-
1
-
-
0038699591
-
High-throughput classification of yeast mutants for functional genomics using metabolic footprinting
-
Allen, J., Davey, H.M., Broadhurst, D., Heald, J.K., Rowland, J.J., Oliver, S.G., Kell, D.B., High-throughput classification of yeast mutants for functional genomics using metabolic footprinting. Nat. Biotechnol. 21 (2003), 692–696.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 692-696
-
-
Allen, J.1
Davey, H.M.2
Broadhurst, D.3
Heald, J.K.4
Rowland, J.J.5
Oliver, S.G.6
Kell, D.B.7
-
2
-
-
84855753470
-
MIPHENO: data normalization for high throughput metabolite analysis
-
Bell, S.M., Burgoon, L.D., Last, R.L., MIPHENO: data normalization for high throughput metabolite analysis. BMC Bioinformatics, 13, 2012, 10.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 10
-
-
Bell, S.M.1
Burgoon, L.D.2
Last, R.L.3
-
3
-
-
69749113579
-
The Vam6 GEF controls TORC1 by activating the EGO complex
-
Binda, M., Péli-Gulli, M.-P., Bonfils, G., Panchaud, N., Urban, J., Sturgill, T.W., Loewith, R., De Virgilio, C., The Vam6 GEF controls TORC1 by activating the EGO complex. Mol. Cell 35 (2009), 563–573.
-
(2009)
Mol. Cell
, vol.35
, pp. 563-573
-
-
Binda, M.1
Péli-Gulli, M.-P.2
Bonfils, G.3
Panchaud, N.4
Urban, J.5
Sturgill, T.W.6
Loewith, R.7
De Virgilio, C.8
-
4
-
-
81255197643
-
Yeast: an experimental organism for 21st Century biology
-
Botstein, D., Fink, G.R., Yeast: an experimental organism for 21st Century biology. Genetics 189 (2011), 695–704.
-
(2011)
Genetics
, vol.189
, pp. 695-704
-
-
Botstein, D.1
Fink, G.R.2
-
5
-
-
77953077420
-
A global protein kinase and phosphatase interaction network in yeast
-
Breitkreutz, A., Choi, H., Sharom, J.R., Boucher, L., Neduva, V., Larsen, B., Lin, Z.-Y., Breitkreutz, B.-J., Stark, C., Liu, G., et al. A global protein kinase and phosphatase interaction network in yeast. Science 328 (2010), 1043–1046.
-
(2010)
Science
, vol.328
, pp. 1043-1046
-
-
Breitkreutz, A.1
Choi, H.2
Sharom, J.R.3
Boucher, L.4
Neduva, V.5
Larsen, B.6
Lin, Z.-Y.7
Breitkreutz, B.-J.8
Stark, C.9
Liu, G.10
-
6
-
-
48449087454
-
A comprehensive strategy enabling high-resolution functional analysis of the yeast genome
-
Breslow, D.K., Cameron, D.M., Collins, S.R., Schuldiner, M., Stewart-Ornstein, J., Newman, H.W., Braun, S., Madhani, H.D., Krogan, N.J., Weissman, J.S., A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat. Methods 5 (2008), 711–718.
