package for precision medicine and proteogenomics. F1000Research 2016;5(381). https://f1000research.com/articles/5-381/v2. Accessed October 31, 2016.
    • (2016) F1000Research , vol.5 , Issue.381
    • Daouda, T.1    Perreault, C.2
  • 30
    • 33847630405 scopus 로고    scopus 로고
    • Target-decoy search strategy for increased confidence in large-scale protein iden-tifications by mass spectrometry
    • Elias JE, Gygi SP. Target-decoy search strategy for increased confidence in large-scale protein iden-tifications by mass spectrometry. Nat Methods. 2007;4(3):207-214.
    • (2007) Nat Methods. , vol.4 , Issue.3 , pp. 207-214
    • Elias, J.E.1    Gygi, S.P.2
  • 31
    • 48449106045 scopus 로고    scopus 로고
    • NetMHC-3.0: Accurate web accessible predictions of human, mouse and monkey MHC class i affinities for peptides of length 8-11
    • Web Server issue
    • Lundegaard C, Lamberth K, Harndahl M, Buus S, Lund O, Nielsen M. NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11. Nucleic Acids Res. 2008;36(Web Server issue):W509-W512.
    • (2008) Nucleic Acids Res. , vol.36 , pp. W509-W512
    • Lundegaard, C.1    Lamberth, K.2    Harndahl, M.3    Buus, S.4    Lund, O.5    Nielsen, M.6
  • 32
    • 84857362309 scopus 로고    scopus 로고
    • NetMHCcons: A consensus method for the major histocompatibility complex class i predictions
    • Karosiene E, Lundegaard C, Lund O, Nielsen M. NetMHCcons: a consensus method for the major histocompatibility complex class I predictions. Immunogenetics. 2012;64(3):177-186.
    • (2012) Immunogenetics. , vol.64 , Issue.3 , pp. 177-186
    • Karosiene, E.1    Lundegaard, C.2    Lund, O.3    Nielsen, M.4
  • 33
    • 84941091243 scopus 로고    scopus 로고
    • Allele frequency net 2015 update: New features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations
    • Database issue
    • González-Galarza FF, et al. Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations. Nucleic Acids Res. 2015;43(Database issue):D784-D788.
    • (2015) Nucleic Acids Res. , vol.43 , pp. D784-D788
    • González-Galarza, F.F.1
  • 35
    • 84930468950 scopus 로고    scopus 로고
    • Large-Scale Targeted Proteomics Using Internal Standard Trig-gered-Parallel Reaction Monitoring (IS-PRM)
    • Gallien S, Kim SY, Domon B. Large-Scale Targeted Proteomics Using Internal Standard Trig-gered-Parallel Reaction Monitoring (IS-PRM). Mol Cell Proteomics. 2015;14(6):1630-1644.
    • (2015) Mol Cell Proteomics. , vol.14 , Issue.6 , pp. 1630-1644
    • Gallien, S.1    Kim, S.Y.2    Domon, B.3
  • 36
    • 84924326106 scopus 로고    scopus 로고
    • Mass spectrometry of human leukocyte antigen class i peptidomes reveals strong effects of protein abundance and turnover on antigen presentation
    • Bassani-Sternberg M, Pletscher-Frankild S, Jensen LJ, Mann M. Mass spectrometry of human leukocyte antigen class I peptidomes reveals strong effects of protein abundance and turnover on antigen presentation. Mol Cell Proteomics. 2015;14(3):658-673.
    • (2015) Mol Cell Proteomics. , vol.14 , Issue.3 , pp. 658-673
    • Bassani-Sternberg, M.1    Pletscher-Frankild, S.2    Jensen, L.J.3    Mann, M.4
  • 37
    • 33846534321 scopus 로고    scopus 로고
    • Distorted relation between mRNA copy number and corresponding major his-tocompatibility complex ligand density on the cell surface
    • Weinzierl AO, et al. Distorted relation between mRNA copy number and corresponding major his-tocompatibility complex ligand density on the cell surface. Mol Cell Proteomics. 2007;6(1):102-113.
    • (2007) Mol Cell Proteomics. , vol.6 , Issue.1 , pp. 102-113
    • Weinzierl, A.O.1
  • 38
    • 84924347993 scopus 로고    scopus 로고
    • Immunogenetics. Dynamic profiling of the protein life cycle in response to pathogens
    • Jovanovic M, et al. Immunogenetics. Dynamic profiling of the protein life cycle in response to pathogens. Science. 2015;347(6226):1259038.
    • (2015) Science. , vol.347 , Issue.6226 , pp. 1259038
    • Jovanovic, M.1
  • 39
    • 84957064284 scopus 로고    scopus 로고
    • The interdependence of transcript and protein abundance: New data-new complexities
    • Liu Y, Aebersold R. The interdependence of transcript and protein abundance: new data-new complexities. Mol Syst Biol. 2016;12(1):856.
