-
2
-
-
26944442017
-
Multi-virulence-locus sequence typing clarifies epidemiology of recent listeriosis outbreaks in the United States
-
Chen Y, Zhang W, Knabel SJ. 2005. Multi-virulence-locus sequence typing clarifies epidemiology of recent listeriosis outbreaks in the United States. J Clin Microbiol 43:5291-5294. http://dx.doi.org/10.1128/JCM.43.10.5291-5294.2005.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 5291-5294
-
-
Chen, Y.1
Zhang, W.2
Knabel, S.J.3
-
3
-
-
84997556875
-
Multistate outbreak of listeriosis linked to commercially produced, prepackaged caramel apples made from Bidart Bros. apples (final update)
-
Atlanta, GA
-
Centers for Disease Control and Prevention. 2015. Multistate outbreak of listeriosis linked to commercially produced, prepackaged caramel apples made from Bidart Bros. apples (final update). Centers for Disease Control and Prevention, Atlanta, GA. http://www.cdc.gov/listeria/outbreaks/caramel-apples-12-14/.
-
(2015)
Centers for Disease Control and Prevention
-
-
-
4
-
-
84934342624
-
Multistate outbreak of listeriosis caused by imported cheese and evidence of cross-contamination of other cheeses, USA, 2012
-
Heiman KE, Garalde VB, Gronostaj M, Jackson KA, Beam S, Joseph L, Saupe A, Ricotta E, Waechter H, Wellman A, Adams-Cameron M, Ray G, Fields A, Chen Y, Datta A, Burall L, Sabol A, Kucerova Z, Trees E, Metz M, Leblanc P, Lance S, Griffin PM, Tauxe RV, Silk BJ. 2015. Multistate outbreak of listeriosis caused by imported cheese and evidence of cross-contamination of other cheeses, USA, 2012. Epidemiol Infect 144:2698-2708. http://dx.doi.org/10.1017/S095026881500117X.
-
(2015)
Epidemiol Infect
, vol.144
, pp. 2698-2708
-
-
Heiman, K.E.1
Garalde, V.B.2
Gronostaj, M.3
Jackson, K.A.4
Beam, S.5
Joseph, L.6
Saupe, A.7
Ricotta, E.8
Waechter, H.9
Wellman, A.10
Adams-Cameron, M.11
Ray, G.12
Fields, A.13
Chen, Y.14
Datta, A.15
Burall, L.16
Sabol, A.17
Kucerova, Z.18
Trees, E.19
Metz, M.20
Leblanc, P.21
Lance, S.22
Griffin, P.M.23
Tauxe, R.V.24
Silk, B.J.25
more..
-
5
-
-
84956606723
-
Prospective whole-genome sequencing enhances national surveillance of Listeria monocytogenes
-
Kwong JC, Mercoulia K, Tomita T, Easton M, Li HY, Bulach DM, Stinear TP, Seemann T, Howden BP. 2016. Prospective whole-genome sequencing enhances national surveillance of Listeria monocytogenes. J Clin Microbiol 54:333-342. http://dx.doi.org/10.1128/JCM.02344-15.
-
(2016)
J Clin Microbiol
, vol.54
, pp. 333-342
-
-
Kwong, J.C.1
Mercoulia, K.2
Tomita, T.3
Easton, M.4
Li, H.Y.5
Bulach, D.M.6
Stinear, T.P.7
Seemann, T.8
Howden, B.P.9
-
6
-
-
84981263678
-
Whole-genome sequencing used to investigate a nationwide outbreak of listeriosis caused by readyto-eat delicatessen meat, Denmark, 2014
-
Kvistholm Jensen A, Nielsen EM, Bjorkman JT, Jensen T, Muller L, Persson S, Bjerager G, Perge A, Krause TG, Kiil K, Sorensen G, Andersen JK, Molbak K, Ethelberg S. 2016. Whole-genome sequencing used to investigate a nationwide outbreak of listeriosis caused by readyto-eat delicatessen meat, Denmark, 2014. Clin Infect Dis 63: 333-33. http://dx.doi.org/10.1093/cid/ciw192.
-
(2016)
Clin Infect Dis
, vol.63
, pp. 333-333
-
-
Kvistholm Jensen, A.1
Nielsen, E.M.2
Bjorkman, J.T.3
Jensen, T.4
Muller, L.5
Persson, S.6
Bjerager, G.7
Perge, A.8
Krause, T.G.9
Kiil, K.10
Sorensen, G.11
Andersen, J.K.12
Molbak, K.13
Ethelberg, S.14
-
7
-
-
84945185623
-
It is not all about single nucleotide polymorphisms: comparison of mobile genetic elements and deletions in Listeria monocytogenes genomes links cases of hospital-acquired listeriosis to the environmental source
-
Wang Q, Holmes N, Martinez E, Howard P, Hill-Cawthorne G, Sintchenko V. 2015. It is not all about single nucleotide polymorphisms: comparison of mobile genetic elements and deletions in Listeria monocytogenes genomes links cases of hospital-acquired listeriosis to the environmental source. J Clin Microbiol 53:3492-3500. http://dx.doi.org/10.1128/JCM.00202-15.