-
(2008)
Nat. Methods
, vol.5
, pp. 711-718
-
-
Breslow, D.K.1
Cameron, D.M.2
Collins, S.R.3
Schuldiner, M.4
Stewart-Ornstein, J.5
Newman, H.W.6
Braun, S.7
Madhani, H.D.8
Krogan, N.J.9
Weissman, J.S.10
-
7
-
-
84862275111
-
Rab5 proteins regulate activation and localization of target of rapamycin complex 1
-
Bridges, D., Fisher, K., Zolov, S.N., Xiong, T., Inoki, K., Weisman, L.S., Saltiel, A.R., Rab5 proteins regulate activation and localization of target of rapamycin complex 1. J. Biol. Chem. 287 (2012), 20913–20921.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 20913-20921
-
-
Bridges, D.1
Fisher, K.2
Zolov, S.N.3
Xiong, T.4
Inoki, K.5
Weisman, L.S.6
Saltiel, A.R.7
-
8
-
-
84941145210
-
The BioGRID interaction database: 2015 update
-
Chatr-Aryamontri, A., Breitkreutz, B.-J., Oughtred, R., Boucher, L., Heinicke, S., Chen, D., Stark, C., Breitkreutz, A., Kolas, N., O'Donnell, L., et al. The BioGRID interaction database: 2015 update. Nucleic Acids Res. 43 (2015), D470–D478.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D470-D478
-
-
Chatr-Aryamontri, A.1
Breitkreutz, B.-J.2
Oughtred, R.3
Boucher, L.4
Heinicke, S.5
Chen, D.6
Stark, C.7
Breitkreutz, A.8
Kolas, N.9
O'Donnell, L.10
-
9
-
-
84858588614
-
Saccharomyces Genome Database: the genomics resource of budding yeast
-
Cherry, J.M., Hong, E.L., Amundsen, C., Balakrishnan, R., Binkley, G., Chan, E.T., Christie, K.R., Costanzo, M.C., Dwight, S.S., Engel, S.R., et al. Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Res. 40 (2012), D700–D705.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D700-D705
-
-
Cherry, J.M.1
Hong, E.L.2
Amundsen, C.3
Balakrishnan, R.4
Binkley, G.5
Chan, E.T.6
Christie, K.R.7
Costanzo, M.C.8
Dwight, S.S.9
Engel, S.R.10
-
10
-
-
84913655250
-
Ciba foundation symposium on regulation of cell metabolism
-
J. & A. Churchill Ltd London
-
Wolstenholme, G.E.W., O'Connor, C.M., Ciba foundation symposium on regulation of cell metabolism. 1959, J. & A. Churchill Ltd, London.
-
(1959)
-
-
Wolstenholme, G.E.W.1
O'Connor, C.M.2
-
11
-
-
84896696867
-
Nutrient sensing and signaling in the yeast Saccharomyces cerevisiae
-
Conrad, M., Schothorst, J., Kankipati, H.N., Van Zeebroeck, G., Rubio-Texeira, M., Thevelein, J.M., Nutrient sensing and signaling in the yeast Saccharomyces cerevisiae. FEMS Microbiol. Rev. 38 (2014), 254–299.
-
(2014)
FEMS Microbiol. Rev.
, vol.38
, pp. 254-299
-
-
Conrad, M.1
Schothorst, J.2
Kankipati, H.N.3
Van Zeebroeck, G.4
Rubio-Texeira, M.5
Thevelein, J.M.6
-
12
-
-
84877927481
-
mTOR in aging, metabolism, and cancer
-
Cornu, M., Albert, V., Hall, M.N., mTOR in aging, metabolism, and cancer. Curr. Opin. Genet. Dev. 23 (2013), 53–62.
-
(2013)
Curr. Opin. Genet. Dev.
, vol.23
, pp. 53-62
-
-
Cornu, M.1
Albert, V.2
Hall, M.N.3
-
13
-
-
84973443037
-
Assembly of lipoic acid on its cognate enzymes: an extraordinary and essential biosynthetic pathway
-
Cronan, J.E., Assembly of lipoic acid on its cognate enzymes: an extraordinary and essential biosynthetic pathway. Microbiol. Mol. Biol. Rev. 80 (2016), 429–450.
-
(2016)
Microbiol. Mol. Biol. Rev.
, vol.80
, pp. 429-450
-
-
Cronan, J.E.1
-
14
-
-
84862169505
-
YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities
-
de Boer, C.G., Hughes, T.R., YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities. Nucleic Acids Res. 40 (2012), D169–D179.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D169-D179
-
-
de Boer, C.G.1
Hughes, T.R.2
-
15
-
-
17344381954
-
Multiple roles of Tap42 in mediating rapamycin-induced transcriptional changes in yeast
-
Düvel, K., Santhanam, A., Garrett, S., Schneper, L., Broach, J.R., Multiple roles of Tap42 in mediating rapamycin-induced transcriptional changes in yeast. Mol. Cell 11 (2003), 1467–1478.
-
(2003)
Mol. Cell
, vol.11
, pp. 1467-1478
-
-
Düvel, K.1
Santhanam, A.2
Garrett, S.3
Schneper, L.4
Broach, J.R.5
-
16
-
-
3042725387
-
Transcriptional profiling of extracellular amino acid sensing in Saccharomyces cerevisiae and the role of Stp1p and Stp2p
-
Eckert-Boulet, N., Nielsen, P.S., Friis, C., dos Santos, M.M., Nielsen, J., Kielland-Brandt, M.C., Regenberg, B., Transcriptional profiling of extracellular amino acid sensing in Saccharomyces cerevisiae and the role of Stp1p and Stp2p. Yeast 21 (2004), 635–648.
