-
3
-
-
79959321435
-
-
Food safety modernization act (FSMA) Silver Spring, MD, USA, Public Law
-
"Food safety modernization act (FSMA)," US Food Drug Admin, Silver Spring, MD, USA, Public Law 111-353, 2011
-
(2011)
US Food Drug Admin
, pp. 111-353
-
-
-
4
-
-
84882279100
-
Genomic paradigms for food-borne enteric pathogen analysis at the USFDA Case studies highlighting method utility, integration and resolution
-
C A Elkins, M L Kotewicz, S A Jackson, D W Lacher, G S Abu-Ali, and I R Patel, "Genomic paradigms for food-borne enteric pathogen analysis at the USFDA Case studies highlighting method utility, integration and resolution," Food Additives Contaminants, A Chem Anal Control Expo Risk Assess, vol 30, pp 1422-36, 2013
-
(2013)
Food Additives Contaminants, A Chem Anal Control Expo Risk Assess
, vol.30
, pp. 1422-1436
-
-
Elkins, C.A.1
Kotewicz, M.L.2
Jackson, S.A.3
Lacher, D.W.4
Abu-Ali, G.S.5
Patel, I.R.6
-
5
-
-
84946077037
-
Application of metagenomic sequencing to food safety Detection of Shiga toxin-producing Escherichia coli on fresh bagged spinach
-
S R Leonard, M K Mammel, D W Lacher, and C A Elkins, "Application of metagenomic sequencing to food safety Detection of shiga toxin-producing escherichia coli on fresh bagged spinach," Appl Environ Microbiol, vol 81, pp 8183-91, 2015
-
(2015)
Appl Environ Microbiol
, vol.81
, pp. 8183-8191
-
-
Leonard, S.R.1
Mammel, M.K.2
Lacher, D.W.3
Elkins, C.A.4
-
6
-
-
84899928574
-
Omics approaches in food safety Fulfilling the promise?
-
T M Bergholz, A I Moreno Switt, and M Wiedmann, "Omics approaches in food safety Fulfilling the promise?" Trends Microbiol, vol 22, pp 275-281, 2014
-
(2014)
Trends Microbiol
, vol.22
, pp. 275-281
-
-
Bergholz, T.M.1
Moreno Switt, A.I.2
Wiedmann, M.3
-
7
-
-
84945448224
-
-
New York Times, New York, NY, USA, Feb 3
-
A OConnor, "New York attorney general targets supplements at major retailers," New York Times, New York, NY, USA, Feb 3, 2015 [Online] Available http//well.blogs.nytimes.com/2015/02/03/new-york-attorney-general-targets-supplements-at-major-retailers
-
(2015)
New York Attorney General Targets Supplements at Major Retailers
-
-
O'Connor, A.1
-
8
-
-
84929503123
-
Development and utility of the FDA GutProbe DNA microarray for identification, genotyping and metagenomic analysis of commercially available probiotics
-
J N Patro, P Ramachandran, J L Lewis, M K Mammel, T Barnaba, E A Pfeiler, and C A Elkins, "Development and utility of the FDA GutProbe DNA microarray for identification, genotyping and metagenomic analysis of commercially available probiotics," J Appl Microbiol, vol 118, pp 1478-88, 2015.
