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Volumn 532, Issue 7600, 2016, Pages 517-521

The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA

Author keywords

[No Author keywords available]

Indexed keywords

CPF1 PROTEIN; CRISPR ASSOCIATED PROTEIN; DEOXYRIBONUCLEASE; PRECURSOR CRISPR RNA; RIBONUCLEASE; RNA PRECURSOR; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; BACTERIAL RNA; CALCIUM; GUIDE RNA;

EID: 84964862130     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature17945     Document Type: Article
Times cited : (727)

References (44)
  • 1
    • 84943160849 scopus 로고    scopus 로고
    • Crispr-cas immunity in prokaryotes
    • Marraffini, L. A. CRISPR-Cas immunity in prokaryotes. Nature 526, 55-61 (2015).
    • (2015) Nature , vol.526 , pp. 55-61
    • Marraffini, L.A.1
  • 2
    • 58049191229 scopus 로고    scopus 로고
    • Cas6 is an endoribonuclease that generates guide rnas for invader defense in prokaryotes
    • Carte, J., Wang, R., Li, H., Terns, R. M. & Terns, M. P. Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev. 22, 3489-3496 (2008).
    • (2008) Genes Dev , vol.22 , pp. 3489-3496
    • Carte, J.1    Wang, R.2    Li, H.3    Terns, R.M.4    Terns, M.P.5
  • 3
    • 33744503676 scopus 로고    scopus 로고
    • Crystal structure of hypothetical protein tthb192 from thermus thermophilus hb8 reveals a new protein family with an RNA recognition motif-like domain
    • Ebihara, A. et al. Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain. Protein Sci. 15, 1494-1499 (2006).
    • (2006) Protein Sci , vol.15 , pp. 1494-1499
    • Ebihara, A.1
  • 4
    • 84942746261 scopus 로고    scopus 로고
    • Biogenesis pathways of RNA guides in archaeal and bacterial crispr-cas adaptive immunity
    • Charpentier, E., Richter, H., van der Oost, J. & White, M. F. Biogenesis pathways of RNA guides in archaeal and bacterial CRISPR-Cas adaptive immunity. FEMS Microbiol. Rev. 39, 428-441 (2015).
    • (2015) FEMS Microbiol. Rev , vol.39 , pp. 428-441
    • Charpentier, E.1    Richter, H.2    Van Der Oost, J.3    White, M.F.4
  • 5
    • 84865704094 scopus 로고    scopus 로고
    • Cas5d protein processes pre-crrna and assembles into a cascade-like interference complex in subtype i-c/dvulg crispr-cas system
    • Nam, K. H. et al. Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system. Structure 20, 1574-1584 (2012).
    • (2012) Structure , vol.20 , pp. 1574-1584
    • Nam, K.H.1
  • 6
    • 79955574254 scopus 로고    scopus 로고
    • Structural basis for crispr RNA-guided DNA recognition by cascade
    • Jore, M. M. et al. Structural basis for CRISPR RNA-guided DNA recognition by Cascade. Nature Struct. Mol. Biol. 18, 529-536 (2011).
    • (2011) Nature Struct. Mol. Biol , vol.18 , pp. 529-536
    • Jore, M.M.1
  • 7
    • 84907204893 scopus 로고    scopus 로고
    • Crystal structure of a crispr RNA-guided surveillance complex bound to a ssdna target
    • Mulepati, S., Heroux, A. & Bailey, S. Crystal structure of a CRISPR RNA-guided surveillance complex bound to a ssDNA target. Science 345, 1479-1484 (2014).
    • (2014) Science , vol.345 , pp. 1479-1484
    • Mulepati, S.1    Heroux, A.2    Bailey, S.3
  • 8
    • 84939232427 scopus 로고    scopus 로고
    • DNA and RNA interference mechanisms by crispr-cas surveillance complexes
    • Plagens, A., Richter, H., Charpentier, E. & Randau, L. DNA and RNA interference mechanisms by CRISPR-Cas surveillance complexes. FEMS Microbiol. Rev. 39, 442-463 (2015).
    • (2015) FEMS Microbiol. Rev , vol.39 , pp. 442-463
    • Plagens, A.1    Richter, H.2    Charpentier, E.3    Randau, L.4
  • 10
    • 84856778250 scopus 로고    scopus 로고
