-
1
-
-
84862641013
-
Prediction of lysine ubiquitination with mRMR feature selection and analysis
-
Cai, Y. et al. (2012) Prediction of lysine ubiquitination with mRMR feature selection and analysis. Amino Acids, 42, 1387-1395.
-
(2012)
Amino Acids
, vol.42
, pp. 1387-1395
-
-
Cai, Y.1
-
2
-
-
12344310195
-
Preferred in vivo ubiquitination sites
-
Catic, A. et al. (2004) Preferred in vivo ubiquitination sites. Bioinformatics, 20, 3302-3307.
-
(2004)
Bioinformatics
, vol.20
, pp. 3302-3307
-
-
Catic, A.1
-
3
-
-
58149269554
-
Prediction of integral membrane protein type by collocated hydrophobic amino acid pairs
-
Chen, K. et al. (2009) Prediction of integral membrane protein type by collocated hydrophobic amino acid pairs. J. Comput. Chem., 30, 163-172.
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 163-172
-
-
Chen, K.1
-
4
-
-
79960909253
-
Prediction of Ubiquitination sites by using the composition of k-spaced amino acid pairs
-
Chen, Z. et al. (2011) Prediction of Ubiquitination sites by using the composition of k-spaced amino acid pairs. PLoS One, 6, e22930.
-
(2011)
PLoS One
, vol.6
-
-
Chen, Z.1
-
5
-
-
34247559318
-
UbiProt: A database of ubiquitylated proteins
-
Chernorudskiy, A.L. et al. (2007) UbiProt: A database of ubiquitylated proteins. BMC Bioinformatics, 8, 126.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 126
-
-
Chernorudskiy, A.L.1
-
6
-
-
2442423854
-
Prediction of protein function and pathways in the genome era
-
Gabaldon, T. and Huynen, M.A. (2004) Prediction of protein function and pathways in the genome era. Cell. Mol. Life Sci., 61, 930-944.
-
(2004)
Cell. Mol. Life Sci.
, vol.61
, pp. 930-944
-
-
Gabaldon, T.1
Huynen, M.A.2
-
7
-
-
78650153738
-
Musite, a tool for global prediction of general and kinasespecific phosphorylation sites
-
Gao, J.J. et al. (2010) Musite, a tool for global prediction of general and kinasespecific phosphorylation sites. Mol. Cell Proteomics, 9, 2586-2600.
-
(2010)
Mol. Cell Proteomics
, vol.9
, pp. 2586-2600
-
-
Gao, J.J.1
-
8
-
-
27144529182
-
Ubiquitylation and cell signaling
-
Haglund, K. and Dikic, I. (2005) Ubiquitylation and cell signaling. EMBO J., 24, 3353-3359.
-
(2005)
EMBO J.
, vol.24
, pp. 3353-3359
-
-
Haglund, K.1
Dikic, I.2
-
9
-
-
0026458378
-
Amino-acid substitution matrices from protein blocks
-
Henikoff, S. and Henikoff, J.G. (1992) Amino-acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. USA, 89, 10915-10919.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
10
-
-
0242300110
-
A subset of membrane-associated proteins is ubiquitinated in response to mutations in the endoplasmic reticulum degradation machinery
-
Hitchcock, A.L. et al. (2003) A subset of membrane-associated proteins is ubiquitinated in response to mutations in the endoplasmic reticulum degradation machinery. Proc. Natl. Acad. Sci. USA, 100, 12735-12740.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 12735-12740
-
-
Hitchcock, A.L.1
-
11
-
-
44649101850
-
Atypical ubiquitin chains: New molecular signals 'Protein modifications: Beyond the usual suspects review series
-
Ikeda, F and Dikic, I. (2008) Atypical ubiquitin chains: New molecular signals. 'Protein modifications: Beyond the usual suspects' review series. EMBO Rep., 9, 536-542.
-
(2008)
EMBO Rep.
, vol.9
, pp. 536-542
-
-
Ikeda, F.1
Dikic, I.2
-
12
-
-
0343621535
-
AAindex: Amino acid index database
-
Kawashima, S. and Kanehisa, M. (2000) AAindex: Amino acid index database. Nucleic Acids Res., 28, 374-374.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 374-374
-
-
Kawashima, S.1
Kanehisa, M.2
-
13
-
-
82455179484
-
Systematic and quantitative assessment of the Ubiquitin-modified proteome
-
Kim, W. et al. (2011) Systematic and quantitative assessment of the Ubiquitin-modified proteome. Mol Cell, 44, 325-340.
-
(2011)
Mol Cell
, vol.44
, pp. 325-340
-
-
Kim, W.1
-
14
-
-
78149461454
-
N-Ace: Using solvent accessibility and physicochemical properties to identify protein N-acetylation sites
-
Lee, T.Y. et al. (2010) N-Ace: Using solvent accessibility and physicochemical properties to identify protein N-acetylation sites. J. Comput. Chem., 31, 2759-2771.
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 2759-2771
-
-
Lee, T.Y.1
-
15
-
-
79952369924
-
Incorporating distant sequence features and radial basis function networks to identify Ubiquitin conjugation sites
-
Lee, T.Y. et al. (2011) Incorporating distant sequence features and radial basis function networks to identify Ubiquitin conjugation sites. PLoS One, 6, e17331.
