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Volumn 6, Issue 1, 2017, Pages

Convergent evolution of the arginine deiminase pathway: the ArcD and ArcE arginine/ornithine exchangers

Author keywords

ADI operon; ADI pathway; ArcD; ArcE; arginine ornithine exchange; citrulline

Indexed keywords

ARCD PROTEIN; ARCE PROTEIN; ARGININE; ARGININE DEIMINASE; ARGININE ORNITHINE EXCHANGE PROTEIN; CARRIER PROTEIN; CITRULLINE; ORNITHINE; UNCLASSIFIED DRUG; AMINO ACID TRANSPORTER; ANTIPORTER; ARCD PROTEIN, BACTERIA; BACTERIAL PROTEIN; HYDROLASE;

EID: 84996554967     PISSN: None     EISSN: 20458827     Source Type: Journal    
DOI: 10.1002/mbo3.412     Document Type: Article
Times cited : (24)

References (53)
  • 4
    • 84928139359 scopus 로고    scopus 로고
    • Crystal structure of the Alcanivorax borkumensis YdaH transporter reveals an unusual topology
    • Bolla, J. R., Su, C. C., Delmar, J. A., Radhakrishnan, A., Kumar, N., Chou, T. H., Long, F., et al. (2015). Crystal structure of the Alcanivorax borkumensis YdaH transporter reveals an unusual topology. Nature Communications, 6, 6874. doi:10.1038/ncomms7874
    • (2015) Nature Communications , vol.6 , pp. 6874
    • Bolla, J.R.1    Su, C.C.2    Delmar, J.A.3    Radhakrishnan, A.4    Kumar, N.5    Chou, T.H.6    Long, F.7
  • 5
    • 33749535579 scopus 로고    scopus 로고
    • Genetic structure and transcriptional analysis of the arginine deiminase (ADI) cluster in Lactococcus lactis MG1363
    • Budin-Verneuil, A., Maguin, E., Auffray, Y., Ehrlich, D. S., & Pichereau, V. (2006). Genetic structure and transcriptional analysis of the arginine deiminase (ADI) cluster in Lactococcus lactis MG1363. Canadian Journal of Microbiology, 52, 617–622.
    • (2006) Canadian Journal of Microbiology , vol.52 , pp. 617-622
    • Budin-Verneuil, A.1    Maguin, E.2    Auffray, Y.3    Ehrlich, D.S.4    Pichereau, V.5
  • 6
    • 0020314359 scopus 로고
    • Arginine metabolism in lactic streptococci
    • Crow, V. L., & Thomas, T. D. (1982). Arginine metabolism in lactic streptococci. Journal of Bacteriology, 150, 1024–1032.
    • (1982) Journal of Bacteriology , vol.150 , pp. 1024-1032
    • Crow, V.L.1    Thomas, T.D.2
  • 8
    • 0029757175 scopus 로고    scopus 로고
    • Controlled gene expression systems for Lactococcus lactis with the food-grade inducer nisin
    • De Ruyter, P. G., Kuipers, O. P., & de Vos, W. M. (1996). Controlled gene expression systems for Lactococcus lactis with the food-grade inducer nisin. Applied and Environment Microbiology, 62, 3662–3667.
    • (1996) Applied and Environment Microbiology , vol.62 , pp. 3662-3667
    • De Ruyter, P.G.1    Kuipers, O.P.2    de Vos, W.M.3
  • 9
    • 0023408787 scopus 로고
    • Arginine transport in Streptococcus lactis is catalyzed by a cationic exchanger
    • Driessen, A. J. M., Poolman, B., Kiewiet, R., & Konings, W. N. (1987). Arginine transport in Streptococcus lactis is catalyzed by a cationic exchanger. PNAS, 84, 6093–6097.
    • (1987) PNAS , vol.84 , pp. 6093-6097
    • Driessen, A.J.M.1    Poolman, B.2    Kiewiet, R.3    Konings, W.N.4
  • 11
    • 69249220125 scopus 로고    scopus 로고
    • Structure of a prokaryotic virtual proton pump at 3.2 Å resolution
    • Fang, Y., Jayaram, H., Shane, T., Kolmakova-Partensky, L., Wu, F., Williams, C., et al. (2009). Structure of a prokaryotic virtual proton pump at 3.2 Å resolution. Nature, 460, 1040–1043.
