메뉴 건너뛰기




Volumn 283, Issue 1830, 2016, Pages

Epistasis between antibiotic resistance mutations and genetic background shape the fitness effect of resistance across species of pseudomonas

Author keywords

Antibiotic resistance; Fitness costs; Genetic background; Pseudomonas

Indexed keywords

ANTIBIOTIC RESISTANCE; BACTERIUM; ENZYME; EPISTASIS; FITNESS; GENE EXPRESSION; GENETIC ANALYSIS; GENOME; MUTATION; PARALLEL EVOLUTION; PATHOGEN;

EID: 84993980188     PISSN: 09628452     EISSN: 14712954     Source Type: Journal    
DOI: 10.1098/rspb.2016.0151     Document Type: Article
Times cited : (72)

References (36)
  • 1
    • 33748693294 scopus 로고    scopus 로고
    • The biological cost of mutational antibiotic resistance: Any practical conclusions
    • Andersson DI. 2006 The biological cost of mutational antibiotic resistance: any practical conclusions? Curr. Opin. Microbiol. 9, 461–465. (doi: 10.1016/j.mib.2006.07.002)
    • (2006) Curr. Opin. Microbiol , vol.9 , pp. 461-465
    • Andersson, D.I.1
  • 2
    • 77949569493 scopus 로고    scopus 로고
    • Antibiotic resistance and its cost: Is it possible to reverse resistance? Nat
    • Andersson DI, Hughes D. 2010 Antibiotic resistance and its cost: is it possible to reverse resistance? Nat. Rev. Microbiol. 8, 260–271. (doi: 10.1038/ nrmicro2319)
    • (2010) Rev. Microbiol , vol.8 , pp. 260-271
    • Andersson, D.I.1    Hughes, D.2
  • 3
    • 84925296085 scopus 로고    scopus 로고
    • The genetic basis of the fitness costs of antimicrobial resistance: A metaanalysis approach
    • Vogwill T, MacLean RC. 2015 The genetic basis of the fitness costs of antimicrobial resistance: a metaanalysis approach. Evol. Appl. 8, 284–295. (doi: 10. 1111/eva.12202)
    • (2015) Evol. Appl , vol.8 , pp. 284-295
    • Vogwill, T.1    Maclean, R.C.2
  • 4
    • 77952884274 scopus 로고    scopus 로고
    • How antibiotics kill bacteria: From targets to networks
    • Kohanski MA, Dwyer DJ, Collins JJ. 2010 How antibiotics kill bacteria: from targets to networks. Nat. Rev. Microbiol. 8, 423–435. (doi: 10.1038/ nrmicro2333)
    • (2010) Nat. Rev. Microbiol , vol.8 , pp. 423-435
    • Kohanski, M.A.1    Dwyer, D.J.2    Collins, J.J.3
  • 6
    • 84928190938 scopus 로고    scopus 로고
    • Comprehensive phenotypic characterization of rifampicin resistance mutations in Salmonella provides insight into the evolution of resistance in Mycobacterium tuberculosis
    • Brandis G, Pietsch F, Alemayehu R, Hughes D. 2015 Comprehensive phenotypic characterization of rifampicin resistance mutations in Salmonella provides insight into the evolution of resistance in Mycobacterium tuberculosis. J. Antimicrob. Chemother. 70, 680–685. (doi: 10.1093/ jac/dku434)
    • (2015) J. Antimicrob. Chemother , vol.70 , pp. 680-685
    • Brandis, G.1    Pietsch, F.2    Alemayehu, R.3    Hughes, D.4
  • 7
    • 84924973674 scopus 로고    scopus 로고
    • Testing the role of genetic background in parallel evolution using the comparative experimental evolution of antibiotic resistance. Mol. Biol
    • Vogwill T, Kojadinovic M, Furió V, MacLean RC. 2014 Testing the role of genetic background in parallel evolution using the comparative experimental evolution of antibiotic resistance. Mol. Biol. Evol. 31, 3314–3323. (doi: 10.1093/molbev/msu262)
    • (2014) Evol , vol.31 , pp. 3314-3323
    • Vogwill, T.1    Kojadinovic, M.2    Furió, V.3    Maclean, R.C.4
  • 8
    • 0031687472 scopus 로고    scopus 로고
    • 1998 gyrA mutations associated with fluoroquinolone resistance in eight species of Enterobacteriaceae
    • Weigel LM, Steward CD, Tenover FC. 1998 gyrA mutations associated with fluoroquinolone resistance in eight species of Enterobacteriaceae. Antimicrob. Agents Chemother. 42, 2661–2667.
    • Antimicrob. Agents Chemother , vol.42 , pp. 2661-2667