-
(2015)
J Clin Microbiol
, vol.53
, pp. 3492-3500
-
-
Wang, Q.1
Holmes, N.2
Martinez, E.3
Howard, P.4
Hill-Cawthorne, G.5
Sintchenko, V.6
-
8
-
-
84911435706
-
An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella
-
Pettengill JB, Luo Y, Davis S, Chen Y, Gonzalez-Escalona N, Ottesen A, Rand H, Allard MW, Strain E. 2014. An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella. PeerJ 2:e620. http://dx.doi.org/10.7717/peerj.620.
-
(2014)
PeerJ
, vol.2
-
-
Pettengill, J.B.1
Luo, Y.2
Davis, S.3
Chen, Y.4
Gonzalez-Escalona, N.5
Ottesen, A.6
Rand, H.7
Allard, M.W.8
Strain, E.9
-
9
-
-
77949463821
-
High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak
-
Gilmour MW, Graham M, Van Domselaar G, Tyler S, Kent H, Trout-Yakel KM, Larios O, Allen V, Lee B, Nadon C. 2010. High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak. BMC Genomics 11:120. http://dx.doi.org/10.1186/1471-2164-11-120.
-
(2010)
BMC Genomics
, vol.11
, pp. 120
-
-
Gilmour, M.W.1
Graham, M.2
Van Domselaar, G.3
Tyler, S.4
Kent, H.5
Trout-Yakel, K.M.6
Larios, O.7
Allen, V.8
Lee, B.9
Nadon, C.10
-
10
-
-
84940043454
-
Defining and evaluating a core genome multilocus sequence typing scheme for whole-genome sequence-based typing of Listeria monocytogenes
-
Ruppitsch W, Pietzka A, Prior K, Bletz S, Fernandez HL, Allerberger F, Harmsen D, Mellmann A. 2015. Defining and evaluating a core genome multilocus sequence typing scheme for whole-genome sequence-based typing of Listeria monocytogenes. J Clin Microbiol 53:2869-2876. http://dx.doi.org/10.1128/JCM.01193-15.
-
(2015)
J Clin Microbiol
, vol.53
, pp. 2869-2876
-
-
Ruppitsch, W.1
Pietzka, A.2
Prior, K.3
Bletz, S.4
Fernandez, H.L.5
Allerberger, F.6
Harmsen, D.7
Mellmann, A.8
-
11
-
-
84973504216
-
CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data
-
Davis S, Pettengill JB, Luo Y, Payne J, Shpuntoff A, Rand H, Strain A. 2015. CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data. PeerJ Comput Sci 1:e20. http://dx.doi.org/10.7717/peerj-cs.20.
-
(2015)
PeerJ Comput Sci
, vol.1
-
-
Davis, S.1
Pettengill, J.B.2
Luo, Y.3
Payne, J.4
Shpuntoff, A.5
Rand, H.6
Strain, A.7
-
12
-
-
84891935788
-
When whole-genome alignments just won't work: kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes
-
Gardner SN, Hall BG. 2013. When whole-genome alignments just won't work: kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes. PLoS One 8:e81760. http://dx.doi.org/10.1371/journal.pone.0081760.
-
(2013)
PLoS One
, vol.8
-
-
Gardner, S.N.1
Hall, B.G.2
-
13
-
-
84991223463
-
Core genome multilocus sequence typing for identification of globally distributed clonal groups and differentiation of outbreak strains of Listeria monocytogenes
-
Chen Y, Gonzalez-Escalona N, Hammack TS, Allard M, Strain EA, Brown EW. 2016. Core genome multilocus sequence typing for identification of globally distributed clonal groups and differentiation of outbreak strains of Listeria monocytogenes. Appl Environ Microbiol 82:6258-6272. http://dx.doi.org/10.1128/AEM.01532-16.