    • (2009) Nature , vol.460 , pp. 1040-1043
    • Fang, Y.1    Jayaram, H.2    Shane, T.3    Kolmakova-Partensky, L.4    Wu, F.5    Williams, C.6
  • 12
    • 70349979682 scopus 로고    scopus 로고
    • Origin and evolution of operons and metabolic pathways
    • Fondi, M., Emiliani, G., & Fani, R. (2009). Origin and evolution of operons and metabolic pathways. Research in Microbiology, 160, 502–512.
    • (2009) Research in Microbiology , vol.160 , pp. 502-512
    • Fondi, M.1    Emiliani, G.2    Fani, R.3
  • 13
    • 84884393580 scopus 로고    scopus 로고
    • Deletion of arcD in Streptococcus pneumoniae D39 impairs its capsule and attenuates virulence
    • Gupta, R., Yang, J., Dong, Y., Swiatlo, E., Zhang, J.-R., Metzger, D. W., & Bai, G. (2013). Deletion of arcD in Streptococcus pneumoniae D39 impairs its capsule and attenuates virulence. Infection and Immunity, 81, 3903–3911.
    • (2013) Infection and Immunity , vol.81 , pp. 3903-3911
    • Gupta, R.1    Yang, J.2    Dong, Y.3    Swiatlo, E.4    Zhang, J.-R.5    Metzger, D.W.6    Bai, G.7
  • 14
    • 0033886562 scopus 로고    scopus 로고
    • The amino acid/polyamine/organocation (APC) superfamily of transporters specific for amino acids, polyamines and organocations
    • Jack, D. L., Paulsen, I. T., & Saier, M. H. Jr (2000). The amino acid/polyamine/organocation (APC) superfamily of transporters specific for amino acids, polyamines and organocations. Microbiology, 146, 1797–1814.
    • (2000) Microbiology , vol.146 , pp. 1797-1814
    • Jack, D.L.1    Paulsen, I.T.2    Saier, M.H.3
  • 15
    • 0020534631 scopus 로고
    • Amino acid degradation by a Lactobacillus plantarum strain from fish
    • Jonsson, S., Clausen, E., & Raa, J. (1983). Amino acid degradation by a Lactobacillus plantarum strain from fish. Systematic and Applied Microbiology, 4, 148–154.
    • (1983) Systematic and Applied Microbiology , vol.4 , pp. 148-154
    • Jonsson, S.1    Clausen, E.2    Raa, J.3
  • 17
    • 1142286472 scopus 로고    scopus 로고
    • ArgR and AhrC are both required for regulation of arginine metabolism in Lactococcus lactis
    • Larsen, R., Buist, G., Kuipers, O. P., & Kok, J. (2004). ArgR and AhrC are both required for regulation of arginine metabolism in Lactococcus lactis. Journal of Bacteriology, 186, 1147–1157.
    • (2004) Journal of Bacteriology , vol.186 , pp. 1147-1157
    • Larsen, R.1    Buist, G.2    Kuipers, O.P.3    Kok, J.4
  • 18
    • 0031944993 scopus 로고    scopus 로고
    • A review: Arginine metabolism in wine lactic acid bacteria and tis practical significance
    • Liu, S. -Q., & Liu, S. -Q. (1998). A review: Arginine metabolism in wine lactic acid bacteria and tis practical significance. Journal of Applied Microbiology, 84, 315–327.
    • (1998) Journal of Applied Microbiology , vol.84 , pp. 315-327
    • Liu, S.-Q.1    Liu, S.-Q.2
  • 19
    • 0029848589 scopus 로고    scopus 로고
    • Arginine catabolism in wine lactic acid bacteria: Is it via the arginine deiminase pathway or the arginase-urease pathway?
    • Liu, S. -Q., Pritchard, G. G., Hardman, M. J., & Liu, S.-Q. (1996). Arginine catabolism in wine lactic acid bacteria: Is it via the arginine deiminase pathway or the arginase-urease pathway? Journal of Applied Bacteriology, 81, 486–492.