-
(2015)
J Appl Microbiol
, vol.118
, pp. 1478-1488
-
-
Patro, J.N.1
Ramachandran, P.2
Lewis, J.L.3
Mammel, M.K.4
Barnaba, T.5
Pfeiler, E.A.6
Elkins, C.A.7
-
9
-
-
84994490329
-
Culture-independent metagenomic surveillance of commercially available probiotics with high-throughput next-generation sequencing
-
Mar-Apr Art no e00057-16 doi 10 1128/ mSphere 00057-16
-
J N Patro, P Ramachandran, T Barnaba, M K Mammel, J L Lewis, and C A Elkins, "Culture-independent metagenomic surveillance of commercially available probiotics with high-throughput next-generation sequencing," mSphere, vol 1, no 2, Mar-Apr 2016, Art no e00057-16 doi 10 1128/ mSphere 00057-16
-
(2016)
MSphere
, vol.1
, Issue.2
-
-
Patro, J.N.1
Ramachandran, P.2
Barnaba, T.3
Mammel, M.K.4
Lewis, J.L.5
Elkins, C.A.6
-
10
-
-
80053361344
-
Epidemiology Outbreak detectives embrace the genome era
-
K Kupferschmidt, "Epidemiology Outbreak detectives embrace the genome era," Science, vol 333, no 6051, pp 1818-1819, 2011
-
(2011)
Science
, vol.333
, Issue.6051
, pp. 1818-1819
-
-
Kupferschmidt, K.1
-
11
-
-
84994507673
-
WGS will become sole method but current typing capacity should be available-ECDC
-
Oct 23
-
J Whitworth, "WGS will become sole method but current typing capacity should be available-ECDC," Food Quality News, Oct 23, 2015 [Online] Available http//www.foodqualitynews.com/Lab-Technology/WGS-cost-and-time-comparable-to-currenttyping-methods
-
(2015)
Food Quality News
-
-
Whitworth, J.1
-
13
-
-
84994523339
-
-
IBM, Mars, Inc, Armonk, NY, USA Jan
-
"Launch pioneering effort to drive advances in global food safety," IBM, Mars, Inc, Armonk, NY, USA, Jan 2015 [Online] Available http//www.mars.com/global/press-center/global-food-safety.aspx
-
(2015)
Launch Pioneering Effort to Drive Advances in Global Food Safety
-
-
-
15
-
-
84994542389
-
-
Centers Disease Control Prevent, Foodnet, Atlanta, GA, USA
-
"Enteric diseases epidemiology branch Surveillance reports," Centers Disease Control Prevent, Foodnet, Atlanta, GA, USA [Online] Available http//www.cdc.gov/ncezid/dfwed/edeb/reports.html
-
Enteric Diseases Epidemiology Branch Surveillance Reports
-
-
-
16
-
-
84994490325
-
-
The Washington Post, Washington, DC, USA, May 22
-
L Bever, "Salmonella outbreak linked to raw tuna sushi spreads to nine states," The Washington Post, Washington, DC, USA, May 22, 2015 [Online] Available http//www.washingtonpost.com/news/morning-mix/wp/2015/05/22/salmonella-outbreak-linked
-
(2015)
Salmonella Outbreak Linked to Raw Tuna Sushi Spreads to Nine States
-
-
Bever, L.1
-
17
-
-
11144354606
-
Chicken consumption is a newly identified risk factor for sporadic Salmonella enterica serotype Enteritidis infections in the United States A case-control study in FoodNet sites
-
A C Kimura, V Reddy, R Marcus, P R Cieslak, J C Mohle-Boetani, H D Kassenborg, S D Segler, F P Harnett, T Barrett, and D L Swerdlow, "Chicken consumption is a newly identified risk factor for sporadic Salmonella enterica serotype Enteritidis infections in the United States A case-control study in FoodNet sites," Clin Infect Diseases, vol 38, suppl 3, pp S244-S252, 2004
-
(2004)
Clin Infect Diseases
, vol.38
, pp. S244-S252
-
-
Kimura, A.C.1
Reddy, V.2
Marcus, R.3
Cieslak, P.R.4
Mohle-Boetani, J.C.5
Kassenborg, H.D.6
Segler, S.D.7
Harnett, F.P.8
Barrett, T.9
Swerdlow, D.L.10
-
18
-
-
84892772522
-
Listeria monocytogenes persistence in food-associated environments Epidemiology, strain characteristics, and implications for public health
-