    • Structure and mechanism of the cmr complex for crisprmediated antiviral immunity
    • Zhang, J. et al. Structure and mechanism of the CMR complex for CRISPRmediated antiviral immunity. Mol. Cell 45, 303-313 (2012).
    • (2012) Mol. Cell , vol.45 , pp. 303-313
    • Zhang, J.1
  • 11
    • 84912066885 scopus 로고    scopus 로고
    • RNA targeting by the type III-A crispr-cas csm complex of thermus thermophilus
    • Staals, R. H. et al. RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus. Mol. Cell 56, 518-530 (2014).
    • (2014) Mol. Cell , vol.56 , pp. 518-530
    • Staals, R.H.1
  • 12
    • 84930085853 scopus 로고    scopus 로고
    • Co-transcriptional DNA and RNA cleavage during type III crispr-cas immunity
    • Samai, P. et al. Co-transcriptional DNA and RNA cleavage during type III CRISPR-Cas immunity. Cell 161, 1164-1174 (2015).
    • (2015) Cell , vol.161 , pp. 1164-1174
    • Samai, P.1
  • 13
    • 84878211288 scopus 로고    scopus 로고
    • The tracrrna and cas9 families of type II crispr-cas immunity systems
    • Chylinski, K., Le Rhun, A. & Charpentier, E. The tracrRNA and Cas9 families of type II CRISPR-Cas immunity systems. RNA Biol. 10, 726-737 (2013).
    • (2013) RNA Biol , vol.10 , pp. 726-737
    • Chylinski, K.1    Le Rhun, A.2    Charpentier, E.3
  • 14
    • 79953250082 scopus 로고    scopus 로고
    • Crispr RNA maturation by trans-encoded small RNA and host factor rnase III
    • Deltcheva, E. et al. CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471, 602-607 (2011).
    • (2011) Nature , vol.471 , pp. 602-607
    • Deltcheva, E.1
  • 15
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek, M. et al. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337, 816-821 (2012).
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1
  • 16
    • 84975678715 scopus 로고    scopus 로고
    • Cpf1 is a single RNA-guided endonuclease of a class 2 crispr-cas system
    • Zetsche, B. et al. Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system. Cell 163, 759-771 (2015).
    • (2015) Cell , vol.163 , pp. 759-771
    • Zetsche, B.1
  • 17
    • 84875366919 scopus 로고    scopus 로고
    • First indication for a functional crispr/cas system in francisella tularensis
    • Schunder, E., Rydzewski, K., Grunow, R. & Heuner, K. First indication for a functional CRISPR/Cas system in Francisella tularensis. Int. J. Med. Microbiol. 303, 51-60 (2013).
    • (2013) Int. J. Med. Microbiol , vol.303 , pp. 51-60
    • Schunder, E.1    Rydzewski, K.2    Grunow, R.3    Heuner, K.4
  • 18
    • 84944449180 scopus 로고    scopus 로고
    • An updated evolutionary classification of crispr-cas systems
    • Makarova, K. S. et al. An updated evolutionary classification of CRISPR-Cas systems. Nature Rev. Microbiol. 13, 722-736 (2015).
    • (2015) Nature Rev. Microbiol , vol.13 , pp. 722-736
    • Makarova, K.S.1
  • 19
    • 84947736727 scopus 로고    scopus 로고
    • Discovery and functional characterization of diverse class 2 crispr-cas systems
    • Shmakov, S. et al. Discovery and functional characterization of diverse class 2 CRISPR-Cas systems. Mol. Cell 60, 385-397 (2015).
    • (2015) Mol. Cell , vol.60 , pp. 385-397
    • Shmakov, S.1
  • 20
    • 77956498326 scopus 로고    scopus 로고
    • Sequenceand structure-specific RNA processing by a crispr endonuclease
    • Haurwitz, R. E., Jinek, M., Wiedenheft, B., Zhou, K. & Doudna, J. A. Sequenceand structure-specific RNA processing by a CRISPR endonuclease. Science 329, 1355-1358 (2010).
    • (2010) Science , vol.329 , pp. 1355-1358
    • Haurwitz, R.E.1    Jinek, M.2    Wiedenheft, B.3    Zhou, K.4    Doudna, J.A.5
  • 21
    • 84964831029 scopus 로고    scopus 로고
    • The crystal structure of cpf1 in complex with crispr RNA