-
(2004)
Yeast
, vol.21
, pp. 635-648
-
-
Eckert-Boulet, N.1
Nielsen, P.S.2
Friis, C.3
dos Santos, M.M.4
Nielsen, J.5
Kielland-Brandt, M.C.6
Regenberg, B.7
-
17
-
-
84887101681
-
Molecular architecture of a eukaryotic translational initiation complex
-
Fernández, I.S., Bai, X.-C., Hussain, T., Kelley, A.C., Lorsch, J.R., Ramakrishnan, V., Scheres, S.H.W., Molecular architecture of a eukaryotic translational initiation complex. Science, 342, 2013, 1240585.
-
(2013)
Science
, vol.342
, pp. 1240585
-
-
Fernández, I.S.1
Bai, X.-C.2
Hussain, T.3
Kelley, A.C.4
Lorsch, J.R.5
Ramakrishnan, V.6
Scheres, S.H.W.7
-
18
-
-
76649110552
-
Delayed correlation of mRNA and protein expression in rapamycin-treated cells and a role for Ggc1 in cellular sensitivity to rapamycin
-
Fournier, M.L., Paulson, A., Pavelka, N., Mosley, A.L., Gaudenz, K., Bradford, W.D., Glynn, E., Li, H., Sardiu, M.E., Fleharty, B., et al. Delayed correlation of mRNA and protein expression in rapamycin-treated cells and a role for Ggc1 in cellular sensitivity to rapamycin. Mol. Cell. Proteomics 9 (2010), 271–284.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 271-284
-
-
Fournier, M.L.1
Paulson, A.2
Pavelka, N.3
Mosley, A.L.4
Gaudenz, K.5
Bradford, W.D.6
Glynn, E.7
Li, H.8
Sardiu, M.E.9
Fleharty, B.10
-
19
-
-
84887438140
-
Yeast metabolic and signaling genes are required for heat-shock survival and have little overlap with the heat-induced genes
-
Gibney, P.A., Lu, C., Caudy, A.A., Hess, D.C., Botstein, D., Yeast metabolic and signaling genes are required for heat-shock survival and have little overlap with the heat-induced genes. Proc. Natl. Acad. Sci. USA 110 (2013), E4393–E4402.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. E4393-E4402
-
-
Gibney, P.A.1
Lu, C.2
Caudy, A.A.3
Hess, D.C.4
Botstein, D.5
-
20
-
-
34147208413
-
Effect of 21 different nitrogen sources on global gene expression in the yeast Saccharomyces cerevisiae
-
Godard, P., Urrestarazu, A., Vissers, S., Kontos, K., Bontempi, G., van Helden, J., André, B., Effect of 21 different nitrogen sources on global gene expression in the yeast Saccharomyces cerevisiae. Mol. Cell. Biol. 27 (2007), 3065–3086.
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 3065-3086
-
-
Godard, P.1
Urrestarazu, A.2
Vissers, S.3
Kontos, K.4
Bontempi, G.5
van Helden, J.6
André, B.7
-
21
-
-
0028137771
-
TOR1 and TOR2 are structurally and functionally similar but not identical phosphatidylinositol kinase homologues in yeast
-
Helliwell, S.B., Wagner, P., Kunz, J., Deuter-Reinhard, M., Henriquez, R., Hall, M.N., TOR1 and TOR2 are structurally and functionally similar but not identical phosphatidylinositol kinase homologues in yeast. Mol. Biol. Cell 5 (1994), 105–118.
-
(1994)
Mol. Biol. Cell
, vol.5
, pp. 105-118
-
-
Helliwell, S.B.1
Wagner, P.2
Kunz, J.3
Deuter-Reinhard, M.4
Henriquez, R.5
Hall, M.N.6
-
22
-
-
84976905626
-
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
-
Huerta-Cepas, J., Szklarczyk, D., Forslund, K., Cook, H., Heller, D., Walter, M.C., Rattei, T., Mende, D.R., Sunagawa, S., Kuhn, M., et al. eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Nucleic Acids Res. 44:D1 (2016), D286–D293.
-
(2016)
Nucleic Acids Res.