V Ferreira, M Wiedmann, P Teixeira, and M J Stasiewicz, "Listeria monocytogenes persistence in food-associated environments Epidemiology, strain characteristics, and implications for public health," J Food Protect, vol 77, pp 150-70, 2014
-
(2014)
J Food Protect
, vol.77
, pp. 150-170
-
-
Ferreira, V.1
Wiedmann, M.2
Teixeira, P.3
Stasiewicz, M.J.4
-
19
-
-
84928489669
-
Stress adaptation in foodborne pathogens
-
M Begley and C Hill, "Stress adaptation in foodborne pathogens," Annu Rev Food Sci Technol, vol 6, pp 191-210, 2015
-
(2015)
Annu Rev Food Sci Technol
, vol.6
, pp. 191-210
-
-
Begley, M.1
Hill, C.2
-
20
-
-
84859499489
-
Population genomics of early events in the ecological differentiation of bacteria
-
B J Shapiro, J Friedman, O X Cordero, S P Preheim, S C Timberlake, G Szabó, M F Polz, and E J Alm, "Population genomics of early events in the ecological differentiation of bacteria," Science, vol 336, pp 48-51, 2012
-
(2012)
Science
, vol.336
, pp. 48-51
-
-
Shapiro, B.J.1
Friedman, J.2
Cordero, O.X.3
Preheim, S.P.4
Timberlake, S.C.5
Szabó, G.6
Polz, M.F.7
Alm, E.J.8
-
21
-
-
84861203398
-
Intraspecies variation in the emergence of hyperinfectious bacterial strains in nature
-
Art no e1002647
-
D M Heithoff, W R Shimp, J K House, Y Xie, B C Weimer, R L Sinsheimer, and M J Mahan, "Intraspecies variation in the emergence of hyperinfectious bacterial strains in nature," PLoS Pathogen, vol 8, no 4, 2012, Art no e1002647
-
(2012)
PLoS Pathogen
, vol.8
, Issue.4
-
-
Heithoff, D.M.1
Shimp, W.R.2
House, J.K.3
Xie, Y.4
Weimer, B.C.5
Sinsheimer, R.L.6
Mahan, M.J.7
-
22
-
-
84899962621
-
Exploring bacterial epigenomics in the NGS era-a new approach for an emerging frontier
-
P Chen, R Jeannotte, and B C Weimer, "Exploring bacterial epigenomics in the NGS era-a new approach for an emerging frontier," Trends Microbiol, vol 22, pp 292-300, 2014
-
(2014)
Trends Microbiol
, vol.22
, pp. 292-300
-
-
Chen, P.1
Jeannotte, R.2
Weimer, B.C.3
-
23
-
-
84906260161
-
Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages
-
X Deng, P T Desai, H C den Bakker, M Mikoleit, B Tolar, E Trees, R S Hendriksen, J Frye, S Porwollik, B C Weimer, M Wiedmann, G M Weinstock, M McClelland, and P I Fields, "Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages," Emerg Infect Diseases, vol 20, no 9, pp 1481-1489, 2014
-
(2014)
Emerg Infect Diseases
, vol.20
, Issue.9
, pp. 1481-1489
-
-
Deng, X.1
Desai, P.T.2
Den Bakker, H.C.3
Mikoleit, M.4
Tolar, B.5
Trees, E.6
Hendriksen, R.S.7
Frye, J.8
Porwollik, S.9
Weimer, B.C.10
Wiedmann, M.11
Weinstock, G.M.12
McClelland, M.13
Fields, P.I.14
-
24
-
-
84888258434
-
Proteomics of cold stress in Salmonella enterica sv Typhimurium LT2
-
J Shah, P Desai, D Chen, J Stevens, and B C Weimer, "Proteomics of cold stress in Salmonella enterica sv Typhimurium LT2," Appl Environ Microbiol, vol 79, pp 7281-7289, 2014
-
(2014)
Appl Environ Microbiol
, vol.79
, pp. 7281-7289
-
-
Shah, J.1
Desai, P.2
Chen, D.3
Stevens, J.4
Weimer, B.C.5
-
25
-
-
72949101201
-
A phylogeny-driven genomic encyclopedia of Bacteria and Archaea
-
D Wu, P Hugenholtz, K Mavromatis, R Pukall, E Dalin, N N Ivanova, V Kunin, L Goodwin, M Wu, and J A Eisen, "A phylogeny-driven genomic encyclopedia of Bacteria and Archaea," Nature, vol 462, pp 1056-1060, 2009
-
(2009)
Nature
, vol.462
, pp. 1056-1060
-
-
Wu, D.1
Hugenholtz, P.2
Mavromatis, K.3
Pukall, R.4
Dalin, E.5
Ivanova, N.N.6
Kunin, V.7
Goodwin, L.8
Wu, M.9
Eisen, J.A.10
-
26
-
-
80052889924
-
The Salmonella enterica pan-genome
-