    • (20 April
    • Dong, D. et al. The crystal structure of Cpf1 in complex with CRISPR RNA. Nature http://dx.doi.org/10.1038/nature17944 (20 April 2016).
    • (2016) Nature
    • Dong, D.1
  • 22
    • 84933574487 scopus 로고    scopus 로고
    • Cas9-guide RNA complex preorganized for target DNA recognition
    • Jiang, F., Zhou, K., Ma, L., Gressel, S. & Doudna, J. A. A. Cas9-guide RNA complex preorganized for target DNA recognition. Science 348, 1477-1481 (2015).
    • (2015) Science , vol.348 , pp. 1477-1481
    • Jiang, F.1    Zhou, K.2    Ma, L.3    Gressel, S.4    Doudna, J.A.A.5
  • 23
    • 84896733529 scopus 로고    scopus 로고
    • Crystal structure of cas9 in complex with guide RNA and target DNA
    • Nishimasu, H. et al. Crystal structure of Cas9 in complex with guide RNA and target DNA. Cell 156, 935-949 (2014).
    • (2014) Cell , vol.156 , pp. 935-949
    • Nishimasu, H.1
  • 24
    • 84895871173 scopus 로고    scopus 로고
    • DNA interrogation by the crispr RNA-guided endonuclease cas9
    • Sternberg, S. H., Redding, S., Jinek, M., Greene, E. C. & Doudna, J. A. DNA interrogation by the CRISPR RNA-guided endonuclease Cas9. Nature 507, 62-67 (2014).
    • (2014) Nature , vol.507 , pp. 62-67
    • Sternberg, S.H.1    Redding, S.2    Jinek, M.3    Greene, E.C.4    Doudna, J.A.5
  • 25
    • 84903975702 scopus 로고    scopus 로고
    • Direct observation of r-loop formation by single RNA-guided cas9 and cascade effector complexes
    • Szczelkun, M. D. et al. Direct observation of R-loop formation by single RNA-guided Cas9 and Cascade effector complexes. Proc. Natl Acad. Sci. USA 111, 9798-9803 (2014).
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. 9798-9803
    • Szczelkun, M.D.1
  • 27
    • 55549123481 scopus 로고    scopus 로고
    • An equivalent metal ion in one-And two-metal-ion catalysis
    • Yang, W. An equivalent metal ion in one-And two-metal-ion catalysis. Nature Struct. Mol. Biol. 15, 1228-1231 (2008).
    • (2008) Nature Struct. Mol. Biol , vol.15 , pp. 1228-1231
    • Yang, W.1
  • 28
    • 84890058227 scopus 로고    scopus 로고
    • Increasing cleavage specificity and activity of restriction endonuclease kpni
    • Vasu, K. et al. Increasing cleavage specificity and activity of restriction endonuclease KpnI. Nucleic Acids Res. 41, 9812-9824 (2013).
    • (2013) Nucleic Acids Res , vol.41 , pp. 9812-9824
    • Vasu, K.1
  • 29
    • 84867818484 scopus 로고    scopus 로고
    • Double-stranded endonuclease activity in bacillus halodurans clustered regularly interspaced short palindromic repeats (crispr)-Associated cas2 protein
    • Nam, K. H. et al. Double-stranded endonuclease activity in Bacillus halodurans clustered regularly interspaced short palindromic repeats (CRISPR)-Associated Cas2 protein. J. Biol. Chem. 287, 35943-35952 (2012).
    • (2012) J. Biol. Chem , vol.287 , pp. 35943-35952
    • Nam, K.H.1
  • 30
    • 84898952727 scopus 로고    scopus 로고
    • Active site plasticity enables metaldependent tuning of cas5d nuclease activity in crispr-cas type i-c system
    • Punetha, A., Sivathanu, R. & Anand, B. Active site plasticity enables metaldependent tuning of Cas5d nuclease activity in CRISPR-Cas type I-C system. Nucleic Acids Res. 42, 3846-3856 (2014).
    • (2014) Nucleic Acids Res , vol.42 , pp. 3846-3856
    • Punetha, A.1    Sivathanu, R.2    Anand, B.3
  • 31
    • 77951770756 scopus 로고    scopus 로고
    • Bedtools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A. R. & Hall, I. M. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 32
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J. T. et al. Integrative genomics viewer. Nature Biotechnol. 29, 24-26 (2011).