-
(2016)
Appl Environ Microbiol
, vol.82
, pp. 6258-6272
-
-
Chen, Y.1
Gonzalez-Escalona, N.2
Hammack, T.S.3
Allard, M.4
Strain, E.A.5
Brown, E.W.6
-
14
-
-
84981210543
-
Implementation of nationwide real-time whole-genome sequencing to enhance listeriosis outbreak detection and investigation
-
Jackson BR, Tarr C, Strain E, Jackson KA, Conrad A, Carleton H, Katz LS, Stroika S, Gould LH, Mody RK, Silk BJ, Beal J, Chen Y, Timme R, Doyle M, Fields A, Wise M, Tillman G, Defibaugh-Chavez S, Kucerova Z, Sabol A, Roache K, Trees E, Simmons M, Wasilenko J, Kubota K, Pouseele H, Klimke W, Besser J, Brown E, Allard M, Gerner-Smidt P. 2016. Implementation of nationwide real-time whole-genome sequencing to enhance listeriosis outbreak detection and investigation. Clin Infect Dis 63:380-386. http://dx.doi.org/10.1093/cid/ciw242.
-
(2016)
Clin Infect Dis
, vol.63
, pp. 380-386
-
-
Jackson, B.R.1
Tarr, C.2
Strain, E.3
Jackson, K.A.4
Conrad, A.5
Carleton, H.6
Katz, L.S.7
Stroika, S.8
Gould, L.H.9
Mody, R.K.10
Silk, B.J.11
Beal, J.12
Chen, Y.13
Timme, R.14
Doyle, M.15
Fields, A.16
Wise, M.17
Tillman, G.18
Defibaugh-Chavez, S.19
Kucerova, Z.20
Sabol, A.21
Roache, K.22
Trees, E.23
Simmons, M.24
Wasilenko, J.25
Kubota, K.26
Pouseele, H.27
Klimke, W.28
Besser, J.29
Brown, E.30
Allard, M.31
Gerner-Smidt, P.32
more..
-
15
-
-
84966333965
-
Practical value of food pathogen traceability through building a whole-genome sequencing network and database
-
Allard MW, Strain E, Melka D, Bunning K, Musser SM, Brown EW, Timme R. 2016. Practical value of food pathogen traceability through building a whole-genome sequencing network and database. J Clin Microbiol 54:1975-1983. http://dx.doi.org/10.1128/JCM.00081-16.
-
(2016)
J Clin Microbiol
, vol.54
, pp. 1975-1983
-
-
Allard, M.W.1
Strain, E.2
Melka, D.3
Bunning, K.4
Musser, S.M.5
Brown, E.W.6
Timme, R.7
-
16
-
-
84929045601
-
Notes from the field: listeriosis associated with stone fruit-United States, 2014
-
Jackson BR, Salter M, Tarr C, Conrad A, Harvey E, Steinbock L, Saupe A, Sorenson A, Katz L, Stroika S, Jackson KA, Carleton H, Kucerova Z, Melka D, Strain E, Parish M, Mody RK. 2015. Notes from the field: listeriosis associated with stone fruit-United States, 2014. Morb Mortal Wkly Rep 64:282-283.
-
(2015)
Morb Mortal Wkly Rep
, vol.64
, pp. 282-283
-
-
Jackson, B.R.1
Salter, M.2
Tarr, C.3
Conrad, A.4
Harvey, E.5
Steinbock, L.6
Saupe, A.7
Sorenson, A.8
Katz, L.9
Stroika, S.10
Jackson, K.A.11
Carleton, H.12
Kucerova, Z.13
Melka, D.14
Strain, E.15
Parish, M.16
Mody, R.K.17
-
17
-
-
33748681886
-
-
US Food and Drug Administration, Silver Spring, MD
-
Hitchins AD, Jinneman K, Chen Y. 2016. Food and Drug Administration bacteriological analytical manual chapter 10, detection and enumeration of Listeria monocytogenes in foods. US Food and Drug Administration, Silver Spring, MD. http://www.fda.gov/Food/FoodScienceResearch/LaboratoryMethods/ucm071400.htm.
-
(2016)
Food and Drug Administration bacteriological analytical manual chapter 10, detection and enumeration of Listeria monocytogenes in foods
-
-
Hitchins, A.D.1
Jinneman, K.2
Chen, Y.3
-
18
-
-
0002294347
-
A simple sequentially rejective multiple test procedure
-
Holm S. 1979. A simple sequentially rejective multiple test procedure. Scand J Statist 6:65-70.
-
(1979)
Scand J Statist
, vol.6
, pp. 65-70
-
-
Holm, S.1
-
19
-
-
0030632880
-
Notes on methodology-testing for differences with the nonparametric Mann-WhitneyUtest
-
Whitney J. 1997. Notes on methodology-testing for differences with the nonparametric Mann-WhitneyUtest. JWoundOstomy Continence Nurs 24:12. http://dx.doi.org/10.1016/S1071-5754(97)90044-9.
