CFSAN SNP pipeline: An automated method for constructing snp matrices fromnext-generation sequence data

PeerJ Computer Science

Volumn 2015, Issue 8, 2015, Pages

  Davis, Steve ^a   Pettengill, James B ^a   Luo, Yan ^a   Payne, Justin ^a   Shpuntoff, Al ^a   Rand, Hugh ^a   Strain, Errol ^a  

^a CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

Author keywords

Mapping,whole genome sequencing; Phylogenetics; Python; Single nucleotide polymorphism; Validation

Indexed keywords

COMPUTER SOFTWARE; FOOD SAFETY; GENES; HIGH LEVEL LANGUAGES; MAPPING; NUCLEOTIDES; PIPELINES; SALMONELLA;

PHYLOGENETICS; PYTHON; SINGLE NUCLEOTIDE POLYMORPHISMS; VALIDATION; WHOLE GENOME SEQUENCING;

MATRIX ALGEBRA;

EID: 84973504216     PISSN: None     EISSN: 23765992     Source Type: Journal    
DOI: 10.7717/peerj-cs.20     Document Type: Article

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