    • Weigel, L.M.1    Steward, C.D.2    Tenover, F.C.3
  • 9
  • 10
    • 75649111192 scopus 로고    scopus 로고
    • The genetic landscape of a cell
    • Costanzo M et al. 2010 The genetic landscape of a cell. Science 327, 425–431. (doi: 10.1126/science. 1180823)
    • (2010) Science , vol.327 , pp. 425-431
    • Costanzo, M.1
  • 11
    • 79251553136 scopus 로고    scopus 로고
    • Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape for rifampicin resistance in Pseudomonas aeruginosa
    • MacLean RC, Perron GG, Gardner A. 2010 Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape for rifampicin resistance in Pseudomonas aeruginosa. Genetics 186, 1345–1354. (doi: 10.1534/genetics. 110.123083)
    • (2010) Genetics , vol.186 , pp. 1345-1354
    • Maclean, R.C.1    Perron, G.G.2    Gardner, A.3
  • 12
    • 65249103440 scopus 로고    scopus 로고
    • The cost of multiple drug resistance in Pseudomonas aeruginosa
    • Ward H, Perron GG, Maclean RC. 2009 The cost of multiple drug resistance in Pseudomonas aeruginosa. J. Evol. Biol. 22, 997–1003. (doi: 10. 1111/j.1420-9101.2009.01712.x)
    • (2009) J. Evol. Biol , vol.22 , pp. 997-1003
    • Ward, H.1    Perron, G.G.2    Maclean, R.C.3
  • 14
    • 0033764648 scopus 로고    scopus 로고
    • The causes of Pseudomonas diversity
    • Spiers AJ, Buckling A, Rainey PB. 2000 The causes of Pseudomonas diversity. Microbiology 146, 2345–2350. (doi: 10.1099/00221287-146-10-2345)
    • (2000) Microbiology , vol.146 , pp. 2345-2350
    • Spiers, A.J.1    Buckling, A.2    Rainey, P.B.3
  • 15
    • 0034537725 scopus 로고    scopus 로고
    • Compensatory evolution in rifampin-resistant Escherichia coli
    • Reynolds MG. 2000 Compensatory evolution in rifampin-resistant Escherichia coli. Genetics 156, 1471–1481.
    • (2000) Genetics , vol.156 , pp. 1471-1481
    • Reynolds, M.G.1
  • 16
    • 79960836520 scopus 로고    scopus 로고
    • Epistasis buffers the fitness effects of rifampicin-resistance mutations in Pseudomonas aeruginosa
    • Hall AR, MacLean RC. 2011 Epistasis buffers the fitness effects of rifampicin-resistance mutations in Pseudomonas aeruginosa. Evolution 65, 2370-2379. (doi: 10.1111/j.1558-5646.2011.01302.x)
    • (2011) Evolution , vol.65 , pp. 2370-2379
    • Hall, A.R.1    Maclean, R.C.2
  • 17
    • 1642543134 scopus 로고    scopus 로고
    • Effect of rpoB mutations conferring rifampin resistance on fitness of Mycobacterium tuberculosis. Antimicrob
    • Mariam DH, Mengistu Y, Hoffner SE, Andersson DI. 2004 Effect of rpoB mutations conferring rifampin resistance on fitness of Mycobacterium tuberculosis. Antimicrob. Agents Chemother. 48, 1289–1294. (doi: 10.1128/AAC.48.4.1289-1294.2004)
    • (2004) Agents Chemother , vol.48 , pp. 1289-1294
    • Mariam, D.H.1    Mengistu, Y.2    Hoffner, S.E.3    Andersson, D.I.4
  • 18
    • 0036840577 scopus 로고    scopus 로고
    • Biological cost of rifampin resistance from the perspective of Staphylococcus aureus. Antimicrob
    • Wichelhaus TA, Böddinghaus B, Besier S, Schäfer V, Brade V, Ludwig A. 2002 Biological cost of rifampin resistance from the perspective of Staphylococcus aureus. Antimicrob. Agents Chemother. 46, 3381-3385. (doi: 10.1128/AAC.46.11.3381-3385.2002)
    • (2002) Agents Chemother , vol.46 , pp. 3381-3385
    • Wichelhaus, T.A.1    Böddinghaus, B.2    Besier, S.3    Schäfer, V.4    Brade, V.5    Ludwig, A.6
  • 19
    • 84925343017 scopus 로고    scopus 로고
    • The fitness costs of antibiotic resistance mutations. Evol
    • Melnyk AH, Wong A, Kassen R. 2015 The fitness costs of antibiotic resistance mutations. Evol. Appl. 8, 273–283. (doi: 10.1111/eva.12196)
    • (2015) Appl , vol.8 , pp. 273-283
    • Melnyk, A.H.1    Wong, A.2    Kassen, R.3
  • 20
    • 84920903379 scopus 로고    scopus 로고