-
(1997)
JWoundOstomy Continence Nurs
, vol.24
, pp. 12
-
-
Whitney, J.1
-
20
-
-
1842426345
-
Statistics review 9: one-way analysis of variance
-
Bewick V, Cheek L, Ball J. 2004. Statistics review 9: one-way analysis of variance. Crit Care 8:130-136. http://dx.doi.org/10.1186/cc2836.
-
(2004)
Crit Care
, vol.8
, pp. 130-136
-
-
Bewick, V.1
Cheek, L.2
Ball, J.3
-
21
-
-
79951997218
-
Evaluation of a serotyping scheme using a combination of an antibody-based serogrouping method and a multiplex PCR assay for identifying the major serotypes of Listeria monocytogenes
-
Burall LS, Simpson AC, Datta AR. 2011. Evaluation of a serotyping scheme using a combination of an antibody-based serogrouping method and a multiplex PCR assay for identifying the major serotypes of Listeria monocytogenes. J Food Prot 74:403-409. http://dx.doi.org/10.4315/0362-028X.JFP-10-355.
-
(2011)
J Food Prot
, vol.74
, pp. 403-409
-
-
Burall, L.S.1
Simpson, A.C.2
Datta, A.R.3
-
22
-
-
0035843644
-
PulseNet standardized protocol for subtyping Listeria monocytogenes by macrorestriction and pulsed-field gel electrophoresis
-
Graves LM, Swaminathan B. 2001. PulseNet standardized protocol for subtyping Listeria monocytogenes by macrorestriction and pulsed-field gel electrophoresis. Int J Food Microbiol 65:55-62. http://dx.doi.org/10.1016/S0168-1605(00)00501-8.
-
(2001)
Int J Food Microbiol
, vol.65
, pp. 55-62
-
-
Graves, L.M.1
Swaminathan, B.2
-
23
-
-
85008425403
-
Draft genome sequence of Salmonella enterica subsp. enterica serovar Give, isolated from an imported chili powder product
-
Wang H, Chen Y, Ayers S, Melka D, Laasri A, Payne JS, Zheng J, Son I, Timme R, Kastanis G, Hammack TS, Strain E, Allard MW, Evans PS, Brown EW. 2015. Draft genome sequence of Salmonella enterica subsp. enterica serovar Give, isolated from an imported chili powder product. Genome Announc 3(4):e00726-15. http://dx.doi.org/10.1128/genomeA.00726-15.
-
(2015)
Genome Announc
, vol.3
, Issue.4
-
-
Wang, H.1
Chen, Y.2
Ayers, S.3
Melka, D.4
Laasri, A.5
Payne, J.S.6
Zheng, J.7
Son, I.8
Timme, R.9
Kastanis, G.10
Hammack, T.S.11
Strain, E.12
Allard, M.W.13
Evans, P.S.14
Brown, E.W.15
-
24
-
-
84929475544
-
Fully assembled genome sequence for Salmonella enterica subsp. enterica serovar Javiana CFSAN001992
-
Allard MW, Muruvanda T, Strain E, Timme R, Luo Y, Wang C, Keys CE, Payne J, Cooper T, Luong K, Song Y, Chin CS, Korlach J, Roberts RJ, Evans P, Musser SM, Brown EW. 2013. Fully assembled genome sequence for Salmonella enterica subsp. enterica serovar Javiana CFSAN001992. Genome Announc 1(2):e00081-13. http://dx.doi.org/10.1128/genomeA.00081-13.
-
(2013)
Genome Announc
, vol.1
, Issue.2
-
-
Allard, M.W.1
Muruvanda, T.2
Strain, E.3
Timme, R.4
Luo, Y.5
Wang, C.6
Keys, C.E.7
Payne, J.8
Cooper, T.9
Luong, K.10
Song, Y.11
Chin, C.S.12
Korlach, J.13
Roberts, R.J.14
Evans, P.15
Musser, S.M.16
Brown, E.W.17
-
25
-
-
84880798154
-
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
-
Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J. 2013. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 10:563-569. http://dx.doi.org/10.1038/nmeth.2474.