    • (2016) Mol Syst Biol. , vol.12 , Issue.1 , pp. 856
    • Liu, Y.1    Aebersold, R.2
  • 40
    • 84901599553 scopus 로고    scopus 로고
    • A draft map of the human pro-teome
    • Kim MS, et al. A draft map of the human pro-teome. Nature. 2014;509(7502):575-581.
    • (2014) Nature. , vol.509 , Issue.7502 , pp. 575-581
    • Kim, M.S.1
  • 41
    • 0037342270 scopus 로고    scopus 로고
    • Quantitating protein synthesis, degradation, and endogenous antigen processing
    • Princiotta MF, et al. Quantitating protein synthesis, degradation, and endogenous antigen processing. Immunity. 2003;18(3):343-354.
    • (2003) Immunity. , vol.18 , Issue.3 , pp. 343-354
    • Princiotta, M.F.1
  • 42
    • 84958567960 scopus 로고    scopus 로고
    • Tunable protein synthe-sis by transcript isoforms in human cells
    • Floor SN, Doudna JA. Tunable protein synthe-sis by transcript isoforms in human cells. Elife. 2016;5:e10921.
    • (2016) Elife. , vol.5 , pp. e10921
    • Floor, S.N.1    Doudna, J.A.2
  • 43
    • 66149118241 scopus 로고    scopus 로고
    • Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans
    • Calvo SE, Pagliarini DJ, Mootha VK. Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans. Proc Natl Acad Sci USA. 2009;106(18):7507-7512.
    • (2009) Proc Natl Acad Sci USA. , vol.106 , Issue.18 , pp. 7507-7512
    • Calvo, S.E.1    Pagliarini, D.J.2    Mootha, V.K.3
  • 44
    • 82055164092 scopus 로고    scopus 로고
    • ViennaRNA Package 2.0
    • Lorenz R, et al. ViennaRNA Package 2.0. Algorithms Mol Biol. 2011;6:26.
    • (2011) Algorithms Mol Biol. , vol.6 , pp. 26
    • Lorenz, R.1
  • 45
    • 84872775027 scopus 로고    scopus 로고
    • Translational control by 3'-UTR-binding proteins
    • Szostak E, Gebauer F. Translational control by 3'-UTR-binding proteins. Brief Funct Genomics. 2013;12(1):58-65.
    • (2013) Brief Funct Genomics. , vol.12 , Issue.1 , pp. 58-65
    • Szostak, E.1    Gebauer, F.2
  • 46
    • 84857464812 scopus 로고    scopus 로고
    • Networks controlling mRNA decay in the immune system
    • Schott J, Stoecklin G. Networks controlling mRNA decay in the immune system. Wiley Inter-discip Rev RNA. 2010;1(3):432-456.
    • (2010) Wiley Inter-discip Rev RNA. , vol.1 , Issue.3 , pp. 432-456
    • Schott, J.1    Stoecklin, G.2
  • 47
    • 33745198703 scopus 로고    scopus 로고
    • High guanine and cytosine content increases mRNA levels in mammalian cells
    • Kudla G, Lipinski L, Caffin F, Helwak A, Zylicz M. High guanine and cytosine content increases mRNA levels in mammalian cells. PLoS Biol. 2006;4(6):e180.
    • (2006) PLoS Biol. , vol.4 , Issue.6 , pp. e180
    • Kudla, G.1    Lipinski, L.2    Caffin, F.3    Helwak, A.4    Zylicz, M.5
  • 49
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian A, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA. 2005;102(43):15545-15550.
    • (2005) Proc Natl Acad Sci USA. , vol.102 , Issue.43 , pp. 15545-15550
    • Subramanian, A.1
  • 50
    • 84940502214 scopus 로고    scopus 로고
    • Predicting effective microRNA target sites in mammalian mRNAs
    • Agarwal V, Bell GW, Nam JW, Bartel DP. Predicting effective microRNA target sites in mammalian mRNAs. Elife. 2015;4:e05005.
    • (2015) Elife. , vol.4 , pp. e05005
    • Agarwal, V.1    Bell, G.W.2    Nam, J.W.3    Bartel, D.P.4
  • 51
    • 77956533051 scopus 로고    scopus 로고
    • Deletion of immunoprote-asome subunits imprints on the transcriptome and has a broad impact on peptides presented by major histocompatibility complex i molecules
    • de Verteuil D, et al. Deletion of immunoprote-asome subunits imprints on the transcriptome and has a broad impact on peptides presented by major histocompatibility complex I molecules. Mol Cell Proteomics. 2010;9(9):2034-2047.
