메뉴 건너뛰기




Volumn 64, Issue 3, 2016, Pages 534-548

Unusual Processing Generates SPA LncRNAs that Sequester Multiple RNA Binding Proteins

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA AMANITIN; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN GROUP M; LONG UNTRANSLATED RNA; MESSENGER RNA; MESSENGER RNA PRECURSOR; POLYADENYLATED RNA; RBFOX2 PROTEIN; RNA BINDING PROTEIN; SMALL NUCLEOLAR RIBONUCLEOPROTEIN; SMALL NUCLEOLAR RNA; TAR DNA BINDING PROTEIN; UNCLASSIFIED DRUG; DNA BINDING PROTEIN; EXORIBONUCLEASE; PROTEIN BINDING; RBFOX2 PROTEIN, HUMAN; REPRESSOR PROTEIN; RNA POLYMERASE II; RNA SPLICING FACTOR; TDP-43 PROTEIN, HUMAN; XRN2 PROTEIN, HUMAN;

EID: 84995495837     PISSN: 10972765     EISSN: 10974164     Source Type: Journal    
DOI: 10.1016/j.molcel.2016.10.007     Document Type: Article
Times cited : (120)

References (51)
  • 1
    • 37549056263 scopus 로고    scopus 로고
    • snoTARGET shows that human orphan snoRNA targets locate close to alternative splice junctions
    • Bazeley, P.S., Shepelev, V., Talebizadeh, Z., Butler, M.G., Fedorova, L., Filatov, V., Fedorov, A., snoTARGET shows that human orphan snoRNA targets locate close to alternative splice junctions. Gene 408 (2008), 172–179.
    • (2008) Gene , vol.408 , pp. 172-179
    • Bazeley, P.S.1    Shepelev, V.2    Talebizadeh, Z.3    Butler, M.G.4    Fedorova, L.5    Filatov, V.6    Fedorov, A.7
  • 3
    • 0032103829 scopus 로고    scopus 로고
    • Gene clusters and polycistronic transcription in eukaryotes
    • Blumenthal, T., Gene clusters and polycistronic transcription in eukaryotes. BioEssays 20 (1998), 480–487.
    • (1998) BioEssays , vol.20 , pp. 480-487
    • Blumenthal, T.1
  • 5
    • 84881496188 scopus 로고    scopus 로고
    • Synaptic state-dependent functional interplay between postsynaptic density-95 and synapse-associated protein 102
    • Bonnet, S.A.D., Akad, D.S., Samaddar, T., Liu, Y., Huang, X., Dong, Y., Schlüter, O.M., Synaptic state-dependent functional interplay between postsynaptic density-95 and synapse-associated protein 102. J. Neurosci. 33 (2013), 13398–13409.
    • (2013) J. Neurosci. , vol.33 , pp. 13398-13409
    • Bonnet, S.A.D.1    Akad, D.S.2    Samaddar, T.3    Liu, Y.4    Huang, X.5    Dong, Y.6    Schlüter, O.M.7
  • 6
    • 84900468373 scopus 로고    scopus 로고
    • The many faces of small nucleolar RNAs
    • Bratkovič, T., Rogelj, B., The many faces of small nucleolar RNAs. Biochim. Biophys. Acta 1839 (2014), 438–443.
    • (2014) Biochim. Biophys. Acta , vol.1839 , pp. 438-443
    • Bratkovič, T.1    Rogelj, B.2
  • 7
    • 84894177433 scopus 로고    scopus 로고
    • A bicistronic MAVS transcript highlights a class of truncated variants in antiviral immunity
    • Brubaker, S.W., Gauthier, A.E., Mills, E.W., Ingolia, N.T., Kagan, J.C., A bicistronic MAVS transcript highlights a class of truncated variants in antiviral immunity. Cell 156 (2014), 800–811.
    • (2014) Cell , vol.156 , pp. 800-811
    • Brubaker, S.W.1    Gauthier, A.E.2    Mills, E.W.3    Ingolia, N.T.4    Kagan, J.C.5
  • 8
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili, M.N., Trapnell, C., Goff, L., Koziol, M., Tazon-Vega, B., Regev, A., Rinn, J.L., Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 25 (2011), 1915–1927.
    • (2011) Genes Dev. , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 11
    • 84896983805 scopus 로고    scopus 로고
    • hnRNP M facilitates exon 7 inclusion of SMN2 pre-mRNA in spinal muscular atrophy by targeting an enhancer on exon 7
    • Cho, S., Moon, H., Loh, T.J., Oh, H.K., Cho, S., Choy, H.E., Song, W.K., Chun, J.S., Zheng, X., Shen, H., hnRNP M facilitates exon 7 inclusion of SMN2 pre-mRNA in spinal muscular atrophy by targeting an enhancer on exon 7. Biochim. Biophys. Acta 1839 (2014), 306–315.