A Jacobsen, R S Hendriksen, F M Aaresturp, D W Ussery, and C Friis, "The Salmonella enterica pan-genome," Microb Ecol, vol 62, pp 487-504, 2011
-
(2011)
Microb Ecol
, vol.62
, pp. 487-504
-
-
Jacobsen, A.1
Hendriksen, R.S.2
Aaresturp, F.M.3
Ussery, D.W.4
Friis, C.5
-
27
-
-
85007441225
-
Complete genome sequences of a clinical and an environmental Vibrio parahaemolyticus isolate
-
Art no e00216
-
C H Lüdeke, N Kong, B C Weimer, M Fischer, and J L Jones, "Complete genome sequences of a clinical and an environmental Vibrio parahaemolyticus isolate," Genome Announce, vol 3, no 2, 2015, Art no e00216
-
(2015)
Genome Announce
, vol.3
, Issue.2
-
-
Lüdeke, C.H.1
Kong, N.2
Weimer, B.C.3
Fischer, M.4
Jones, J.L.5
-
28
-
-
84994490310
-
Large-scale release of Campylobacter draft genomes; Resources for food safety and public health from the 100K Pathogen Genome Project
-
D B Storey, A M Weis, N Kong, A K Townsend, W A Miller, B A Byrne, C C Taff, B Gilpin, C Mason, C Fitzgerald, and B C Weimer, "Large-scale release of Campylobacter draft genomes; resources for food safety and public health from the 100K Pathogen Genome Project," 100K Project Bioproject, 2015 [Online] Available http//www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA186441
-
(2015)
100K Project Bioproject
-
-
Storey, D.B.1
Weis, A.M.2
Kong, N.3
Townsend, A.K.4
Miller, W.A.5
Byrne, B.A.6
Taff, C.C.7
Gilpin, B.8
Mason, C.9
Fitzgerald, C.10
Weimer, B.C.11
-
29
-
-
84994536420
-
-
D B Storey, N Arabyan, W Ng, K Thao, P Chen, N Kong, C Huang, S Fouthoui, and B C Weimer, 2015 Large-scale release of Salmonella draft genomes; resources for food safety and public health from the 100K Pathogen Genome Project [Online] Available http//www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA186441
-
(2015)
Large-scale Release of Salmonella Draft Genomes; Resources for Food Safety and Public Health from the 100K Pathogen Genome Project [Online]
-
-
Storey, D.B.1
Arabyan, N.2
Ng, W.3
Thao, K.4
Chen, P.5
Kong, N.6
Huang, C.7
Fouthoui, S.8
Weimer, B.C.9
-
30
-
-
84857073319
-
Rapid genomic-scale analysis of Escherichia coli O104 H4 by using high-resolution alternative methods to next-generation sequencing
-
S A Jackson, M L Kotewicz, I R Patel, D W Lacher, J Gangiredla, and C A Elkins, "Rapid genomic-scale analysis of Escherichia coli O104 H4 by using high-resolution alternative methods to next-generation sequencing," Appl Environ Microbiol, vol 78, pp 1601-1605, 2012
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 1601-1605
-
-
Jackson, S.A.1
Kotewicz, M.L.2
Patel, I.R.3
Lacher, D.W.4
Gangiredla, J.5
Elkins, C.A.6
-
31
-
-
79960609901
-
Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104 H4 outbreak by rapid next generation sequencing technology
-
Art no e22751
-
A Mellmann D Harmsen, C A Cummings, E B Zentz, S R Leopold, A Rico A, K Prior, R Szczepanowski, Y Ji, W Zhang, S F McLaughlin, J K Henkhaus, B Leopold, M Bielaszewska, R Prager, P M Brzoska, R L Moore, S Guenther, J M Rothberg, and H Karch, "Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104 H4 outbreak by rapid next generation sequencing technology," PLoS One, vol 6, no 7, 2011, Art no e22751
-
(2011)
PLoS One
, vol.6
, Issue.7
-
-
Mellmann, A.1
Harmsen, D.2
Cummings, C.A.3
Zentz, E.B.4
Leopold, S.R.5
Rico, A.A.6
Prior, K.7
Szczepanowski, R.8
Ji, Y.9
Zhang, W.10
McLaughlin, S.F.11
Henkhaus, J.K.12
Leopold, B.13
Bielaszewska, M.14
Prager, R.15
Brzoska, P.M.16
Moore, R.L.17
Guenther, S.18
Rothberg, J.M.19
Karch, H.20
more..