    • (2010) Mol Cell Proteomics. , vol.9 , Issue.9 , pp. 2034-2047
    • De Verteuil, D.1
  • 52
    • 84859078891 scopus 로고    scopus 로고
    • GPS-ARM: Computational analysis of the APC/C recognition motif by predicting D-boxes and KEN-boxes
    • Liu Z, et al. GPS-ARM: computational analysis of the APC/C recognition motif by predicting D-boxes and KEN-boxes. PLoS One. 2012;7(3):e34370.
    • (2012) PLoS One. , vol.7 , Issue.3 , pp. e34370
    • Liu, Z.1
  • 53
    • 0030200110 scopus 로고    scopus 로고
    • PEST sequences and regulation by proteolysis
    • Rechsteiner M, Rogers SW. PEST sequences and regulation by proteolysis. Trends Biochem Sci. 1996;21(7):267-271.
    • (1996) Trends Biochem Sci. , vol.21 , Issue.7 , pp. 267-271
    • Rechsteiner, M.1    Rogers, S.W.2
  • 54
    • 84879895159 scopus 로고    scopus 로고
    • Incorporating key position and amino acid residue features to identify general and species-specific Ubiquitin conjugation sites
    • Chen X, Qiu JD, Shi SP, Suo SB, Huang SY, Liang RP. Incorporating key position and amino acid residue features to identify general and species-specific Ubiquitin conjugation sites. Bioin-formatics. 2013;29(13):1614-1622.
    • (2013) Bioin-formatics. , vol.29 , Issue.13 , pp. 1614-1622
    • Chen, X.1    Qiu, J.D.2    Shi, S.P.3    Suo, S.B.4    Huang, S.Y.5    Liang, R.P.6
  • 55
    • 4344559454 scopus 로고    scopus 로고
    • An unstructured initiation site is required for efficient proteasome-mediated degradation
    • Prakash S, Tian L, Ratliff KS, Lehotzky RE, Matouschek A. An unstructured initiation site is required for efficient proteasome-mediated degradation. Nat Struct Mol Biol. 2004;11(9):830-837.
    • (2004) Nat Struct Mol Biol. , vol.11 , Issue.9 , pp. 830-837
    • Prakash, S.1    Tian, L.2    Ratliff, K.S.3    Lehotzky, R.E.4    Matouschek, A.5
  • 56
    • 84907406045 scopus 로고    scopus 로고
    • Intrinsically disordered segments affect protein half-life in the cell and during evolution
    • van der Lee R, et al. Intrinsically disordered segments affect protein half-life in the cell and during evolution. Cell Rep. 2014;8(6):1832-1844.
    • (2014) Cell Rep. , vol.8 , Issue.6 , pp. 1832-1844
    • Van Der Lee, R.1
  • 58
    • 84925251625 scopus 로고    scopus 로고
    • DISOPRED3: Precise disordered region predictions with annotated protein-binding activity
    • Jones DT, Cozzetto D. DISOPRED3: precise disordered region predictions with annotated protein-binding activity. Bioinformatics. 2015;31(6):857-863.
    • (2015) Bioinformatics. , vol.31 , Issue.6 , pp. 857-863
    • Jones, D.T.1    Cozzetto, D.2
  • 59
    • 24044538903 scopus 로고    scopus 로고
    • IUPred: Web server for the prediction of intrin-sically unstructured regions of proteins based on estimated energy content
    • Dosztányi Z, Csizmok V, Tompa P, Simon I. IUPred: web server for the prediction of intrin-sically unstructured regions of proteins based on estimated energy content. Bioinformatics. 2005;21(16):3433-3434.
    • (2005) Bioinformatics. , vol.21 , Issue.16 , pp. 3433-3434
    • Dosztányi, Z.1    Csizmok, V.2    Tompa, P.3    Simon, I.4
  • 62
    • 84863159498 scopus 로고    scopus 로고
    • Identification of new viral genes and transcript isoforms during Epstein-Barr virus reactivation using RNA-Seq
    • Concha M, et al. Identification of new viral genes and transcript isoforms during Epstein-Barr virus reactivation using RNA-Seq. J Virol. 2012;86(3):1458-1467.
    • (2012) J Virol. , vol.86 , Issue.3 , pp. 1458-1467
    • Concha, M.1
  • 63
    • 84924407460 scopus 로고    scopus 로고
    • A comprehensive transcriptional portrait of human cancer cell lines
    • Klijn C, et al. A comprehensive transcriptional portrait of human cancer cell lines. Nat Biotech-nol. 2015;33(3):306-312.
    • (2015) Nat Biotech-nol. , vol.33 , Issue.3 , pp. 306-312
    • Klijn, C.1
  • 64
  • 65
    • 77958078257 scopus 로고    scopus 로고
    • Structural disorder in viral proteins
    • Longhi S. Structural disorder in viral proteins. Protein Pept Lett. 2010;17(8):930-931.