    • (2014) Biochim. Biophys. Acta , vol.1839 , pp. 306-315
    • Cho, S.1    Moon, H.2    Loh, T.J.3    Oh, H.K.4    Cho, S.5    Choy, H.E.6    Song, W.K.7    Chun, J.S.8    Zheng, X.9    Shen, H.10
  • 12
    • 73849107519 scopus 로고    scopus 로고
    • Regulation of mRNA cap methylation
    • Cowling, V.H., Regulation of mRNA cap methylation. Biochem. J. 425 (2009), 295–302.
    • (2009) Biochem. J. , vol.425 , pp. 295-302
    • Cowling, V.H.1
  • 14
    • 45849144806 scopus 로고    scopus 로고
    • SnoRNA Snord116 (Pwcr1/MBII-85) deletion causes growth deficiency and hyperphagia in mice
    • Ding, F., Li, H.H., Zhang, S., Solomon, N.M., Camper, S.A., Cohen, P., Francke, U., SnoRNA Snord116 (Pwcr1/MBII-85) deletion causes growth deficiency and hyperphagia in mice. PLoS ONE, 3, 2008, e1709.
    • (2008) PLoS ONE , vol.3 , pp. e1709
    • Ding, F.1    Li, H.H.2    Zhang, S.3    Solomon, N.M.4    Camper, S.A.5    Cohen, P.6    Francke, U.7
  • 16
    • 0036591884 scopus 로고    scopus 로고
    • Biogenesis of small nucleolar ribonucleoproteins
    • Filipowicz, W., Pogacić, V., Biogenesis of small nucleolar ribonucleoproteins. Curr. Opin. Cell Biol. 14 (2002), 319–327.
    • (2002) Curr. Opin. Cell Biol. , vol.14 , pp. 319-327
    • Filipowicz, W.1    Pogacić, V.2
  • 18
    • 84944887484 scopus 로고    scopus 로고
    • Effects of Transcription Elongation Rate and Xrn2 Exonuclease Activity on RNA Polymerase II Termination Suggest Widespread Kinetic Competition
    • Fong, N., Brannan, K., Erickson, B., Kim, H., Cortazar, M.A., Sheridan, R.M., Nguyen, T., Karp, S., Bentley, D.L., Effects of Transcription Elongation Rate and Xrn2 Exonuclease Activity on RNA Polymerase II Termination Suggest Widespread Kinetic Competition. Mol. Cell 60 (2015), 256–267.
    • (2015) Mol. Cell , vol.60 , pp. 256-267
    • Fong, N.1    Brannan, K.2    Erickson, B.3    Kim, H.4    Cortazar, M.A.5    Sheridan, R.M.6    Nguyen, T.7    Karp, S.8    Bentley, D.L.9
  • 20
    • 0033545993 scopus 로고    scopus 로고
    • An imprinted, mammalian bicistronic transcript encodes two independent proteins
    • Gray, T.A., Saitoh, S., Nicholls, R.D., An imprinted, mammalian bicistronic transcript encodes two independent proteins. Proc. Natl. Acad. Sci. USA 96 (1999), 5616–5621.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 5616-5621
    • Gray, T.A.1    Saitoh, S.2    Nicholls, R.D.3
  • 22
    • 84863856685 scopus 로고    scopus 로고
    • RIM genes differentially contribute to organizing presynaptic release sites
    • Kaeser, P.S., Deng, L., Fan, M., Südhof, T.C., RIM genes differentially contribute to organizing presynaptic release sites. Proc. Natl. Acad. Sci. USA 109 (2012), 11830–11835.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 11830-11835
    • Kaeser, P.S.1    Deng, L.2    Fan, M.3    Südhof, T.C.4
  • 23
    • 0035824548 scopus 로고    scopus 로고
    • Critical role of cAMP-GEFII-Rim2 complex in incretin-potentiated insulin secretion
    • Kashima, Y., Miki, T., Shibasaki, T., Ozaki, N., Miyazaki, M., Yano, H., Seino, S., Critical role of cAMP-GEFII-Rim2 complex in incretin-potentiated insulin secretion. J. Biol. Chem. 276 (2001), 46046–46053.