-
32
-
-
84857411659
-
Genomic epidemiology of the Escherichia coli O104 H4 outbreaks in Europe, 2011
-
Y H Grad, M Lipsitch, M Feldgarden, H M Arachi, G C Cerqueira, M FitzGerald, B J Haas, C I Murphy, C Russ, S Sykes, B J Walker, J R Wortman, S Young, Q Zeng, A Abouelleil, J Bochicchio, S Chauvin, T DeSmet, S Gujja, C McCowan, A Montmayeur, S Steelman, J Frimodt-Moller, A M Petersen, C Struve, K A Krogfelt, E Bingen, F-X Weill, E-S Lander, C Nusbaum, B W Birren, D T Hung, and W P Hanage, "Genomic epidemiology of the Escherichia coli O104 H4 outbreaks in Europe, 2011," Proc Nat Acad Sci, vol 109, no 8, pp 3065-3070, 2012
-
(2012)
Proc Nat Acad Sci
, vol.109
, Issue.8
, pp. 3065-3070
-
-
Grad, Y.H.1
Lipsitch, M.2
Feldgarden, M.3
Arachi, H.M.4
Cerqueira, G.C.5
FitzGerald, M.6
Haas, B.J.7
Murphy, C.I.8
Russ, C.9
Sykes, S.10
Walker, B.J.11
Wortman, J.R.12
Young, S.13
Zeng, Q.14
Abouelleil, A.15
Bochicchio, J.16
Chauvin, S.17
DeSmet, T.18
Gujja, S.19
McCowan, C.20
Montmayeur, A.21
Steelman, S.22
Frimodt-Moller, J.23
Petersen, A.M.24
Struve, C.25
Krogfelt, K.A.26
Bingen, E.27
Weill, F.-X.28
Lander, E.-S.29
Nusbaum, C.30
Birren, B.W.31
Hung, D.T.32
Hanage, W.P.33
more..
-
33
-
-
53849104729
-
The pangenome structure of Escherichia coli comparative genomic analysis of e coli commensal and pathogenic isolates
-
D A Rasko, M J Rosovitz, G S Myers, E F Mongodin, W F Fricke, P Gajer, J Crabtree, M Sebaihia, N R Thomson, R Chaudhuri, I R Henderson, V Sperandio, and J Ravel, "The pangenome structure of Escherichia coli comparative genomic analysis of E coli commensal and pathogenic isolates," J Bacteriol, vol 190, pp 6881-6893, 2008
-
(2008)
J Bacteriol
, vol.190
, pp. 6881-6893
-
-
Rasko, D.A.1
Rosovitz, M.J.2
Myers, G.S.3
Mongodin, E.F.4
Fricke, W.F.5
Gajer, P.6
Crabtree, J.7
Sebaihia, M.8
Thomson, N.R.9
Chaudhuri, R.10
Henderson, I.R.11
Sperandio, V.12
Ravel, J.13
-
34
-
-
50349083731
-
Functional food Product development, marketing and consumer acceptance-A review
-
I Siró, E Kpolna, B Kpolna, and A Lugasi, "Functional food Product development, marketing and consumer acceptance-A review," Appetite, vol 51, pp 456-467, 2008
-
(2008)
Appetite
, vol.51
, pp. 456-467
-
-
Siró, I.1
Kpolna, E.2
Kpolna, B.3
Lugasi, A.4
-
35
-
-
84887028252
-
Fortification of foods with omega-3 polyunsaturated fatty acids
-
B Ganesan, C Brothersen, and D J McMahon, "Fortification of foods with omega-3 polyunsaturated fatty acids," Critical Rev Food Sci Nutrition, vol 54, no 1, pp 98-114, 2014
-
(2014)
Critical Rev Food Sci Nutrition
, vol.54
, Issue.1
, pp. 98-114
-
-
Ganesan, B.1
Brothersen, C.2
McMahon, D.J.3
-
36
-
-
84860853504
-
Designing probiotics with respect to the native microbiome
-
A Barzegari and A A Saei, "Designing probiotics with respect to the native microbiome," Future Microbiol, vol 7, no 5, pp 571-575, 2012
-
(2012)
Future Microbiol
, vol.7
, Issue.5
, pp. 571-575
-
-
Barzegari, A.1
Saei, A.A.2
-
37
-
-
33745148973
-
Identification of the Leucine-to-2-Methylbutyric Acid Catabolic Pathway of Lactococcus lactis
-
B Ganesan, P Dobrowolski, and B C Weimer, "Identification of the Leucine-to-2-Methylbutyric Acid Catabolic Pathway of Lactococcus lactis," Appl Environ Microbiol, vol 72, pp 4264-4273, 2006
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 4264-4273
-
-
Ganesan, B.1
Dobrowolski, P.2
Weimer, B.C.3