    • (2010) Protein Pept Lett. , vol.17 , Issue.8 , pp. 930-931
    • Longhi, S.1
  • 66
    • 84922967724 scopus 로고    scopus 로고
    • Effects of messenger RNA structure and other translational control mechanisms on major histocompatibility complex-I mediated antigen presentation
    • Murat P, Tellam J. Effects of messenger RNA structure and other translational control mechanisms on major histocompatibility complex-I mediated antigen presentation. Wiley Interdiscip Rev RNA. 2015;6(2):157-171.
    • (2015) Wiley Interdiscip Rev RNA. , vol.6 , Issue.2 , pp. 157-171
    • Murat, P.1    Tellam, J.2
  • 67
    • 84913594338 scopus 로고    scopus 로고
    • Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia
    • Sansom SN, et al. Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia. Genome Res. 2014;24(12):1918-1931.
    • (2014) Genome Res. , vol.24 , Issue.12 , pp. 1918-1931
    • Sansom, S.N.1
  • 68
    • 84936804392 scopus 로고    scopus 로고
    • Differential Features of AIRE-Induced and AIRE-Independent Promiscuous Gene Expression in Thymic Epithelial Cells
    • St-Pierre C, Trofimov A, Brochu S, Lemieux S, Perreault C. Differential Features of AIRE-Induced and AIRE-Independent Promiscuous Gene Expression in Thymic Epithelial Cells. J Immunol. 2015;195(2):498-506.
    • (2015) J Immunol. , vol.195 , Issue.2 , pp. 498-506
    • St-Pierre, C.1    Trofimov, A.2    Brochu, S.3    Lemieux, S.4    Perreault, C.5
  • 69
    • 84939600854 scopus 로고    scopus 로고
    • Single-cell transcriptome analysis reveals coordinated ectopic gene-expression patterns in medullary thymic epithelial cells
    • Brennecke P, et al. Single-cell transcriptome analysis reveals coordinated ectopic gene-expression patterns in medullary thymic epithelial cells. Nat Immunol. 2015;16(9):933-941.
    • (2015) Nat Immunol. , vol.16 , Issue.9 , pp. 933-941
    • Brennecke, P.1
  • 70
    • 84928770388 scopus 로고    scopus 로고
    • Neoanti-gens in cancer immunotherapy
    • Schumacher TN, Schreiber RD. Neoanti-gens in cancer immunotherapy. Science. 2015;348(6230):69-74.
    • (2015) Science. , vol.348 , Issue.6230 , pp. 69-74
    • Schumacher, T.N.1    Schreiber, R.D.2
  • 71
    • 84880276438 scopus 로고    scopus 로고
    • Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumor-reactive T cells
    • Robbins PF, et al. Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumor-reactive T cells. Nat Med. 2013;19(6):747-752.
    • (2013) Nat Med. , vol.19 , Issue.6 , pp. 747-752
    • Robbins, P.F.1
  • 72
    • 84920956731 scopus 로고    scopus 로고
    • Predicting immunogenic tumour mutations by combining mass spec-trometry and exome sequencing
    • Yadav M, et al. Predicting immunogenic tumour mutations by combining mass spec-trometry and exome sequencing. Nature. 2014;515(7528):572-576.
    • (2014) Nature. , vol.515 , Issue.7528 , pp. 572-576
    • Yadav, M.1
  • 75
  • 76
    • 0032619552 scopus 로고    scopus 로고
    • Protein identification and analysis tools in the ExPASy server
    • Wilkins MR, et al. Protein identification and analysis tools in the ExPASy server. Methods Mol Biol. 1999;112:531-552.
    • (1999) Methods Mol Biol. , vol.112 , pp. 531-552
    • Wilkins, M.R.1
  • 77
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000;16(6):276-277.
    • (2000) Trends Genet. , vol.16 , Issue.6 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 78
    • 77950957385 scopus 로고    scopus 로고
    • Bioinfor-matical approaches to characterize intrinsically disordered/unstructured proteins
    • Dosztányi Z, Mészáros B, Simon I. Bioinfor-matical approaches to characterize intrinsically disordered/unstructured proteins. Brief Bioinfor-matics. 2010;11(2):225-243.
    • (2010) Brief Bioinfor-matics. , vol.11 , Issue.2 , pp. 225-243
    • Dosztányi, Z.1    Mészáros, B.2    Simon, I.3
  • 81
    • 84928588521 scopus 로고    scopus 로고
    • The proteomic landscape of triple-negative breast cancer
    • Lawrence RT, et al. The proteomic landscape of triple-negative breast cancer. Cell Rep. 2015;11(4):630-644.
    • (2015) Cell Rep. , vol.11 , Issue.4 , pp. 630-644
    • Lawrence, R.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.