    • Linking system-wide impacts of RNA polymerase mutations to the fitness cost of rifampin resistance in Pseudomonas aeruginosa
    • Qi Q, Preston GM, MacLean RC. 2014 Linking system-wide impacts of RNA polymerase mutations to the fitness cost of rifampin resistance in Pseudomonas aeruginosa. mBio 5, e01562-14. (doi: 10.1128/mBio.01562-14)
    • (2014) Mbio , vol.5
    • Qi, Q.1    Preston, G.M.2    Maclean, R.C.3
  • 21
    • 33749531431 scopus 로고    scopus 로고
    • 2006 mini-Tn7 insertion in bacteria with single attTn7 sites: Example Pseudomonas aeruginosa
    • Choi K-H, Schweizer HP. 2006 mini-Tn7 insertion in bacteria with single attTn7 sites: example Pseudomonas aeruginosa. Nat. Protoc. 1, 153–161. (doi: 10.1038/nprot.2006.24)
    • Nat. Protoc , vol.1 , pp. 153-161
    • Choi, K.-H.1    Schweizer, H.P.2
  • 22
    • 0022203256 scopus 로고
    • Phylogenies and the comparative method
    • Felsenstein J. 1985 Phylogenies and the comparative method. Am. Nat. 125, 1–15. (doi: 10. 1086/284325)
    • (1985) Am. Nat , vol.125 , pp. 1-15
    • Felsenstein, J.1
  • 23
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010 New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59, 307–321. (doi: 10.1093/sysbio/ syq010)
    • (2010) Syst. Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.-F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 24
    • 84878167482 scopus 로고    scopus 로고
    • Does your gene need a background check? How genetic background impacts the analysis of mutations, genes, and evolution
    • Chandler CH, Chari S, Dworkin I. 2013 Does your gene need a background check? How genetic background impacts the analysis of mutations, genes, and evolution. Trends Genet. 29, 358–366. (doi: 10.1016/j.tig.2013.01.009)
    • (2013) Trends Genet , vol.29 , pp. 358-366
    • Chandler, C.H.1    Chari, S.2    Dworkin, I.3
  • 25
    • 84901347410 scopus 로고    scopus 로고
    • Causes and consequences of genetic background effects illuminated by integrative genomic analysis
    • Chandler CH, Chari S, Tack D, Dworkin I. 2014 Causes and consequences of genetic background effects illuminated by integrative genomic analysis. Genetics 196, 1321–1336. (doi: 10.1534/genetics. 113.159426)
    • (2014) Genetics , vol.196 , pp. 1321-1336
    • Chandler, C.H.1    Chari, S.2    Tack, D.3    Dworkin, I.4
  • 26
    • 0031963154 scopus 로고    scopus 로고
    • Distribution of chromosome length variation in natural isolates of Escherichia coli
    • Bergthorsson U, Ochman H. 1998 Distribution of chromosome length variation in natural isolates of Escherichia coli. Mol. Biol. Evol. 15, 6–16. (doi: 10. 1093/oxfordjournals.molbev.a025847)
    • (1998) Mol. Biol. Evol , vol.15 , pp. 6-16
    • Bergthorsson, U.1    Ochman, H.2
  • 27
    • 84864591224 scopus 로고    scopus 로고
    • Comparative genomics of plantassociated Pseudomonas spp.: Insights into diversity and inheritance of traits involved in multitrophic interactions
    • Loper JE et al. 2012 Comparative genomics of plantassociated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions. PLoS Genet. 8, e1002784. (doi: 10.1371/ journal.pgen.1002784)
    • (2012) Plos Genet , vol.8
    • Loper, J.E.1
  • 29
    • 45249085480 scopus 로고    scopus 로고
    • Evolutionary relationships between sporadic and epidemic strains of healthcare-associated methicillin-resistant Staphylococcus aureus
    • Hallin M, Denis O, Deplano A, De Ryck R, Crèvecoeur S, Rottiers S, de Mendonca R, Struelens MJ. 2008 Evolutionary relationships between sporadic and epidemic strains of healthcare-associated methicillin-resistant Staphylococcus aureus. Clin. Microbiol. Infect. 14, 659–669. (doi: 10.1111/j.1469-0691.2008.02015.x)
    • (2008) Clin. Microbiol. Infect , vol.14 , pp. 659-669