-
38
-
-
34247634967
-
Carbohydrate starvation causes a metabolically active but nonculturable state in Lactococcus lactis
-
B Ganesan, M Stuart, and B C Weimer, "Carbohydrate starvation causes a metabolically active but nonculturable state in Lactococcus lactis," Appl Environ Microbiol, vol 73, pp 2498-2512, 2007.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 2498-2512
-
-
Ganesan, B.1
Stuart, M.2
Weimer, B.C.3
-
39
-
-
84920621547
-
Gut microbiota-produced succinate promotes Clostridum difficile infection after antibiotics or motility disturbance
-
J Ferreyra, K J Wu, A J Hrykowian, D M Bouley, B C Weimer, and J L Sonnenburg, "Gut microbiota-produced succinate promotes Clostridum difficile infection after antibiotics or motility disturbance," Cell Host Microbe, vol 16, no 6, pp 770-777, 2014
-
(2014)
Cell Host Microbe
, vol.16
, Issue.6
, pp. 770-777
-
-
Ferreyra, J.1
Wu, K.J.2
Hrykowian, A.J.3
Bouley, D.M.4
Weimer, B.C.5
Sonnenburg, J.L.6
-
40
-
-
80054886353
-
Bacteroides in the Infant Gut Consume Milk Oligosaccharides via Mucus-Utilization Pathways
-
A Marcobal, M Barboza, E D Sonnenburg, E Martens, P Desai, C Lebrilla, B C Weimer, D A Mills, B German, and J L Sonnenburg, "Bacteroides in the Infant Gut Consume Milk Oligosaccharides via Mucus-Utilization Pathways," Cell Host Microbe, vol 10, pp 507-14, 2011
-
(2011)
Cell Host Microbe
, vol.10
, pp. 507-514
-
-
Marcobal, A.1
Barboza, M.2
Sonnenburg, E.D.3
Martens, E.4
Desai, P.5
Lebrilla, C.6
Weimer, B.C.7
Mills, D.A.8
German, B.9
Sonnenburg, J.L.10
-
41
-
-
84874733585
-
Dissecting the role of milk components on gut microbiota composition
-
E A Maga, B C Weimer, and J D Murray, "Dissecting the role of milk components on gut microbiota composition," Gut microbes, vol 4, no 2, pp 136-139, 2013
-
(2013)
Gut Microbes
, vol.4
, Issue.2
, pp. 136-139
-
-
Maga, E.A.1
Weimer, B.C.2
Murray, J.D.3
-
42
-
-
84866132092
-
Consumption of lysozyme-rich milk can alter microbial fecal populations
-
E A Maga, P Desai, B C Weimer, N Dao, D Küeltz, and J D Murray, "Consumption of lysozyme-rich milk can alter microbial fecal populations," Appl Environ Microbiol, vol 78, no 17, pp 6153-6160, 2012
-
(2012)
Appl Environ Microbiol
, vol.78
, Issue.17
, pp. 6153-6160
-
-
Maga, E.A.1
Desai, P.2
Weimer, B.C.3
Dao, N.4
Küeltz, D.5
Murray, J.D.6
-
43
-
-
84862141706
-
Glycosylation of human milk lactoferrin exhibits dynamic changes during early lactation enhancing its role in pathogenic bacteria-host interactions
-
Art no 015248
-
M Barboza, J W Froehlich, J Pinzon, I Moeller, B Lonnerdal, J B German, B C Weimer, and C B Lebrilla, "Glycosylation of human milk lactoferrin exhibits dynamic changes during early lactation enhancing its role in pathogenic bacteria-host interactions," Molecular Cellular Proteomics, vol 11, no 6, 2012, Art no 015248
-
(2012)
Molecular Cellular Proteomics
, vol.11
, Issue.6
-
-
Barboza, M.1
Froehlich, J.W.2
Pinzon, J.3
Moeller, I.4
Lonnerdal, B.5
German, J.B.6
Weimer, B.C.7
Lebrilla, C.B.8
-
44
-
-
84862874448
-
Comparison of microbial communities in marinated and unmarinated broiler meat by metagenomics
-
T T Nieminen, K Koskinen, P Laine, J Hultman, E Säde E, L Paulin, A Paloranta, P Johansson, J Björkroth, and P Auvinen, "Comparison of microbial communities in marinated and unmarinated broiler meat by metagenomics," Int J Food Microbiol, vol 157, no 2, pp 142-149, 2012