    • (2001) J. Biol. Chem. , vol.276 , pp. 46046-46053
    • Kashima, Y.1    Miki, T.2    Shibasaki, T.3    Ozaki, N.4    Miyazaki, M.5    Yano, H.6    Seino, S.7
  • 26
    • 0035898634 scopus 로고    scopus 로고
    • Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs
    • Kiss, T., Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs. EMBO J. 20 (2001), 3617–3622.
    • (2001) EMBO J. , vol.20 , pp. 3617-3622
    • Kiss, T.1
  • 29
    • 33845902048 scopus 로고    scopus 로고
    • Polyadenylation factor CPSF-73 is the pre-mRNA 3′-end-processing endonuclease
    • Mandel, C.R., Kaneko, S., Zhang, H., Gebauer, D., Vethantham, V., Manley, J.L., Tong, L., Polyadenylation factor CPSF-73 is the pre-mRNA 3′-end-processing endonuclease. Nature 444 (2006), 953–956.
    • (2006) Nature , vol.444 , pp. 953-956
    • Mandel, C.R.1    Kaneko, S.2    Zhang, H.3    Gebauer, D.4    Vethantham, V.5    Manley, J.L.6    Tong, L.7
  • 30
    • 33847187076 scopus 로고    scopus 로고
    • Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs
    • Matera, A.G., Terns, R.M., Terns, M.P., Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs. Nat. Rev. Mol. Cell Biol. 8 (2007), 209–220.
    • (2007) Nat. Rev. Mol. Cell Biol. , vol.8 , pp. 209-220
    • Matera, A.G.1    Terns, R.M.2    Terns, M.P.3
  • 31
    • 79960135469 scopus 로고    scopus 로고
    • Regulatory roles of heterogeneous nuclear ribonucleoprotein M and Nova-1 protein in alternative splicing of dopamine D2 receptor pre-mRNA
    • Park, E., Iaccarino, C., Lee, J., Kwon, I., Baik, S.M., Kim, M., Seong, J.Y., Son, G.H., Borrelli, E., Kim, K., Regulatory roles of heterogeneous nuclear ribonucleoprotein M and Nova-1 protein in alternative splicing of dopamine D2 receptor pre-mRNA. J. Biol. Chem. 286 (2011), 25301–25308.
    • (2011) J. Biol. Chem. , vol.286 , pp. 25301-25308
    • Park, E.1    Iaccarino, C.2    Lee, J.3    Kwon, I.4    Baik, S.M.5    Kim, M.6    Seong, J.Y.7    Son, G.H.8    Borrelli, E.9    Kim, K.10
  • 32
    • 84888878912 scopus 로고    scopus 로고
    • N-glycosylation requirements in neuromuscular synaptogenesis
    • Parkinson, W., Dear, M.L., Rushton, E., Broadie, K., N-glycosylation requirements in neuromuscular synaptogenesis. Development 140 (2013), 4970–4981.
    • (2013) Development , vol.140 , pp. 4970-4981
    • Parkinson, W.1    Dear, M.L.2    Rushton, E.3    Broadie, K.4
  • 33
    • 33745178478 scopus 로고    scopus 로고
    • Terminating the transcript: breaking up is hard to do
    • Rosonina, E., Kaneko, S., Manley, J.L., Terminating the transcript: breaking up is hard to do. Genes Dev. 20 (2006), 1050–1056.
    • (2006) Genes Dev. , vol.20 , pp. 1050-1056
    • Rosonina, E.1    Kaneko, S.2    Manley, J.L.3
  • 34
    • 0029165020 scopus 로고
    • mRNA stability in mammalian cells
    • Ross, J., mRNA stability in mammalian cells. Microbiol. Rev. 59 (1995), 423–450.
    • (1995) Microbiol. Rev. , vol.59 , pp. 423-450
    • Ross, J.1
  • 35
    • 0035509699 scopus 로고    scopus 로고
    • The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A
    • Runte, M., Hüttenhofer, A., Gross, S., Kiefmann, M., Horsthemke, B., Buiting, K., The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. Hum. Mol. Genet. 10 (2001), 2687–2700.
    • (2001) Hum. Mol. Genet. , vol.10 , pp. 2687-2700
    • Runte, M.1    Hüttenhofer, A.2    Gross, S.3    Kiefmann, M.4    Horsthemke, B.5    Buiting, K.6
  • 37
    • 84903217296 scopus 로고    scopus 로고
    • Multiplex genome engineering in human cells using all-in-one CRISPR/Cas9 vector system
    • Sakuma, T., Nishikawa, A., Kume, S., Chayama, K., Yamamoto, T., Multiplex genome engineering in human cells using all-in-one CRISPR/Cas9 vector system. Sci. Rep., 4, 2014, 5400.