    • (1996) Journal of Applied Bacteriology , vol.81 , pp. 486-492
    • Liu, S.-Q.1    Pritchard, G.G.2    Hardman, M.J.3    Liu, S.-Q.4
  • 20
    • 0028156435 scopus 로고
    • Citrulline production and ethyl carbamate (urethane) precursor formation from arginine degradation by wine lactic acid bacteria Leuconostoc oenos and Lactobacillus buchneri
    • Liu, S. -Q., Pritchard, G. G., Hardman, M. J., & Pilone, G. J. (1994). Citrulline production and ethyl carbamate (urethane) precursor formation from arginine degradation by wine lactic acid bacteria Leuconostoc oenos and Lactobacillus buchneri. American Journal of Enology and Viticulture, 45, 235–242.
    • (1994) American Journal of Enology and Viticulture , vol.45 , pp. 235-242
    • Liu, S.-Q.1    Pritchard, G.G.2    Hardman, M.J.3    Pilone, G.J.4
  • 21
    • 85011795589 scopus 로고    scopus 로고
    • Estimation of structural similarity of membrane proteins by hydrophatic character of a protein
    • Lolkema, J. S., & Slotboom, D. -J. (1998). Estimation of structural similarity of membrane proteins by hydrophatic character of a protein. Journal of Molecular Biology, 157, 105–132.
    • (1998) Journal of Molecular Biology , vol.157 , pp. 105-132
    • Lolkema, J.S.1    Slotboom, D.-J.2
  • 22
    • 0037432531 scopus 로고    scopus 로고
    • Classification of 29 families of secondary transport proteins into a single structural class using hydropathy profile analysis
    • Lolkema, J. S., & Slotboom, D. -J. (2003). Classification of 29 families of secondary transport proteins into a single structural class using hydropathy profile analysis. Journal of Molecular Biology, 327, 901–909.
    • (2003) Journal of Molecular Biology , vol.327 , pp. 901-909
    • Lolkema, J.S.1    Slotboom, D.-J.2
  • 24
    • 84862819559 scopus 로고    scopus 로고
    • Structure and mechanism of a glutamate-GABA antiporter
    • Ma, D., Lu, P., Yan, C., Fan, C., Yin, P., Wang, J., & Shi, Y. (2012). Structure and mechanism of a glutamate-GABA antiporter. Nature, 483, 632–636.
    • (2012) Nature , vol.483 , pp. 632-636
    • Ma, D.1    Lu, P.2    Yan, C.3    Fan, C.4    Yin, P.5    Wang, J.6    Shi, Y.7
  • 26
    • 84869884515 scopus 로고    scopus 로고
    • Structure and mechanism of a bacterial sodium-dependent dicarboxylate transporter
    • Mancusso, R., Gregorio, G. G., Liu, Q., & Wang, D. N. (2012). Structure and mechanism of a bacterial sodium-dependent dicarboxylate transporter. Nature, 491, 622–626.
    • (2012) Nature , vol.491 , pp. 622-626
    • Mancusso, R.1    Gregorio, G.G.2    Liu, Q.3    Wang, D.N.4
  • 28
    • 61849136779 scopus 로고    scopus 로고
    • Recurring cluster and operon assembly for phenylacetate degradation genes
    • Martin, F. J., & McInerney, J. O. (2009). Recurring cluster and operon assembly for phenylacetate degradation genes. BMC Evolutionary Biology, 9, 36. doi:10.1186/1471-2148-9-36
    • (2009) BMC Evolutionary Biology , vol.9 , pp. 36
    • Martin, F.J.1    McInerney, J.O.2
  • 30
    • 84944605618 scopus 로고    scopus 로고
    • ArcD1 and ArcD2 arginine/ornithine exchangers encoded in the arginine deiminase pathway gene cluster of Lactococcus lactis
    • Noens, E. E. E., Kaczmarek, M. B., Żygo, M., & Lolkema, J. S. (2015). ArcD1 and ArcD2 arginine/ornithine exchangers encoded in the arginine deiminase pathway gene cluster of Lactococcus lactis. Journal of Bacteriology, 197, 3545–3553.
    • (2015) Journal of Bacteriology , vol.197 , pp. 3545-3553
    • Noens, E.E.E.1    Kaczmarek, M.B.2    Żygo, M.3    Lolkema, J.S.4
  • 31
    • 84922203996 scopus 로고    scopus 로고
    • Physiology and substrate specificity of two closely related amino acid transporters, SerP1 and SerP2, in Lactococcus lactis
    • Noens, E. E. E., & Lolkema, J. S. (2015). Physiology and substrate specificity of two closely related amino acid transporters, SerP1 and SerP2, in Lactococcus lactis. Journal of Bacteriology, 197, 951–958.