, vol.44
, Issue.D1
, pp. D286-D293
-
-
Huerta-Cepas, J.1
Szklarczyk, D.2
Forslund, K.3
Cook, H.4
Heller, D.5
Walter, M.C.6
Rattei, T.7
Mende, D.R.8
Sunagawa, S.9
Kuhn, M.10
-
23
-
-
84962227074
-
Design and synthesis of a minimal bacterial genome
-
Hutchison, C.A. 3rd, Chuang, R.-Y., Noskov, V.N., Assad-Garcia, N., Deerinck, T.J., Ellisman, M.H., Gill, J., Kannan, K., Karas, B.J., Ma, L., et al. Design and synthesis of a minimal bacterial genome. Science, 351, 2016, aad6253.
-
(2016)
Science
, vol.351
, pp. aad6253
-
-
Hutchison, C.A.1
Chuang, R.-Y.2
Noskov, V.N.3
Assad-Garcia, N.4
Deerinck, T.J.5
Ellisman, M.H.6
Gill, J.7
Kannan, K.8
Karas, B.J.9
Ma, L.10
-
24
-
-
84899514789
-
Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors
-
Kemmeren, P., Sameith, K., van de Pasch, L.A.L., Benschop, J.J., Lenstra, T.L., Margaritis, T., O'Duibhir, E., Apweiler, E., van Wageningen, S., Ko, C.W., et al. Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors. Cell 157 (2014), 740–752.
-
(2014)
Cell
, vol.157
, pp. 740-752
-
-
Kemmeren, P.1
Sameith, K.2
van de Pasch, L.A.L.3
Benschop, J.J.4
Lenstra, T.L.5
Margaritis, T.6
O'Duibhir, E.7
Apweiler, E.8
van Wageningen, S.9
Ko, C.W.10
-
25
-
-
84951191098
-
A LAPF/phafin1-like protein regulates TORC1 and lysosomal membrane permeabilization in response to endoplasmic reticulum membrane stress
-
Kim, A., Cunningham, K.W., A LAPF/phafin1-like protein regulates TORC1 and lysosomal membrane permeabilization in response to endoplasmic reticulum membrane stress. Mol. Biol. Cell 26 (2015), 4631–4645.
-
(2015)
Mol. Biol. Cell
, vol.26
, pp. 4631-4645
-
-
Kim, A.1
Cunningham, K.W.2
-
26
-
-
84891796667
-
YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae
-
Kim, H., Shin, J., Kim, E., Kim, H., Hwang, S., Shim, J.E., Lee, I., YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae. Nucleic Acids Res. 42 (2014), D731–D736.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D731-D736
-
-
Kim, H.1
Shin, J.2
Kim, E.3
Kim, H.4
Hwang, S.5
Shim, J.E.6
Lee, I.7
-
27
-
-
84959472209
-
Vesicular trafficking systems impact TORC1-controlled transcriptional programs in Saccharomyces cerevisiae
-
Kingsbury, J.M., Cardenas, M.E., Vesicular trafficking systems impact TORC1-controlled transcriptional programs in Saccharomyces cerevisiae. G3 (Bethesda) 6 (2016), 641–652.
-
(2016)
G3 (Bethesda)
, vol.6
, pp. 641-652
-
-
Kingsbury, J.M.1
Cardenas, M.E.2
-
28
-
-
25844463806
-
Metabolic functions of duplicate genes in Saccharomyces cerevisiae
-
Kuepfer, L., Sauer, U., Blank, L.M., Metabolic functions of duplicate genes in Saccharomyces cerevisiae. Genome Res. 15 (2005), 1421–1430.
-
(2005)
Genome Res.
, vol.15
, pp. 1421-1430
-
-
Kuepfer, L.1
Sauer, U.2
Blank, L.M.3
-
29
-
-
40049099114
-
Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R
-
Langfelder, P., Zhang, B., Horvath, S., Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R. Bioinformatics 24 (2008), 719–720.
-
(2008)
Bioinformatics
, vol.24
, pp. 719-720
-
-
Langfelder, P.1
Zhang, B.2
Horvath, S.3
-
30
-
-
84858183302
-
Regulation of amino acid, nucleotide, and phosphate metabolism in Saccharomyces cerevisiae
-
Ljungdahl, P.O., Daignan-Fornier, B., Regulation of amino acid, nucleotide, and phosphate metabolism in Saccharomyces cerevisiae. Genetics 190 (2012), 885–929.