-
(2011)
PLoS One
, vol.6
-
-
Lee, T.Y.1
-
16
-
-
54049153629
-
SCUD: Saccharomyces cerevisiae ubiquitination database
-
Lee, W.C. et al. (2008) SCUD: Saccharomyces cerevisiae Ubiquitination database. BMC Genomics, 9, 440.
-
(2008)
BMC Genomics
, vol.9
, pp. 440
-
-
Lee, W.C.1
-
17
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li, W. and Godzik, A. (2006) Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics, 22, 1658-1659.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
18
-
-
23044506681
-
The ubiquitin-proteasome pathway and its role in cancer
-
Mani, A. and Gelmann, E.P. (2005) The ubiquitin-proteasome pathway and its role in cancer. J. Clin. Oncol., 23, 4776-4789.
-
(2005)
J. Clin. Oncol.
, vol.23
, pp. 4776-4789
-
-
Mani, A.1
Gelmann, E.P.2
-
19
-
-
34447527882
-
Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase
-
Moses, A.M. et al. (2007) Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase. Genome Biol., 8, R23.
-
(2007)
Genome Biol.
, vol.8
-
-
Moses, A.M.1
-
20
-
-
78649884719
-
Prediction of tyrosine sulfation with mRMR feature selection and analysis
-
Niu, S. et al. (2010) Prediction of tyrosine sulfation with mRMR feature selection and analysis. J. Proteome Res., 9, 6490-6497.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 6490-6497
-
-
Niu, S.1
-
21
-
-
0041706156
-
A proteomics approach to understanding protein ubiquitination
-
Peng, J.M. et al. (2003) A proteomics approach to understanding protein ubiquitination. Nat. Biotechnol., 21, 921-926.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 921-926
-
-
Peng, J.M.1
-
22
-
-
9744227183
-
Ubiquitin: Structures, functions, mechanisms
-
Pickart, C.M. and Eddins, M.J. (2004) Ubiquitin: Structures, functions, mechanisms. BBAMol. Cell Res., 1695, 55-72.
-
(2004)
BBAMol. Cell Res.
, vol.1695
, pp. 55-72
-
-
Pickart, C.M.1
Eddins, M.J.2
-
23
-
-
77449103113
-
Identification, analysis, and prediction of protein ubiquitination sites
-
Radivojac, P. et al. (2010) Identification, analysis, and prediction of protein ubiquitination sites. Proteins, 78, 365-380.
-
(2010)
Proteins
, vol.78
, pp. 365-380
-
-
Radivojac, P.1
-
24
-
-
33750946999
-
Narrative review: Protein degradation and human diseases: The ubiquitin connection
-
Reinstein, E. and Ciechanover, A. (2006) Narrative review: Protein degradation and human diseases: The ubiquitin connection. Ann. Intern. Med., 145, 676-684.
-
(2006)
Ann. Intern. Med.
, vol.145
, pp. 676-684
-
-
Reinstein, E.1
Ciechanover, A.2
-
25
-
-
78650253267
-
Ubiquitylation of an ERAD substrate occurs on multiple types of amino acids
-
Shimizu, Y. et al. (2010) Ubiquitylation of an ERAD substrate occurs on multiple types of amino acids. Mol Cell, 40, 917-926.
-
(2010)
Mol Cell
, vol.40
, pp. 917-926
-
-
Shimizu, Y.1
-
26
-
-
34247525565
-
Methods for the purification of ubiquitinated proteins
-
Tomlinson, E. et al. (2007) Methods for the purification of ubiquitinated proteins. Proteomics, 7, 1016-1022.
-
(2007)
Proteomics
, vol.7
, pp. 1016-1022
-
-
Tomlinson, E.1
-
27
-
-
48249145694
-
Computational identification of ubiquitylation sites from protein sequences
-
Tung, C.W. and Ho, S.Y. (2008) Computational identification of ubiquitylation sites from protein sequences. BMC Bioinformatics, 9, 310.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 310
-
-
Tung, C.W.1
Ho, S.Y.2
-
28
-
-
0032594959
-
An overview of statistical learning theory
-
Vapnik, V.N. (1999) An overview of statistical learning theory. IEEE. Trans. Neural Netw., 10, 988-999.
-
(1999)
IEEE. Trans. Neural Netw.
, vol.10
, pp. 988-999
-
-
Vapnik, V.N.1
-
29
-
-
80054033461
-
A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles
-
M111.013284
-
Wagner, S.A. et al. (2011) A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. Mol. Cell Proteomics, 10, M111.013284.
-
(2011)
Mol. Cell Proteomics
, vol.10
-
-
Wagner, S.A.1
-
30
-
-
0346799108
-
Prediction of protein function from protein sequence and structure
-
Whisstock, J.C. and Lesk, A.M. (2003) Prediction of protein function from protein sequence and structure. Q. Rev. Biophys., 36, 307-340.
-
(2003)
Q. Rev. Biophys.
, vol.36
, pp. 307-340
-
-
Whisstock, J.C.1
Lesk, A.M.2
-
31
-
-
78651225388
-
Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling
-
Xu, G. et al. (2010) Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling. Nat. Biotechnol., 28, 868-873.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 868-873
-
-
Xu, G.1
|