-
(2013)
Nat Methods
, vol.10
, pp. 563-569
-
-
Chin, C.S.1
Alexander, D.H.2
Marks, P.3
Klammer, A.A.4
Drake, J.5
Heiner, C.6
Clum, A.7
Copeland, A.8
Huddleston, J.9
Eichler, E.E.10
Turner, S.W.11
Korlach, J.12
-
26
-
-
84870880581
-
Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing
-
Fang G, Munera D, Friedman DI, Mandlik A, Chao MC, Banerjee O, Feng Z, Losic B, Mahajan MC, Jabado OJ, Deikus G, Clark TA, Luong K, Murray IA, Davis BM, Keren-Paz A, Chess A, Roberts RJ, Korlach J, Turner SW, Kumar V, Waldor MK, Schadt EE. 2012. Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing. Nat Biotechnol 30:1232-1239. http://dx.doi.org/10.1038/nbt.2432.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 1232-1239
-
-
Fang, G.1
Munera, D.2
Friedman, D.I.3
Mandlik, A.4
Chao, M.C.5
Banerjee, O.6
Feng, Z.7
Losic, B.8
Mahajan, M.C.9
Jabado, O.J.10
Deikus, G.11
Clark, T.A.12
Luong, K.13
Murray, I.A.14
Davis, B.M.15
Keren-Paz, A.16
Chess, A.17
Roberts, R.J.18
Korlach, J.19
Turner, S.W.20
Kumar, V.21
Waldor, M.K.22
Schadt, E.E.23
more..
-
27
-
-
75549086595
-
REBASE-a database for DNA restriction and modification: enzymes, genes and genomes
-
Roberts RJ, Vincze T, Posfai J, Macelis D. 2010. REBASE-a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res 38:D234-D236. http://dx.doi.org/10.1093/nar/gkp874.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D234-D236
-
-
Roberts, R.J.1
Vincze, T.2
Posfai, J.3
Macelis, D.4
-
28
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25. http://dx.doi.org/10.1186/gb-2009-10-3-r25.
-
(2009)
Genome Biol
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
29
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078-2079. http://dx.doi.org/10.1093/bioinformatics/btp352.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
30
-
-
69949122158
-
VarScan: variant detection in massively parallel sequencing of individual and pooled samples
-
Koboldt DC, Chen K, Wylie T, Larson DE, McLellan MD, Mardis ER, Weinstock GM, Wilson RK, Ding L. 2009. VarScan: variant detection in massively parallel sequencing of individual and pooled samples. Bioinformatics 25:2283-2285. http://dx.doi.org/10.1093/bioinformatics/btp373.
-
(2009)
Bioinformatics
, vol.25
, pp. 2283-2285
-
-
Koboldt, D.C.1
Chen, K.2
Wylie, T.3
Larson, D.E.4
McLellan, M.D.5
Mardis, E.R.6
Weinstock, G.M.7
Wilson, R.K.8
Ding, L.9
-
33
-
-
13244255415
-
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
-
Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113. http://dx.doi.org/10.1186/1471-2105-5-113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
34
-
-
84976865403
-
The Pfam protein families database: towards a more sustainable future
-
Finn RD, Coggill P, Eberhardt RY, Eddy SR, Mistry J, Mitchell AL, Potter SC, Punta M, Qureshi M, Sangrador-Vegas A, Salazar GA, Tate J, Bateman A. 2016. The Pfam protein families database: towards a more sustainable future. Nucleic Acids Res 44:D279-D285. http://dx.doi.org/10.1093/nar/gkv1344.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D279-D285
-
-
Finn, R.D.1
Coggill, P.2
Eberhardt, R.Y.3
Eddy, S.R.4
Mistry, J.5
Mitchell, A.L.6
Potter, S.C.7
Punta, M.8
Qureshi, M.9
Sangrador-Vegas, A.10
Salazar, G.A.11
Tate, J.12
Bateman, A.13
-
35
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S. 2000. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28:27-30. http://dx.doi.org/10.1093/nar/28.1.27.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
36
-
-
79959979274
-
PHAST: a fast phage search tool
-
Zhou Y, Liang Y, Lynch KH, Dennis JJ, Wishart DS. 2011. PHAST: a fast phage search tool. Nucleic Acids Res 39:W347-W352. http://dx.doi.org/10.1093/nar/gkr485.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W347-W352
-
-
Zhou, Y.1
Liang, Y.2
Lynch, K.H.3
Dennis, J.J.4
Wishart, D.S.5
-
37
-
-
84871637833
-
Novel epidemic clones of Listeria monocytogenes, United States, 2011
-
Lomonaco S, Verghese B, Gerner-Smidt P, Tarr C, Gladney L, Joseph L, Katz L, Turnsek M, Frace M, Chen Y, Brown E, Meinersmann R, Berrang M, Knabel S. 2013. Novel epidemic clones of Listeria monocytogenes, United States, 2011. Emerg Infect Dis 19:147-150. http://dx.doi.org/10.3201/eid1901.121167.
