메뉴 건너뛰기




Volumn 44, Issue 4, 2016, Pages 1789-1799

Multiple nucleic acid cleavage modes in divergent type III CRISPR systems

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL PROTEIN; CMR COMPLEX; CSM COMPLEX; UNCLASSIFIED DRUG; ARCHAEAL RNA; DNA; GUIDE RNA;

EID: 84960540026     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkw020     Document Type: Article
Times cited : (48)

References (42)
  • 1
    • 84939232427 scopus 로고    scopus 로고
    • DNA and RNA interference mechanisms by CRISPR-Cas surveillance complexes
    • Plagens, A., Richter, H., Charpentier, E. and Randau, L. (2015) DNA and RNA interference mechanisms by CRISPR-Cas surveillance complexes. FEMS Microbiol. Rev., 39, 442-463.
    • (2015) FEMS Microbiol. Rev. , vol.39 , pp. 442-463
    • Plagens, A.1    Richter, H.2    Charpentier, E.3    Randau, L.4
  • 2
    • 84903471734 scopus 로고    scopus 로고
    • Adapting to new threats: The generation of memory by CRISPR-Cas immune systems
    • Heler, R., Marraffini, L.A. and Bikard, D. (2014) Adapting to new threats: the generation of memory by CRISPR-Cas immune systems. Mol. Microbiol., 93, 1-9.
    • (2014) Mol. Microbiol. , vol.93 , pp. 1-9
    • Heler, R.1    Marraffini, L.A.2    Bikard, D.3
  • 3
    • 84942746261 scopus 로고    scopus 로고
    • Biogenesis pathways of RNA guides in archaeal and bacterial CRISPR-Cas adaptive immunity
    • Charpentier, E., Richter, H., van der Oost, J. and White, M.F. (2015) Biogenesis pathways of RNA guides in archaeal and bacterial CRISPR-Cas adaptive immunity. FEMS Microbiol. Rev., 39, 428-441.
    • (2015) FEMS Microbiol. Rev. , vol.39 , pp. 428-441
    • Charpentier, E.1    Richter, H.2    Van Der Oost, J.3    White, M.F.4
  • 4
    • 84923279931 scopus 로고    scopus 로고
    • The structural biology of CRISPR-Cas systems
    • Jiang, F. and Doudna, J.A. (2015) The structural biology of CRISPR-Cas systems. Curr. Opin. Struct. Biol., 30, 100-111.
    • (2015) Curr. Opin. Struct. Biol. , vol.30 , pp. 100-111
    • Jiang, F.1    Doudna, J.A.2
  • 7
    • 79960554003 scopus 로고    scopus 로고
    • Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
    • Makarova, K.S., Aravind, L., Wolf, Y.I. and Koonin, E.V. (2011) Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems. Biology direct, 6, 38.
    • (2011) Biology Direct , vol.6 , pp. 38
    • Makarova, K.S.1    Aravind, L.2    Wolf, Y.I.3    Koonin, E.V.4
  • 8
    • 79958754524 scopus 로고    scopus 로고
    • Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE)
    • Lintner, N.G., Kerou, M., Brumfield, S.K., Graham, S., Liu, H., Naismith, J.H., Sdano, M., Peng, N., She, Q., Copie, V. et al. (2011) Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE). J. Biol. Chem., 286, 21643-21656.
    • (2011) J. Biol. Chem. , vol.286 , pp. 21643-21656
    • Lintner, N.G.1    Kerou, M.2    Brumfield, S.K.3    Graham, S.4    Liu, H.5    Naismith, J.H.6    Sdano, M.7    Peng, N.8    She, Q.9    Copie, V.10
  • 15
    • 84899048370 scopus 로고    scopus 로고
    • CRISPR-mediated targeted mRNA degradation in the archaeon Sulfolobus solfataricus
    • Zebec, Z., Manica, A., Zhang, J., White, M.F. and Schleper, C. (2014) CRISPR-mediated targeted mRNA degradation in the archaeon Sulfolobus solfataricus. Nucleic Acids Res., 42, 5280-5288.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 5280-5288
    • Zebec, Z.1    Manica, A.2    Zhang, J.3    White, M.F.4    Schleper, C.5
  • 16
    • 84941143049 scopus 로고    scopus 로고
    • An archaeal CRISPR type III-B system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference
    • Peng, W., Feng, M., Feng, X., Liang, Y.X. and She, Q. (2015) An archaeal CRISPR type III-B system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference. Nucleic Acids Res., 43, 406-417.
    • (2015) Nucleic Acids Res. , vol.43 , pp. 406-417
    • Peng, W.1    Feng, M.2    Feng, X.3    Liang, Y.X.4    She, Q.5
  • 17
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