-
(2012)
Genetics
, vol.190
, pp. 885-929
-
-
Ljungdahl, P.O.1
Daignan-Fornier, B.2
-
31
-
-
83455177213
-
Target of rapamycin (TOR) in nutrient signaling and growth control
-
Loewith, R., Hall, M.N., Target of rapamycin (TOR) in nutrient signaling and growth control. Genetics 189 (2011), 1177–1201.
-
(2011)
Genetics
, vol.189
, pp. 1177-1201
-
-
Loewith, R.1
Hall, M.N.2
-
32
-
-
84899575287
-
Prebiotic metabolic networks?
-
Luisi, P.L., Prebiotic metabolic networks?. Mol. Syst. Biol., 10, 2014, 729.
-
(2014)
Mol. Syst. Biol.
, vol.10
, pp. 729
-
-
Luisi, P.L.1
-
33
-
-
84873272765
-
Identification of genes affecting vacuole membrane fragmentation in Saccharomyces cerevisiae
-
Michaillat, L., Mayer, A., Identification of genes affecting vacuole membrane fragmentation in Saccharomyces cerevisiae. PLoS ONE, 8, 2013, e54160.
-
(2013)
PLoS ONE
, vol.8
, pp. e54160
-
-
Michaillat, L.1
Mayer, A.2
-
34
-
-
0038724494
-
Consensus clustering: a resampling-based method for class discovery and visualization of gene expression microarray data
-
Monti, S., Tamayo, P., Mesirov, J., Golub, T., Consensus clustering: a resampling-based method for class discovery and visualization of gene expression microarray data. Mach. Learn. 52 (2003), 91–118.
-
(2003)
Mach. Learn.
, vol.52
, pp. 91-118
-
-
Monti, S.1
Tamayo, P.2
Mesirov, J.3
Golub, T.4
-
35
-
-
66149122278
-
Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p
-
Moxley, J.F., Jewett, M.C., Antoniewicz, M.R., Villas-Boas, S.G., Alper, H., Wheeler, R.T., Tong, L., Hinnebusch, A.G., Ideker, T., Nielsen, J., Stephanopoulos, G., Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p. Proc. Natl. Acad. Sci. USA 106 (2009), 6477–6482.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 6477-6482
-
-
Moxley, J.F.1
Jewett, M.C.2
Antoniewicz, M.R.3
Villas-Boas, S.G.4
Alper, H.5
Wheeler, R.T.6
Tong, L.7
Hinnebusch, A.G.8
Ideker, T.9
Nielsen, J.10
Stephanopoulos, G.11
-
36
-
-
84870866192
-
A prototrophic deletion mutant collection for yeast metabolomics and systems biology
-
Mülleder, M., Capuano, F., Pir, P., Christen, S., Sauer, U., Oliver, S.G., Ralser, M., A prototrophic deletion mutant collection for yeast metabolomics and systems biology. Nat. Biotechnol. 30 (2012), 1176–1178.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 1176-1178
-
-
Mülleder, M.1
Capuano, F.2
Pir, P.3
Christen, S.4
Sauer, U.5
Oliver, S.G.6
Ralser, M.7
-
37
-
-
84990959404
-
A high-throughput method for the quantitative determination of free amino acids in Saccharomyces cerevisiae by hydrophilic interaction chromatography tandem mass spectrometry
-
B. Andrews C. Boone T.N. Davis S. Fields Cold Spring Harbor Laboratory Press
-
Mülleder, M., Bluemlein, K., Ralser, M., A high-throughput method for the quantitative determination of free amino acids in Saccharomyces cerevisiae by hydrophilic interaction chromatography tandem mass spectrometry. Andrews, B., Boone, C., Davis, T.N., Fields, S., (eds.) Budding Yeast: A Laboratory Manual, 2016, Cold Spring Harbor Laboratory Press, 608–613.
-
(2016)
Budding Yeast: A Laboratory Manual
, pp. 608-613
-
-
Mülleder, M.1
Bluemlein, K.2
Ralser, M.3
-
38
-
-
33748513704
-
Finding function: evaluation methods for functional genomic data
-
Myers, C.L., Barrett, D.R., Hibbs, M.A., Huttenhower, C., Troyanskaya, O.G., Finding function: evaluation methods for functional genomic data. BMC Genomics, 7, 2006, 187.