-
(2013)
Emerg Infect Dis
, vol.19
, pp. 147-150
-
-
Lomonaco, S.1
Verghese, B.2
Gerner-Smidt, P.3
Tarr, C.4
Gladney, L.5
Joseph, L.6
Katz, L.7
Turnsek, M.8
Frace, M.9
Chen, Y.10
Brown, E.11
Meinersmann, R.12
Berrang, M.13
Knabel, S.14
-
38
-
-
84883421755
-
Multistate outbreak of listeriosis associated with cantaloupe
-
McCollum JT, Cronquist AB, Silk BJ, Jackson KA, O'Connor KA, Cosgrove S, Gossack JP, Parachini SS, Jain NS, Ettestad P, Ibraheem M, Cantu V, Joshi M, DuVernoy T, Fogg NW, Jr, Gorny JR, Mogen KM, Spires C, Teitell P, Joseph LA, Tarr CL, Imanishi M, Neil KP, Tauxe RV, Mahon BE. 2013. Multistate outbreak of listeriosis associated with cantaloupe. N Engl J Med 369:944-953. http://dx.doi.org/10.1056/NEJMoa1215837.
-
(2013)
N Engl J Med
, vol.369
, pp. 944-953
-
-
McCollum, J.T.1
Cronquist, A.B.2
Silk, B.J.3
Jackson, K.A.4
O'Connor, K.A.5
Cosgrove, S.6
Gossack, J.P.7
Parachini, S.S.8
Jain, N.S.9
Ettestad, P.10
Ibraheem, M.11
Cantu, V.12
Joshi, M.13
DuVernoy, T.14
Fogg, N.W.15
Gorny, J.R.16
Mogen, K.M.17
Spires, C.18
Teitell, P.19
Joseph, L.A.20
Tarr, C.L.21
Imanishi, M.22
Neil, K.P.23
Tauxe, R.V.24
Mahon, B.E.25
more..
-
39
-
-
84997083125
-
-
Food Safety News, Seattle, WA
-
Food Safety News. 2014. Organic mangoes recalled for possible Listeria contamination. Food Safety News, Seattle, WA. http://www.foodsafetynews.com/2014/05/organic-mangos-recalled-for-possible-listeria-contamination/#.Ve-UkZc-Yg4.
-
(2014)
Organic mangoes recalled for possible Listeria contamination
-
-
-
40
-
-
84997328885
-
-
Food Safety News, Seattle, WA
-
Food Safety News. 2013. Apple slices recalled for possible Listeria contamination. Food Safety News, Seattle, WA. http://www.foodsafetynews.com/2013/11/apple-slices-recalled-for-potential-listeria-contamination/#.Ve-Xc5c-Yg4.
-
(2013)
Apple slices recalled for possible Listeria contamination
-
-
-
41
-
-
84997105806
-
-
Food Safety News, Seattle, WA
-
Food Safety News. 2012. Listeria cantaloupe recall expanded to 188, 000 melons. Food Safety News, Seattle, WA. http://www.foodsafetynews.com/2012/08/listeria-cantaloupe-recall-expanded-to-188000-melons/#.Ve-Ym5c-Yg4.
-
(2012)
Listeria cantaloupe recall expanded to 188, 000 melons
-
-
-
42
-
-
84997083540
-
-
US Food and Drug Administration, Silver Spring, MD
-
US Food and Drug Administration. 2015. BBB-pHvalues of various foods. US Food and Drug Administration, Silver Spring, MD. http://www.fda.gov/Food/FoodborneIllnessContaminants/CausesOfIllnessBadBugBook/ucm122561.htm.
-
(2015)
BBB-pHvalues of various foods
-
-
-
43
-
-
77955948253
-
Attachment and colonization by Escherichia coli O157:H7, Listeria monocytogenes, Salmonella enterica subsp. enterica serovar Typhimurium, and Staphylococcus aureus on stone fruit surfaces and survival through a simulated commercial export chain
-
Collignon S, Korsten L. 2010. Attachment and colonization by Escherichia coli O157:H7, Listeria monocytogenes, Salmonella enterica subsp. enterica serovar Typhimurium, and Staphylococcus aureus on stone fruit surfaces and survival through a simulated commercial export chain. J Food Prot 73:1247-1256.
-
(2010)
J Food Prot
, vol.73
, pp. 1247-1256
-
-
Collignon, S.1
Korsten, L.2
-
44
-
-
84973508294
-
Recovery and growth potential of Listeria monocytogenes in temperature abused milkshakes prepared from naturally contaminated ice cream linked to a listeriosis outbreak
-
Chen Y, Allard E, Wooten A, Hur M, Sheth I, Laasri A, Hammack TS, Macarisin D. 2016. Recovery and growth potential of Listeria monocytogenes in temperature abused milkshakes prepared from naturally contaminated ice cream linked to a listeriosis outbreak. Front Microbiol 7:764. http://dx.doi.org/10.3389/fmicb.2016.00764.