    • (2015) Journal of Bacteriology , vol.197 , pp. 951-958
    • Noens, E.E.E.1    Lolkema, J.S.2
  • 35
    • 84875376378 scopus 로고    scopus 로고
    • A putative transport protein is involved in citrulline excretion and re-uptake during arginine deiminase pathway activity in Lactobacillus sakei
    • Rimaux, T., Rivière, A., Hebert, E. M., Mozzi, F., Weckx, S., De Vuyst, L., & Leroy, F. (2013). A putative transport protein is involved in citrulline excretion and re-uptake during arginine deiminase pathway activity in Lactobacillus sakei. Research in Microbiology, 164, 216–225.
    • (2013) Research in Microbiology , vol.164 , pp. 216-225
    • Rimaux, T.1    Rivière, A.2    Hebert, E.M.3    Mozzi, F.4    Weckx, S.5    De Vuyst, L.6    Leroy, F.7
  • 36
    • 0028926047 scopus 로고
    • Energetics of bacterial growth: Balance of anabolic and catabolic reactions
    • Russel, J. B., & Cook, G. M. (1995). Energetics of bacterial growth: Balance of anabolic and catabolic reactions. Microbiological Reviews, 59, 48–62.
    • (1995) Microbiological Reviews , vol.59 , pp. 48-62
    • Russel, J.B.1    Cook, G.M.2
  • 37
    • 0343603660 scopus 로고    scopus 로고
    • A functional-phylogenetic classification system for transmembrane solute transporters
    • Saier, M. H. Jr (2000). A functional-phylogenetic classification system for transmembrane solute transporters. Microbiology and Molecular Biology Reviews, 64, 354–411.
    • (2000) Microbiology and Molecular Biology Reviews , vol.64 , pp. 354-411
    • Saier, M.H.1
  • 38
    • 0006961120 scopus 로고
    • Arginine metabolism in pleuropneumonialike organisms isolated from mammalian cell culture
    • Schimke, R. T., & Barile, M. F. (1963). Arginine metabolism in pleuropneumonialike organisms isolated from mammalian cell culture. Journal of Bacteriology, 86, 195–206.
    • (1963) Journal of Bacteriology , vol.86 , pp. 195-206
    • Schimke, R.T.1    Barile, M.F.2
  • 39
    • 84920996729 scopus 로고    scopus 로고
    • Regulation of the arginine deiminase system by ArgR2 interferes with arginine metabolsim and fitness of Streptococcus pneumoniae
    • Schulz, C., Gierok, P., Petruschka, L., Lalk, M., Der Mä, U., & Hammerschmidt, S. (2014). Regulation of the arginine deiminase system by ArgR2 interferes with arginine metabolsim and fitness of Streptococcus pneumoniae. mBio, 5, e01858–14. doi:10.1128/mBio.01858-14
    • (2014) mBio , vol.5 , pp. 1814-1858
    • Schulz, C.1    Gierok, P.2    Petruschka, L.3    Lalk, M.4    Der Mä, U.5    Hammerschmidt, S.6
  • 41
    • 80054078476 scopus 로고    scopus 로고
    • Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
    • Sievers, F., Wilm, A., Dineen, D. G., Gibson, T. J., Karplus, K., Li, W., et al. (2011). Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Molecular Systems Biology, 7, 539. doi:10.1038/msb.2011.75
    • (2011) Molecular Systems Biology , vol.7 , pp. 539
    • Sievers, F.1    Wilm, A.2    Dineen, D.G.3    Gibson, T.J.4    Karplus, K.5    Li, W.6
  • 42
    • 0020315318 scopus 로고
    • Control of enzyme synthesis in the arginine deiminase pathway of Streptococcus faecalis
    • Simon, J.-P., Wargnies, B., & Stalon, V. (1982). Control of enzyme synthesis in the arginine deiminase pathway of Streptococcus faecalis. Journal of Bacteriology, 150, 1085–1090.