-
(2006)
BMC Genomics
, vol.7
, pp. 187
-
-
Myers, C.L.1
Barrett, D.R.2
Hibbs, M.A.3
Huttenhower, C.4
Troyanskaya, O.G.5
-
39
-
-
0034973590
-
Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast
-
Natarajan, K., Meyer, M.R., Jackson, B.M., Slade, D., Roberts, C., Hinnebusch, A.G., Marton, M.J., Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast. Mol. Cell. Biol. 21 (2001), 4347–4368.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 4347-4368
-
-
Natarajan, K.1
Meyer, M.R.2
Jackson, B.M.3
Slade, D.4
Roberts, C.5
Hinnebusch, A.G.6
Marton, M.J.7
-
40
-
-
67651235863
-
A genome-wide screen for regulators of TORC1 in response to amino acid starvation reveals a conserved Npr2/3 complex
-
Neklesa, T.K., Davis, R.W., A genome-wide screen for regulators of TORC1 in response to amino acid starvation reveals a conserved Npr2/3 complex. PLoS Genet., 5, 2009, e1000515.
-
(2009)
PLoS Genet.
, vol.5
, pp. e1000515
-
-
Neklesa, T.K.1
Davis, R.W.2
-
41
-
-
0031015551
-
Flux distributions in anaerobic, glucose-limited continuous cultures of Saccharomyces cerevisiae
-
Nissen, T.L., Schulze, U., Nielsen, J., Villadsen, J., Flux distributions in anaerobic, glucose-limited continuous cultures of Saccharomyces cerevisiae. Microbiology 143 (1997), 203–218.
-
(1997)
Microbiology
, vol.143
, pp. 203-218
-
-
Nissen, T.L.1
Schulze, U.2
Nielsen, J.3
Villadsen, J.4
-
42
-
-
84884889883
-
SEACing the GAP that nEGOCiates TORC1 activation: evolutionary conservation of Rag GTPase regulation
-
Panchaud, N., Péli-Gulli, M.-P., De Virgilio, C., SEACing the GAP that nEGOCiates TORC1 activation: evolutionary conservation of Rag GTPase regulation. Cell Cycle 12 (2013), 2948–2952.
-
(2013)
Cell Cycle
, vol.12
, pp. 2948-2952
-
-
Panchaud, N.1
Péli-Gulli, M.-P.2
De Virgilio, C.3
-
43
-
-
84966671557
-
Metabolite concentrations, fluxes and free energies imply efficient enzyme usage
-
Park, J.O., Rubin, S.A., Xu, Y.-F., Amador-Noguez, D., Fan, J., Shlomi, T., Rabinowitz, J.D., Metabolite concentrations, fluxes and free energies imply efficient enzyme usage. Nat. Chem. Biol. 12 (2016), 482–489.
-
(2016)
Nat. Chem. Biol.
, vol.12
, pp. 482-489
-
-
Park, J.O.1
Rubin, S.A.2
Xu, Y.-F.3
Amador-Noguez, D.4
Fan, J.5
Shlomi, T.6
Rabinowitz, J.D.7
-
44
-
-
0347473810
-
Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways
-
Parsons, A.B., Brost, R.L., Ding, H., Li, Z., Zhang, C., Sheikh, B., Brown, G.W., Kane, P.M., Hughes, T.R., Boone, C., Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways. Nat. Biotechnol. 22 (2004), 62–69.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 62-69
-
-
Parsons, A.B.1
Brost, R.L.2
Ding, H.3
Li, Z.4
Zhang, C.5
Sheikh, B.6
Brown, G.W.7
Kane, P.M.8
Hughes, T.R.9
Boone, C.10
-
45
-
-
25444459083
-
A genomic screen for yeast vacuolar membrane ATPase mutants
-
Sambade, M., Alba, M., Smardon, A.M., West, R.W., Kane, P.M., A genomic screen for yeast vacuolar membrane ATPase mutants. Genetics 170 (2005), 1539–1551.
-
(2005)
Genetics
, vol.170
, pp. 1539-1551
-
-
Sambade, M.1
Alba, M.2
Smardon, A.M.3
West, R.W.4
Kane, P.M.5
-
46
-
-
84880535847
-
Methionine inhibits autophagy and promotes growth by inducing the SAM-responsive methylation of PP2A
-
Sutter, B.M., Wu, X., Laxman, S., Tu, B.P., Methionine inhibits autophagy and promotes growth by inducing the SAM-responsive methylation of PP2A. Cell 154 (2013), 403–415.