-
(2016)
Front Microbiol
, vol.7
, pp. 764
-
-
Chen, Y.1
Allard, E.2
Wooten, A.3
Hur, M.4
Sheth, I.5
Laasri, A.6
Hammack, T.S.7
Macarisin, D.8
-
45
-
-
84901610271
-
Whole genome sequencing as a tool to investigate a cluster of seven cases of listeriosis in Austria and Germany, 2011-2013
-
Schmid D, Allerberger F, Huhulescu S, Pietzka A, Amar C, Kleta S, Prager R, Preussel K, Aichinger E, Mellmann A. 2014. Whole genome sequencing as a tool to investigate a cluster of seven cases of listeriosis in Austria and Germany, 2011-2013. Clin Microbiol Infect 20:431-436. http://dx.doi.org/10.1111/1469-0691.12638.
-
(2014)
Clin Microbiol Infect
, vol.20
, pp. 431-436
-
-
Schmid, D.1
Allerberger, F.2
Huhulescu, S.3
Pietzka, A.4
Amar, C.5
Kleta, S.6
Prager, R.7
Preussel, K.8
Aichinger, E.9
Mellmann, A.10
-
46
-
-
84876343851
-
Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated at two different fish processing plants sampled 6 years apart
-
Holch A, Webb K, Lukjancenko O, Ussery D, Rosenthal BM, Gram L. 2013. Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated at two different fish processing plants sampled 6 years apart. Appl Environ Microbiol 79:2944-2951. http://dx.doi.org/10.1128/AEM.03715-12.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 2944-2951
-
-
Holch, A.1
Webb, K.2
Lukjancenko, O.3
Ussery, D.4
Rosenthal, B.M.5
Gram, L.6
-
47
-
-
60549116580
-
Short-term genome evolution of Listeria monocytogenes in a noncontrolled environment
-
Orsi RH, Borowsky ML, Lauer P, Young SK, Nusbaum C, Galagan JE, Birren BW, Ivy RA, Sun Q, Graves LM, Swaminathan B, Wiedmann M. 2008. Short-term genome evolution of Listeria monocytogenes in a noncontrolled environment. BMC Genomics 9:539. http://dx.doi.org/10.1186/1471-2164-9-539.
-
(2008)
BMC Genomics
, vol.9
, pp. 539
-
-
Orsi, R.H.1
Borowsky, M.L.2
Lauer, P.3
Young, S.K.4
Nusbaum, C.5
Galagan, J.E.6
Birren, B.W.7
Ivy, R.A.8
Sun, Q.9
Graves, L.M.10
Swaminathan, B.11
Wiedmann, M.12
-
48
-
-
84997196328
-
Whole genome analysis of Listeria monocytogenes epidemic clone II isolates from food processing plants
-
San Francisco, CA, 16 to 19 June 2012
-
Chen Y, Li C, Strain EA, Knabel SJ, Allard MW, Brown EW. 2012. Whole genome analysis of Listeria monocytogenes epidemic clone II isolates from food processing plants. Abstr 112th Gen Meet Am Soc Microbiol, San Francisco, CA, 16 to 19 June 2012.
-
(2012)
Abstr 112th Gen Meet Am Soc Microbiol
-
-
Chen, Y.1
Li, C.2
Strain, E.A.3
Knabel, S.J.4
Allard, M.W.5
Brown, E.W.6
-
49
-
-
0036568566
-
Surface proteins and the pathogenic potential of Listeria monocytogenes
-
Cabanes D, Dehoux P, Dussurget O, Frangeul L, Cossart P. 2002. Surface proteins and the pathogenic potential of Listeria monocytogenes. Trends Microbiol 10:238-245. http://dx.doi.org/10.1016/S0966-842X (02)02342-9.
-
(2002)
Trends Microbiol
, vol.10
, pp. 238-245
-
-
Cabanes, D.1
Dehoux, P.2
Dussurget, O.3
Frangeul, L.4
Cossart, P.5
-
50
-
-
42449158530
-
Prophages in Listeria monocytogenes contain single-nucleotide polymorphisms that differentiate outbreak clones within epidemic clones
-
Chen Y, Knabel SJ. 2008. Prophages in Listeria monocytogenes contain single-nucleotide polymorphisms that differentiate outbreak clones within epidemic clones. J Clin Microbiol 46:1478-1484. http://dx.doi.org/10.1128/JCM.01873-07.