-
(2012)
Int J Food Microbiol
, vol.157
, Issue.2
, pp. 142-149
-
-
Nieminen, T.T.1
Koskinen, K.2
Laine, P.3
Hultman, J.4
Säde, E.E.5
Paulin, L.6
Paloranta, A.7
Johansson, P.8
Björkroth, J.9
Auvinen, P.10
-
45
-
-
0346671223
-
Considering the complexity of microbial community dynamics in food safety risk assessment
-
M Powell, W Schlosser, and E Ebel, "Considering the complexity of microbial community dynamics in food safety risk assessment," Int J Food Microbiol, vol 2, pp 171-179, 2004
-
(2004)
Int J Food Microbiol
, vol.2
, pp. 171-179
-
-
Powell, M.1
Schlosser, W.2
Ebel, E.3
-
46
-
-
84874973446
-
Application of state-of-art sequencing technologies to indigenous food fermentations
-
S van Hijum, E E Vaughan, and R F Vogel, "Application of state-of-art sequencing technologies to indigenous food fermentations," Current Opinion Biotechnol, vol 24, no 2, pp 178-186, 2013
-
(2013)
Current Opinion Biotechnol
, vol.24
, Issue.2
, pp. 178-186
-
-
Van Hijum, S.1
Vaughan, E.E.2
Vogel, R.F.3
-
47
-
-
77955948198
-
Community dynamics of bacteria in sourdough fermentations as revealed by their metatranscriptome
-
S Weckx, R Van der Meulen, J Allermeersch, G Huys, P Vandamme, and P Van Hummelen, "Community dynamics of bacteria in sourdough fermentations as revealed by their metatranscriptome," Appl Environ Microbiol, vol 76, no 16, pp 5402-5408, 2010
-
(2010)
Appl Environ Microbiol
, vol.76
, Issue.16
, pp. 5402-5408
-
-
Weckx, S.1
Van der Meulen, R.2
Allermeersch, J.3
Huys, G.4
Vandamme, P.5
Van Hummelen, P.6
-
48
-
-
84880911975
-
A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets
-
M M Leimena, J Ramiro-Garcia, M Davids, B van den Bogert, H Smidt, E J Smid, J Boekhort, E G Zoendal, P J Schapp, and M Kleerebezem, "A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets," BMC Genomics, vol 14, no 530, pp 2-14, 2013
-
(2013)
BMC Genomics
, vol.14
, Issue.530
, pp. 2-14
-
-
Leimena, M.M.1
Ramiro-Garcia, J.2
Davids, M.3
Van den Bogert, B.4
Smidt, H.5
Smid, E.J.6
Boekhort, J.7
Zoendal, E.G.8
Schapp, P.J.9
Kleerebezem, M.10
-
49
-
-
33750341148
-
Comparative genomics of the lactic acid bacteria
-
K Makarova, A Slesarev, Y Wolf, A Sorokin, B Mirkin, E Koonin, and D Mills, "Comparative genomics of the lactic acid bacteria," Proc Nat Acad Sci, vol 103, no 42, pp 15611-15616, 2006
-
(2006)
Proc Nat Acad Sci
, vol.103
, Issue.42
, pp. 15611-15616
-
-
Makarova, K.1
Slesarev, A.2
Wolf, Y.3
Sorokin, A.4
Mirkin, B.5
Koonin, E.6
Mills, D.7
-
50
-
-
84868613754
-
Draft genome sequences of Salmonella enterica serovar Enteritidis strains
-
R E Timme, M W Allard, Y Lao, E Strain, J Pettengill, C Want, C Li, C E Keys, J Zheng, R Stones, M R Wilson, S M Musser, and E W Brown, "Draft genome sequences of Salmonella enterica serovar Enteritidis strains," J Bacteriol, vol 194, no 21, pp 5994-5995, 2012
-
(2012)
J Bacteriol
, vol.194
, Issue.21
, pp. 5994-5995
-
-
Timme, R.E.1
Allard, M.W.2
Lao, Y.3
Strain, E.4
Pettengill, J.5
Want, C.6
Li, C.7
Keys, C.E.8
Zheng, J.9
Stones, R.10
Wilson, M.R.11
Musser, S.M.12
Brown, E.W.13
-
51
-
-
84988815003
-
Quality scores for 32,000 genomes
-
M L Land, D Hyatt, S R Jun, G H Kora, L J Hauser, O Lukjancenko, and D W Ussery, "Quality scores for 32,000 genomes," Stds Genomic Sci, vol 9, no 1, p 20, 2014
-
(2014)
Stds Genomic Sci
, vol.9