-
(2013)
Cell
, vol.154
, pp. 403-415
-
-
Sutter, B.M.1
Wu, X.2
Laxman, S.3
Tu, B.P.4
-
47
-
-
0035503594
-
The pre-autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formation
-
Suzuki, K., Kirisako, T., Kamada, Y., Mizushima, N., Noda, T., Ohsumi, Y., The pre-autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formation. EMBO J. 20 (2001), 5971–5981.
-
(2001)
EMBO J.
, vol.20
, pp. 5971-5981
-
-
Suzuki, K.1
Kirisako, T.2
Kamada, Y.3
Mizushima, N.4
Noda, T.5
Ohsumi, Y.6
-
48
-
-
84941051170
-
STRING v10: protein-protein interaction networks, integrated over the tree of life
-
Szklarczyk, D., Franceschini, A., Wyder, S., Forslund, K., Heller, D., Huerta-Cepas, J., Simonovic, M., Roth, A., Santos, A., Tsafou, K.P., et al. STRING v10: protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Res. 43 (2015), D447–D452.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D447-D452
-
-
Szklarczyk, D.1
Franceschini, A.2
Wyder, S.3
Forslund, K.4
Heller, D.5
Huerta-Cepas, J.6
Simonovic, M.7
Roth, A.8
Santos, A.9
Tsafou, K.P.10
-
49
-
-
84891806965
-
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
-
Teixeira, M.C., Monteiro, P.T., Guerreiro, J.F., Gonçalves, J.P., Mira, N.P., dos Santos, S.C., Cabrito, T.R., Palma, M., Costa, C., Francisco, A.P., et al. The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. Nucleic Acids Res. 42 (2014), D161–D166.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D161-D166
-
-
Teixeira, M.C.1
Monteiro, P.T.2
Guerreiro, J.F.3
Gonçalves, J.P.4
Mira, N.P.5
dos Santos, S.C.6
Cabrito, T.R.7
Palma, M.8
Costa, C.9
Francisco, A.P.10
-
50
-
-
84888206404
-
Genome-wide consequences of deleting any single gene
-
Teng, X., Dayhoff-Brannigan, M., Cheng, W.-C., Gilbert, C.E., Sing, C.N., Diny, N.L., Wheelan, S.J., Dunham, M.J., Boeke, J.D., Pineda, F.J., Hardwick, J.M., Genome-wide consequences of deleting any single gene. Mol. Cell 52 (2013), 485–494.
-
(2013)
Mol. Cell
, vol.52
, pp. 485-494
-
-
Teng, X.1
Dayhoff-Brannigan, M.2
Cheng, W.-C.3
Gilbert, C.E.4
Sing, C.N.5
Diny, N.L.6
Wheelan, S.J.7
Dunham, M.J.8
Boeke, J.D.9
Pineda, F.J.10
Hardwick, J.M.11
-
51
-
-
84912068759
-
Rab1A is an mTORC1 activator and a colorectal oncogene
-
Thomas, J.D., Zhang, Y.-J., Wei, Y.-H., Cho, J.-H., Morris, L.E., Wang, H.-Y., Zheng, X.F.S., Rab1A is an mTORC1 activator and a colorectal oncogene. Cancer Cell 26 (2014), 754–769.
-
(2014)
Cancer Cell
, vol.26
, pp. 754-769
-
-
Thomas, J.D.1
Zhang, Y.-J.2
Wei, Y.-H.3
Cho, J.-H.4
Morris, L.E.5
Wang, H.-Y.6
Zheng, X.F.S.7
-
52
-
-
0034724520
-
Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation
-
Travers, K.J., Patil, C.K., Wodicka, L., Lockhart, D.J., Weissman, J.S., Walter, P., Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation. Cell 101 (2000), 249–258.
-
(2000)
Cell
, vol.101
, pp. 249-258
-
-
Travers, K.J.1
Patil, C.K.2
Wodicka, L.3
Lockhart, D.J.4
Weissman, J.S.5
Walter, P.6
-
53
-
-
34249813098
-
Sch9 is a major target of TORC1 in Saccharomyces cerevisiae
-
Urban, J., Soulard, A., Huber, A., Lippman, S., Mukhopadhyay, D., Deloche, O., Wanke, V., Anrather, D., Ammerer, G., Riezman, H., et al. Sch9 is a major target of TORC1 in Saccharomyces cerevisiae. Mol. Cell 26 (2007), 663–674.