    • Marraffini, L.A. and Sontheimer, E.J. (2008) CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science, 322, 1843-1845.
    • (2008) Science , vol.322 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 18
    • 84930190097 scopus 로고    scopus 로고
    • Crystal structure of the Csm1 subunit of the Csm complex and its single-stranded DNA-specific nuclease activity
    • Jung, T.Y., An, Y., Park, K.H., Lee, M.H., Oh, B.H. and Woo, E. (2015) Crystal structure of the Csm1 subunit of the Csm complex and its single-stranded DNA-specific nuclease activity. Structure, 23, 782-790.
    • (2015) Structure , vol.23 , pp. 782-790
    • Jung, T.Y.1    An, Y.2    Park, K.H.3    Lee, M.H.4    Oh, B.H.5    Woo, E.6
  • 23
    • 84941029060 scopus 로고    scopus 로고
    • Cmr4 is the slicer in the RNA-targeting Cmr CRISPR complex
    • Zhu, X. and Ye, K.Q. (2015) Cmr4 is the slicer in the RNA-targeting Cmr CRISPR complex. Nucleic Acids Res., 43, 1257-1267.
    • (2015) Nucleic Acids Res. , vol.43 , pp. 1257-1267
    • Zhu, X.1    Ye, K.Q.2
  • 24
    • 84928925211 scopus 로고    scopus 로고
    • Crystal structure of the CRISPR-Cas RNA silencing Cmr complex bound to a target analog
    • Osawa, T., Inanaga, H., Sato, C. and Numata, T. (2015) Crystal structure of the CRISPR-Cas RNA silencing Cmr complex bound to a target analog. Mol. Cell, 58, 418-430.
    • (2015) Mol. Cell , vol.58 , pp. 418-430
    • Osawa, T.1    Inanaga, H.2    Sato, C.3    Numata, T.4
  • 25
    • 84907204893 scopus 로고    scopus 로고
    • Structural biology. Crystal structure of a CRISPR RNA-guided surveillance complex bound to a ssDNA target
    • Mulepati, S., Heroux, A. and Bailey, S. (2014) Structural biology. Crystal structure of a CRISPR RNA-guided surveillance complex bound to a ssDNA target. Science, 345, 1479-1484.
    • (2014) Science , vol.345 , pp. 1479-1484
    • Mulepati, S.1    Heroux, A.2    Bailey, S.3
  • 26
    • 84946498330 scopus 로고    scopus 로고
    • A Conserved Structural Chassis for Mounting Versatile CRISPR RNA-Guided Immune Responses
    • Jackson, R.N. and Wiedenheft, B. (2015) A Conserved Structural Chassis for Mounting Versatile CRISPR RNA-Guided Immune Responses. Mol. Cell, 58, 722-728.
    • (2015) Mol. Cell , vol.58 , pp. 722-728
    • Jackson, R.N.1    Wiedenheft, B.2
  • 27
    • 84874195392 scopus 로고    scopus 로고
    • A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus
    • Deng, L., Garrett, R.A., Shah, S.A., Peng, X. and She, Q. (2013) A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus. Mol. Microbiol., 87, 1088-1099.
    • (2013) Mol. Microbiol. , vol.87 , pp. 1088-1099
    • Deng, L.1    Garrett, R.A.2    Shah, S.A.3    Peng, X.4    She, Q.5
  • 28
    • 84908456823 scopus 로고    scopus 로고
    • Conditional tolerance of temperate phages via transcription-dependent CRISPR-Cas targeting
    • Goldberg, G.W., Jiang, W.Y., Bikard, D. and Marraffini, L.A. (2014) Conditional tolerance of temperate phages via transcription-dependent CRISPR-Cas targeting. Nature, 514, 633-637.
    • (2014) Nature , vol.514 , pp. 633-637
    • Goldberg, G.W.1    Jiang, W.Y.2    Bikard, D.3    Marraffini, L.A.4
  • 29
    • 84930085853 scopus 로고    scopus 로고
    • Co-transcriptional DNA and RNA Cleavage during Type III CRISPR-Cas Immunity
    • Samai, P., Pyenson, N., Jiang, W., Goldberg, G.W., Hatoum-Aslan, A. and Marraffini, L.A. (2015) Co-transcriptional DNA and RNA Cleavage during Type III CRISPR-Cas Immunity. Cell, 161, 1164-1174.
    • (2015) Cell , vol.161 , pp. 1164-1174
    • Samai, P.1    Pyenson, N.2    Jiang, W.3    Goldberg, G.W.4    Hatoum-Aslan, A.5    Marraffini, L.A.6
  • 30
    • 84893294172 scopus 로고    scopus 로고
    • Staphylococcus epidermidis Csm1 is a 3'-5' exonuclease
    • Ramia, N.F., Tang, L., Cocozaki, A.I. and Li, H. (2014) Staphylococcus epidermidis Csm1 is a 3'-5' exonuclease. Nucleic Acids Res., 42, 1129-1138.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 1129-1138
    • Ramia, N.F.1    Tang, L.2    Cocozaki, A.I.3    Li, H.4