    • (2011) Nature Biotechnol , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 33
    • 84875634162 scopus 로고    scopus 로고
    • Integrative genomics viewer (igv): High-performance genomics data visualization and exploration
    • Thorvaldsdóttir, H., Robinson, J. T. & Mesirov, J. P. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief. Bioinform. 14, 178-192 (2013).
    • (2013) Brief. Bioinform , vol.14 , pp. 178-192
    • Thorvaldsdóttir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 34
    • 0023953676 scopus 로고
    • Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro
    • Sampson, J. R. & Uhlenbeck, O. C. Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro. Proc. Natl Acad. Sci. USA 85, 1033-1037 (1988).
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 1033-1037
    • Sampson, J.R.1    Uhlenbeck, O.C.2
  • 36
    • 0035062788 scopus 로고    scopus 로고
    • Subinhibitory clindamycin differentially inhibits transcription of exoprotein genes in staphylococcus aureus
    • Herbert, S., Barry, P. & Novick, R. P. Subinhibitory clindamycin differentially inhibits transcription of exoprotein genes in Staphylococcus aureus. Infect. Immun. 69, 2996-3003 (2001).
    • (2001) Infect. Immun , vol.69 , pp. 2996-3003
    • Herbert, S.1    Barry, P.2    Novick, R.P.3
  • 37
    • 33847386673 scopus 로고    scopus 로고
    • Translational control and target recognition by Escherichia coli small rnas in vivo
    • Urban, J. H. & Vogel, J. Translational control and target recognition by Escherichia coli small RNAs in vivo. Nucleic Acids Res. 35, 1018-1037 (2007).
    • (2007) Nucleic Acids Res , vol.35 , pp. 1018-1037
    • Urban, J.H.1    Vogel, J.2
  • 38
    • 44949098384 scopus 로고    scopus 로고
    • Improved northern blot method for enhanced detection of small RNA
    • Pall, G. S. & Hamilton, A. J. Improved northern blot method for enhanced detection of small RNA. Nature Protocols 3, 1077-1084 (2008).
    • (2008) Nature Protocols , vol.3 , pp. 1077-1084
    • Pall, G.S.1    Hamilton, A.J.2
  • 39
    • 0030801002 scopus 로고    scopus 로고
    • Gapped blast and psi-blast: A new generation of protein database search programs
    • Altschul, S. F. et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 (1997).
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 40
    • 13244255415 scopus 로고    scopus 로고
    • Muscle: A multiple sequence alignment method with reduced time and space complexity
    • Edgar, R. C. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5, 113 (2004).
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 41
    • 65449188232 scopus 로고    scopus 로고
    • Jalview version 2-A multiple sequence alignment editor and analysis workbench
    • Waterhouse, A. M., Procter, J. B., Martin, D. M., Clamp, M. & Barton, G. J. Jalview Version 2-A multiple sequence alignment editor and analysis workbench. Bioinformatics 25, 1189-1191 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1189-1191
    • Waterhouse, A.M.1    Procter, J.B.2    Martin, D.M.3    Clamp, M.4    Barton, G.J.5
  • 42
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J. T. et al. Integrative genomics viewer. Nature Biotechnol. 29, 24-26 (2011).
    • (2011) Nature Biotechnol , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 44
    • 67650727366 scopus 로고    scopus 로고
    • Varna: Interactive drawing and editing of the RNA secondary structure
    • Darty, K., Denise, A. & Ponty, Y. VARNA: Interactive drawing and editing of the RNA secondary structure. Bioinformatics 25, 1974-1975 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1974-1975
    • Darty, K.1    Denise, A.2    Ponty, Y.3


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