, Issue.1
, pp. 20
-
-
Land, M.L.1
Hyatt, D.2
Jun, S.R.3
Kora, G.H.4
Hauser, L.J.5
Lukjancenko, O.6
Ussery, D.W.7
-
53
-
-
66449136667
-
ABySS A parallel assembler for short read sequence data
-
J T Simpson, K Wong, S D Jackman, J E Schein, S J M Jones, and ? Birol, "ABySS A parallel assembler for short read sequence data," Genome Res, vol 19, no 6, pp 1117-1123, 2009
-
(2009)
Genome Res
, vol.19
, Issue.6
, pp. 1117-1123
-
-
Simpson, J.T.1
Wong, K.2
Jackman, S.D.3
Schein, J.E.4
Jones, S.J.M.5
Birol, I.6
-
54
-
-
84901417347
-
Prokka Rapid prokaryotic genome annotation
-
Jul
-
T Seemann, "Prokka Rapid prokaryotic genome annotation," Bioinformatics, vol 30, no 14, pp 2068-2069, Jul 2014 [Online] Available http//www.ncbi.nlm.nih.gov/pubmed/24642063
-
(2014)
Bioinformatics
, vol.30
, Issue.14
, pp. 2068-2069
-
-
Seemann, T.1
-
55
-
-
84925104897
-
Geospatial resolution of human and bacterial diversity with city-scale metagenomics
-
E Afshinnekoo, C Meydan, S Chowdhury, D Jaroudi, C Boyer, N Bernstein, J M Maritz, D Reeves, J Gandara, and C E Mason, "Geospatial resolution of human and bacterial diversity with city-scale metagenomics," Cell Syst, vol 1, no 1, pp 72-87, 2015
-
(2015)
Cell Syst
, vol.1
, Issue.1
, pp. 72-87
-
-
Afshinnekoo, E.1
Meydan, C.2
Chowdhury, S.3
Jaroudi, D.4
Boyer, C.5
Bernstein, N.6
Maritz, J.M.7
Reeves, D.8
Gandara, J.9
Mason, C.E.10
-
56
-
-
84877133975
-
High-throughput sequencing and metagenomics Moving forward in the culture-independent analysis of food microbial ecology
-
D Ercolini, "High-throughput sequencing and metagenomics Moving forward in the culture-independent analysis of food microbial ecology," Appl Environ Microbiol, vol 79, no 10, pp 3148-3155, 2013
-
(2013)
Appl Environ Microbiol
, vol.79
, Issue.10
, pp. 3148-3155
-
-
Ercolini, D.1
-
57
-
-
84890167496
-
Cross-talk between two e coli strains and a human colorectal adenocarcinoma-derived cell line
-
X He, D O Mishchuk, J Shah, B C Weimer, and C M Slupsky, "Cross-talk between two E coli strains and a human colorectal adenocarcinoma-derived cell line," Sci Rep, vol 3, pp 3416-3426, 2013
-
(2013)
Sci Rep
, vol.3
, pp. 3416-3426
-
-
He, X.1
Mishchuk, D.O.2
Shah, J.3
Weimer, B.C.4
Slupsky, C.M.5
-
58
-
-
84994478597
-
-
143rd American Public Health Association (APHA) Annual Meeting and Exposition Oct 31-Nov 4
-
S Edlund, D Chambliss, J Kaufman, D B Storey, and B Weimer, "A scalable platform for meta-genomic analysis," presented at the 143rd American Public Health Association (APHA) Annual Meeting and Exposition, Oct 31-Nov 4, 2015 [Online] Available https//apha.confex.com/apha/143am/webprogram/Paper334559.html
-
(2015)
A scalable platform for meta-genomic analysis
-
-
Edlund, S.1
Chambliss, D.2
Kaufman, J.3
Storey, D.B.4
Weimer, B.5
-
59
-
-
84994493211
-
Design of the MCAW compute service for food safety bioinformatics
-
Paper 2
-
S B Edlund, K L Beck, N Haiminen, L P Parida, D B Storey, B C Weimer, J H Kaufman, and D D Chambliss, "Design of the MCAW compute service for food safety bioinformatics," IBM J Res and Dev, vol 60, no 5/6, Paper 2, pp 2 1-2 12, 2016 (this issue).
-
(2016)
IBM J Res and Dev
, vol.60
, Issue.5-6
, pp. 21-212
-
-
Edlund, S.B.1
Beck, K.L.2
Haiminen, N.3
Parida, L.P.4
Storey, D.B.5
Weimer, B.C.6
Kaufman, J.H.7
Chambliss, D.D.8
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