  • 31
    • 34247515309 scopus 로고    scopus 로고
    • Identification of a system required for the functional surface localization of sugar binding proteins with class III signal peptides in Sulfolobus solfataricus
    • Zolghadr, B., Weber, S., Szabo, Z., Driessen, A.J. and Albers, S.V. (2007) Identification of a system required for the functional surface localization of sugar binding proteins with class III signal peptides in Sulfolobus solfataricus. Mol. Microbiol., 64, 795-806.
    • (2007) Mol. Microbiol. , vol.64 , pp. 795-806
    • Zolghadr, B.1    Weber, S.2    Szabo, Z.3    Driessen, A.J.4    Albers, S.V.5
  • 33
    • 56349140518 scopus 로고    scopus 로고
    • A simple and efficient expression and purification system using two newly constructed vectors
    • Liu, H. and Naismith, J.H. (2009) A simple and efficient expression and purification system using two newly constructed vectors. Protein Expr. Purif., 63, 102-111.
    • (2009) Protein Expr. Purif. , vol.63 , pp. 102-111
    • Liu, H.1    Naismith, J.H.2
  • 35
    • 84903202938 scopus 로고    scopus 로고
    • Cas6 specificity and CRISPR RNA loading in a complex CRISPR-Cas system
    • Sokolowski, R.D., Graham, S. and White, M.F. (2014) Cas6 specificity and CRISPR RNA loading in a complex CRISPR-Cas system. Nucleic Acids Res., 42, 6532-6541.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 6532-6541
    • Sokolowski, R.D.1    Graham, S.2    White, M.F.3
  • 36
    • 66949142420 scopus 로고    scopus 로고
    • The crenarchaeal DNA damage-inducible transcription factor B paralogue TFB3 is a general activator of transcription
    • Paytubi, S. and White, M.F. (2009) The crenarchaeal DNA damage-inducible transcription factor B paralogue TFB3 is a general activator of transcription. Mol. Microbiol., 72, 1487-1499.
    • (2009) Mol. Microbiol. , vol.72 , pp. 1487-1499
    • Paytubi, S.1    White, M.F.2
  • 37
    • 84863205849 scopus 로고    scopus 로고
    • NIH Image to ImageJ: 25 years of image analysis
    • Schneider, C.A., Rasband, W.S. and Eliceiri, K.W. (2012) NIH Image to ImageJ: 25 years of image analysis. Nat. Methods, 9, 671-675.
    • (2012) Nat. Methods , vol.9 , pp. 671-675
    • Schneider, C.A.1    Rasband, W.S.2    Eliceiri, K.W.3
  • 38
    • 84874936854 scopus 로고    scopus 로고
    • Structure of the Cmr2-Cmr3 subcomplex of the Cmr RNA silencing complex
    • Shao, Y., Cocozaki, A.I., Ramia, N.F., Terns, R.M., Terns, M.P. and Li, H. (2013) Structure of the Cmr2-Cmr3 subcomplex of the Cmr RNA silencing complex. Structure, 21, 376-384.
    • (2013) Structure , vol.21 , pp. 376-384
    • Shao, Y.1    Cocozaki, A.I.2    Ramia, N.F.3    Terns, R.M.4    Terns, M.P.5    Li, H.6
  • 40
    • 84908431900 scopus 로고    scopus 로고
    • Target RNA capture and cleavage by the Cmr type III-B CRISPR-Cas effector complex
    • Hale, C.R., Cocozaki, A., Li, H., Terns, R.M. and Terns, M.P. (2014) Target RNA capture and cleavage by the Cmr type III-B CRISPR-Cas effector complex. Genes Dev., 28, 2432-2443.
    • (2014) Genes Dev. , vol.28 , pp. 2432-2443
    • Hale, C.R.1    Cocozaki, A.2    Li, H.3    Terns, R.M.4    Terns, M.P.5
  • 41
    • 84893294172 scopus 로고    scopus 로고
    • Staphylococcus epidermidis Csm1 is a 3'-5' exonuclease
    • Ramia, N.F., Tang, L., Cocozaki, A.I. and Li, H. (2013) Staphylococcus epidermidis Csm1 is a 3'-5' exonuclease. Nucleic Acids Res., 42, 1129-1138.
    • (2013) Nucleic Acids Res. , vol.42 , pp. 1129-1138
    • Ramia, N.F.1    Tang, L.2    Cocozaki, A.I.3    Li, H.4
  • 42
    • 84866859751 scopus 로고    scopus 로고
    • Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
    • Gasiunas, G., Barrangou, R., Horvath, P. and Siksnys, V. (2012) Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc. Natl. Acad. Sci. U.S.A., 109, E2579-E2586.
    • (2012) Proc. Natl. Acad. Sci. U.S.A. , vol.109 , pp. E2579-E2586
    • Gasiunas, G.1    Barrangou, R.2    Horvath, P.3    Siksnys, V.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.