    • Hallin, M.1    Denis, O.2    Deplano, A.3    De Ryck, R.4    Crèvecoeur, S.5    Rottiers, S.6    De Mendonca, R.7    Struelens, M.J.8
  • 30
    • 0042373060 scopus 로고    scopus 로고
    • Effects of environment on compensatory mutations to ameliorate costs of antibiotic resistance
    • Björkman J, Nagaev I, Berg OG, Hughes D, Andersson DI. 2000 Effects of environment on compensatory mutations to ameliorate costs of antibiotic resistance. Science 287, 1479–1482. (doi: 10.1126/science.287.5457.1479)
    • (2000) Science , vol.287 , pp. 1479-1482
    • Björkman, J.1    Nagaev, I.2    Berg, O.G.3    Hughes, D.4    Andersson, D.I.5
  • 31
    • 79953197586 scopus 로고    scopus 로고
    • The fitness cost of rifampicin resistance in pseudomonas aeruginosa depends on demand for RNA polymerase
    • Hall AR, Iles JC, MacLean RC. 2011 The fitness cost of rifampicin resistance in pseudomonas aeruginosa depends on demand for RNA polymerase. Genetics 187, 817–822. (doi: 10.1534/genetics.110.124628)
    • (2011) Genetics , vol.187 , pp. 817-822
    • Hall, A.R.1    Iles, J.C.2    Maclean, R.C.3
  • 32
    • 84555209977 scopus 로고    scopus 로고
    • 2012 Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes
    • Comas I, Borrell S, Roetzer A, Rose G, Malla B, Kato-Maeda M, Galagan J, Niemann S, Gagneux S. 2012 Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes. Nat. Genet. 44, 106–110. (doi: 10.1038/ng.1038)
    • Nat. Genet , vol.44 , pp. 106-110
    • Comas, I.1    Borrell, S.2    Roetzer, A.3    Rose, G.4    Malla, B.5    Kato-Maeda, M.6    Galagan, J.7    Niemann, S.8    Gagneux, S.9
  • 33
    • 84955558494 scopus 로고    scopus 로고
    • The genomic basis of adaptation to the fitness cost of rifampicin resistance in Pseudomonas aeruginosa
    • Qi Q, Toll-Riera M, Heilbron K, Preston GM, MacLean RC. 2016 The genomic basis of adaptation to the fitness cost of rifampicin resistance in Pseudomonas aeruginosa. Proc. R. Soc. B 283, 20152452. (doi: 10. 1098/rspb.2015.2452)
    • (2016) Proc. R. Soc. B , vol.283
    • Qi, Q.1    Toll-Riera, M.2    Heilbron, K.3    Preston, G.M.4    Maclean, R.C.5
  • 34
    • 84874224139 scopus 로고    scopus 로고
    • The RpoB H481Y rifampicin resistance mutation and an active stringent response reduce virulence and increase resistance to innate immune responses in Staphylococcus aureus
    • Gao W et al. 2013 The RpoB H481Y rifampicin resistance mutation and an active stringent response reduce virulence and increase resistance to innate immune responses in Staphylococcus aureus. J. Infect. Dis. 207, 929–939. (doi: 10.1093/ infdis/jis772)
    • (2013) J. Infect. Dis , vol.207 , pp. 929-939
    • Gao, W.1
  • 35
    • 84874100936 scopus 로고    scopus 로고
    • Evolution of Escherichia coli rifampicin resistance in an antibiotic-free environment during thermal stress
    • Rodriguez-Verdugo A, Gaut B, Tenaillon O. 2013 Evolution of Escherichia coli rifampicin resistance in an antibiotic-free environment during thermal stress. BMC Evol. Biol. 13, 50. (doi: 10.1186/1471-2148-13-50)
    • (2013) BMC Evol. Biol , vol.13 , pp. 50
    • Rodriguez-Verdugo, A.1    Gaut, B.2    Tenaillon, O.3
  • 36
    • 0036460093 scopus 로고    scopus 로고
    • A rifampicin resistance mutation in the rpoB gene confers ppGpp-independent antibiotic production in Streptomyces coelicolor A3 (2). Mol. Gen
    • Xu J, Tozawa Y, Lai C, Hayashi H, Ochi K. 2002 A rifampicin resistance mutation in the rpoB gene confers ppGpp-independent antibiotic production in Streptomyces coelicolor A3 (2). Mol. Gen. Genomics 268, 179–189. (doi: 10.1007/s00438-002-0730-1)
    • (2002) Genomics , vol.268 , pp. 179-189
    • Xu, J.1    Tozawa, Y.2    Lai, C.3    Hayashi, H.4    Ochi, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.