-
(2007)
Mol. Cell
, vol.26
, pp. 663-674
-
-
Urban, J.1
Soulard, A.2
Huber, A.3
Lippman, S.4
Mukhopadhyay, D.5
Deloche, O.6
Wanke, V.7
Anrather, D.8
Ammerer, G.9
Riezman, H.10
-
54
-
-
84908654385
-
Broad metabolic sensitivity profiling of a prototrophic yeast deletion collection
-
VanderSluis, B., Hess, D.C., Pesyna, C., Krumholz, E.W., Syed, T., Szappanos, B., Nislow, C., Papp, B., Troyanskaya, O.G., Myers, C.L., Caudy, A.A., Broad metabolic sensitivity profiling of a prototrophic yeast deletion collection. Genome Biol., 15, 2014, R64.
-
(2014)
Genome Biol.
, vol.15
, pp. R64
-
-
VanderSluis, B.1
Hess, D.C.2
Pesyna, C.3
Krumholz, E.W.4
Syed, T.5
Szappanos, B.6
Nislow, C.7
Papp, B.8
Troyanskaya, O.G.9
Myers, C.L.10
Caudy, A.A.11
-
55
-
-
84877309040
-
Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods
-
Väremo, L., Nielsen, J., Nookaew, I., Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods. Nucleic Acids Res. 41 (2013), 4378–4391.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 4378-4391
-
-
Väremo, L.1
Nielsen, J.2
Nookaew, I.3
-
56
-
-
84875142412
-
Protein complex-based analysis framework for high-throughput data sets
-
Vinayagam, A., Hu, Y., Kulkarni, M., Roesel, C., Sopko, R., Mohr, S.E., Perrimon, N., Protein complex-based analysis framework for high-throughput data sets. Sci. Signal., 6, 2013, rs5.
-
(2013)
Sci. Signal.
, vol.6
, pp. rs5
-
-
Vinayagam, A.1
Hu, Y.2
Kulkarni, M.3
Roesel, C.4
Sopko, R.5
Mohr, S.E.6
Perrimon, N.7
-
57
-
-
0033529707
-
Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
-
Winzeler, E.A., Shoemaker, D.D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J.D., Bussey, H., et al. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285 (1999), 901–906.
-
(1999)
Science
, vol.285
, pp. 901-906
-
-
Winzeler, E.A.1
Shoemaker, D.D.2
Astromoff, A.3
Liang, H.4
Anderson, K.5
Andre, B.6
Bangham, R.7
Benito, R.8
Boeke, J.D.9
Bussey, H.10
-
58
-
-
18844446425
-
Insights into TOR function and rapamycin response: chemical genomic profiling by using a high-density cell array method
-
Xie, M.W., Jin, F., Hwang, H., Hwang, S., Anand, V., Duncan, M.C., Huang, J., Insights into TOR function and rapamycin response: chemical genomic profiling by using a high-density cell array method. Proc. Natl. Acad. Sci. USA 102 (2005), 7215–7220.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 7215-7220
-
-
Xie, M.W.1
Jin, F.2
Hwang, H.3
Hwang, S.4
Anand, V.5
Duncan, M.C.6
Huang, J.7
-
59
-
-
0029024442
-
Novel PI(4)P 5-kinase homologue, Fab1p, essential for normal vacuole function and morphology in yeast
-
Yamamoto, A., DeWald, D.B., Boronenkov, I.V., Anderson, R.A., Emr, S.D., Koshland, D., Novel PI(4)P 5-kinase homologue, Fab1p, essential for normal vacuole function and morphology in yeast. Mol. Biol. Cell 6 (1995), 525–539.
-
(1995)
Mol. Biol. Cell
, vol.6
, pp. 525-539
-
-
Yamamoto, A.1
DeWald, D.B.2
Boronenkov, I.V.3
Anderson, R.A.4
Emr, S.D.5
Koshland, D.6
-
60
-
-
80855128291
-
Mapping the interaction of Snf1 with TORC1 in Saccharomyces cerevisiae
-
Zhang, J., Vaga, S., Chumnanpuen, P., Kumar, R., Vemuri, G.N., Aebersold, R., Nielsen, J., Mapping the interaction of Snf1 with TORC1 in Saccharomyces cerevisiae. Mol. Syst. Biol., 7, 2011, 545.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 545
-
-
Zhang, J.1
Vaga, S.2
Chumnanpuen, P.3
Kumar, R.4
Vemuri, G.N.5
Aebersold, R.6
Nielsen, J.7
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