-
(2008)
J Clin Microbiol
, vol.46
, pp. 1478-1484
-
-
Chen, Y.1
Knabel, S.J.2
-
51
-
-
79958218670
-
comK prophage junction fragments as markers for Listeria monocytogenes genotypes unique to individual meat and poultry processing plants and a model for rapid niche-specific adaptation, biofilm formation, and persistence
-
Verghese B, Lok M, Wen J, Alessandria V, Chen Y, Kathariou S, Knabel S. 2011. comK prophage junction fragments as markers for Listeria monocytogenes genotypes unique to individual meat and poultry processing plants and a model for rapid niche-specific adaptation, biofilm formation, and persistence. Appl Environ Microbiol 77:3279-3292. http://dx.doi.org/10.1128/AEM.00546-11.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 3279-3292
-
-
Verghese, B.1
Lok, M.2
Wen, J.3
Alessandria, V.4
Chen, Y.5
Kathariou, S.6
Knabel, S.7
-
52
-
-
84892973554
-
The ubiquitous nature of Listeria monocytogenes clones: a large-scale multilocus sequence typing study
-
Haase JK, Didelot X, Lecuit M, Korkeala H, L. monocytogenes MLST Study Group, Achtman M. 2014. The ubiquitous nature of Listeria monocytogenes clones: a large-scale multilocus sequence typing study. Environ Microbiol 16:405-416. http://dx.doi.org/10.1111/1462-2920.12342.
-
(2014)
Environ Microbiol
, vol.16
, pp. 405-416
-
-
Haase, J.K.1
Didelot, X.2
Lecuit, M.3
Korkeala, H.4
Achtman, M.5
-
53
-
-
84959343949
-
Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity
-
Maury MM, Tsai YH, Charlier C, Touchon M, Chenal-Francisque V, Leclercq A, Criscuolo A, Gaultier C, Roussel S, Brisabois A, Disson O, Rocha EP, Brisse S, Lecuit M. 2016. Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity. Nat Genet 48:308-313. http://dx.doi.org/10.1038/ng.3501.
-
(2016)
Nat Genet
, vol.48
, pp. 308-313
-
-
Maury, M.M.1
Tsai, Y.H.2
Charlier, C.3
Touchon, M.4
Chenal-Francisque, V.5
Leclercq, A.6
Criscuolo, A.7
Gaultier, C.8
Roussel, S.9
Brisabois, A.10
Disson, O.11
Rocha, E.P.12
Brisse, S.13
Lecuit, M.14
-
54
-
-
0033846113
-
A small outbreak of listeriosis potentially linked to the consumption of imitation crab meat
-
Farber JM, Daley EM, MacKie MT, Limerick B. 2000. A small outbreak of listeriosis potentially linked to the consumption of imitation crab meat. Lett Appl Microbiol 31:100-104. http://dx.doi.org/10.1046/j.1365-2672.2000.00775.x.
-
(2000)
Lett Appl Microbiol
, vol.31
, pp. 100-104
-
-
Farber, J.M.1
Daley, E.M.2
MacKie, M.T.3
Limerick, B.4
-
55
-
-
84992738351
-
Prevalence and level of Listeria monocytogenes in ice cream linked to a listeriosis outbreak in the United States
-
Chen Y, Burall L, Macarisin D, Pouillot R, Strain E, De Jesus A, Laasri AM, Wang H, Ali A, Tatavarthy A, Zhang G, Hu L, Day J, Kang J, Sahu S, Srinivasan D, Klontz K, Parish M, Evans P, Brown EW, Hammack TS, Zink D, Datta A. 2016. Prevalence and level of Listeria monocytogenes in ice cream linked to a listeriosis outbreak in the United States. J Food Prot 79:1828-1832.
-
(2016)
J Food Prot
, vol.79
, pp. 1828-1832
-
-
Chen, Y.1
Burall, L.2
Macarisin, D.3
Pouillot, R.4
Strain, E.5
De Jesus, A.6
Laasri, A.M.7
Wang, H.8
Ali, A.9
Tatavarthy, A.10
Zhang, G.11
Hu, L.12
Day, J.13
Kang, J.14
Sahu, S.15
Srinivasan, D.16
Klontz, K.17
Parish, M.18
Evans, P.19
Brown, E.W.20
Hammack, T.S.21
Zink, D.22
Datta, A.23
more..
-
56
-
-
84922845793
-
Two outbreaks of Listeria monocytogenes infection, Northern Spain
-
Perez-Trallero E, Zigorraga C, Artieda J, Alkorta M, Marimon JM. 2014. Two outbreaks of Listeria monocytogenes infection, Northern Spain. Emerg Infect Dis 20:2155-2157. http://dx.doi.org/10.3201/eid2012.140993.
-
(2014)
Emerg Infect Dis
, vol.20
, pp. 2155-2157
-
-
Perez-Trallero, E.1
Zigorraga, C.2
Artieda, J.3
Alkorta, M.4
Marimon, J.M.5
|