    • (1982) Journal of Bacteriology , vol.150 , pp. 1085-1090
    • Simon, J.-P.1    Wargnies, B.2    Stalon, V.3
  • 43
    • 84927692255 scopus 로고    scopus 로고
    • Structure and function of Neisseria gonorrhoeae MtrF illuminates a class of antimetabolite efflux pumps
    • Su, C. C., Bolla, J. R., Kumar, N., Radhakrishnan, A., Long, F., Delmar, J. A., et al. (2015). Structure and function of Neisseria gonorrhoeae MtrF illuminates a class of antimetabolite efflux pumps. Cell Reports, 11, 61–70.
    • (2015) Cell Reports , vol.11 , pp. 61-70
    • Su, C.C.1    Bolla, J.R.2    Kumar, N.3    Radhakrishnan, A.4    Long, F.5    Delmar, J.A.6
  • 44
    • 0027121369 scopus 로고
    • Physiological and energetic aspects of bacterial metabolite overproduction
    • Tempest, D. W., & Neijssel, O. M. (1992). Physiological and energetic aspects of bacterial metabolite overproduction. FEMS Microbiology Letters, 100, 169–176.
    • (1992) FEMS Microbiology Letters , vol.100 , pp. 169-176
    • Tempest, D.W.1    Neijssel, O.M.2
  • 45
    • 84872130897 scopus 로고    scopus 로고
    • Cloning, expression and functional characterization of secondary amino acid transporters of Lactococcus lactis
    • Trip, H., Mulder, N. L., & Lolkema, J. S. (2013). Cloning, expression and functional characterization of secondary amino acid transporters of Lactococcus lactis. Journal of Bacteriology, 195, 340–350.
    • (2013) Journal of Bacteriology , vol.195 , pp. 340-350
    • Trip, H.1    Mulder, N.L.2    Lolkema, J.S.3
  • 46
    • 0026574202 scopus 로고
    • arcD, the first gene of the arc operon for anaerobic arginine catabolism in Pseudomonas aeruginosa, encodes an arginine-ornithine exchanger
    • Verhoogt, H. J. C., Smit, H., Abee, T., Gamper, M., Driessen, A. J. M., Haas, D., & Konings, W. N. (1992). arcD, the first gene of the arc operon for anaerobic arginine catabolism in Pseudomonas aeruginosa, encodes an arginine-ornithine exchanger. Journal of Bacteriology, 174, 1568–1573.
    • (1992) Journal of Bacteriology , vol.174 , pp. 1568-1573
    • Verhoogt, H.J.C.1    Smit, H.2    Abee, T.3    Gamper, M.4    Driessen, A.J.M.5    Haas, D.6    Konings, W.N.7
  • 47
  • 48
    • 55349092991 scopus 로고    scopus 로고
    • Structure and molecular mechanism of a nucleobase-cation-symport-1 family transporter
    • Weyand, S., Shimamura, T., Yajima, S., Suzuki, S., Mirza, O., Krusong, K., et al. (2008). Structure and molecular mechanism of a nucleobase-cation-symport-1 family transporter. Science, 322, 709–713.
    • (2008) Science , vol.322 , pp. 709-713
    • Weyand, S.1    Shimamura, T.2    Yajima, S.3    Suzuki, S.4    Mirza, O.5    Krusong, K.6
  • 49
    • 84954358413 scopus 로고    scopus 로고
    • Identification of the arginine/ornithine antiporter ArcD from Halobacterium salinarum
    • Wimmer, F., Oberwinkler, T., Bisle, B., Tittor, J., & Oesterhelt, D. (2008). Identification of the arginine/ornithine antiporter ArcD from Halobacterium salinarum. FEBS Letters, 582, 3771–3775.
    • (2008) FEBS Letters , vol.582 , pp. 3771-3775
    • Wimmer, F.1    Oberwinkler, T.2    Bisle, B.3    Tittor, J.4    Oesterhelt, D.5
  • 51
    • 0016320085 scopus 로고
    • Continuous production of L-citrulline by immobilized Pseudomonas putida cells
    • Yamamoto, K., Sato, T., Tosa, T., & Chibata, I. (1974). Continuous production of L-citrulline by immobilized Pseudomonas putida cells. Biotechnology and Bioengineering, 26, 1589–1599.
    • (1974) Biotechnology and Bioengineering , vol.26 , pp. 1589-1599
    • Yamamoto, K.1    Sato, T.2    Tosa, T.3    Chibata, I.4


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