    • (2014) Sci. Rep. , vol.4 , pp. 5400
    • Sakuma, T.1    Nishikawa, A.2    Kume, S.3    Chayama, K.4    Yamamoto, T.5
  • 40
    • 0032837539 scopus 로고    scopus 로고
    • Paternal deletion from Snrpn to Ube3a in the mouse causes hypotonia, growth retardation and partial lethality and provides evidence for a gene contributing to Prader-Willi syndrome
    • Tsai, T.F., Jiang, Y.H., Bressler, J., Armstrong, D., Beaudet, A.L., Paternal deletion from Snrpn to Ube3a in the mouse causes hypotonia, growth retardation and partial lethality and provides evidence for a gene contributing to Prader-Willi syndrome. Hum. Mol. Genet. 8 (1999), 1357–1364.
    • (1999) Hum. Mol. Genet. , vol.8 , pp. 1357-1364
    • Tsai, T.F.1    Jiang, Y.H.2    Bressler, J.3    Armstrong, D.4    Beaudet, A.L.5
  • 41
    • 84455206362 scopus 로고    scopus 로고
    • Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
    • Ulitsky, I., Shkumatava, A., Jan, C.H., Sive, H., Bartel, D.P., Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell 147 (2011), 1537–1550.
    • (2011) Cell , vol.147 , pp. 1537-1550
    • Ulitsky, I.1    Shkumatava, A.2    Jan, C.H.3    Sive, H.4    Bartel, D.P.5
  • 44
    • 9644308046 scopus 로고    scopus 로고
    • Human 5′-> 3′ exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites
    • West, S., Gromak, N., Proudfoot, N.J., Human 5′-> 3′ exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites. Nature 432 (2004), 522–525.
    • (2004) Nature , vol.432 , pp. 522-525
    • West, S.1    Gromak, N.2    Proudfoot, N.J.3
  • 45
    • 0031040496 scopus 로고    scopus 로고
    • An imprinted mouse transcript homologous to the human imprinted in Prader-Willi syndrome (IPW) gene
    • Wevrick, R., Francke, U., An imprinted mouse transcript homologous to the human imprinted in Prader-Willi syndrome (IPW) gene. Hum. Mol. Genet. 6 (1997), 325–332.
    • (1997) Hum. Mol. Genet. , vol.6 , pp. 325-332
    • Wevrick, R.1    Francke, U.2
  • 46
    • 84897051164 scopus 로고    scopus 로고
    • HITS-CLIP and integrative modeling define the Rbfox splicing-regulatory network linked to brain development and autism
    • Weyn-Vanhentenryck, S.M., Mele, A., Yan, Q., Sun, S., Farny, N., Zhang, Z., Xue, C., Herre, M., Silver, P.A., Zhang, M.Q., et al. HITS-CLIP and integrative modeling define the Rbfox splicing-regulatory network linked to brain development and autism. Cell Rep. 6 (2014), 1139–1152.
    • (2014) Cell Rep. , vol.6 , pp. 1139-1152
    • Weyn-Vanhentenryck, S.M.1    Mele, A.2    Yan, Q.3    Sun, S.4    Farny, N.5    Zhang, Z.6    Xue, C.7    Herre, M.8    Silver, P.A.9    Zhang, M.Q.10
  • 47
    • 78650051022 scopus 로고    scopus 로고
    • Induced pluripotent stem cells can be used to model the genomic imprinting disorder Prader-Willi syndrome
    • Yang, J., Cai, J., Zhang, Y., Wang, X., Li, W., Xu, J., Li, F., Guo, X., Deng, K., Zhong, M., et al. Induced pluripotent stem cells can be used to model the genomic imprinting disorder Prader-Willi syndrome. J. Biol. Chem. 285 (2010), 40303–40311.
    • (2010) J. Biol. Chem. , vol.285 , pp. 40303-40311
    • Yang, J.1    Cai, J.2    Zhang, Y.3    Wang, X.4    Li, W.5    Xu, J.6    Li, F.7    Guo, X.8    Deng, K.9    Zhong, M.10
  • 48
    • 59649107040 scopus 로고    scopus 로고
    • An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells
    • Yeo, G.W., Coufal, N.G., Liang, T.Y., Peng, G.E., Fu, X.D., Gage, F.H., An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells. Nat. Struct. Mol. Biol. 16 (2009), 130–137.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 130-137
    • Yeo, G.W.1    Coufal, N.G.2    Liang, T.Y.3    Peng, G.E.4    Fu, X.D.5    Gage, F.H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.