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Volumn 7, Issue , 2006, Pages

Finding function: Evaluation methods for functional genomic data

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; BIOINFORMATICS; FUNCTIONAL GENOMICS; FUNGAL GENETICS; GOLD STANDARD; INFORMATION PROCESSING; INTERMETHOD COMPARISON; INTERNET; NONHUMAN; PREDICTION; QUALITATIVE ANALYSIS; QUALITY CONTROL; QUANTITATIVE ANALYSIS; SACCHAROMYCES CEREVISIAE;

EID: 33748513704     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-7-187     Document Type: Article
Times cited : (173)

References (38)
  • 2
    • 6944251719 scopus 로고    scopus 로고
    • Predicting gene function in Saccharomyces cerevisiae
    • Clare A, King RD: Predicting gene function in Saccharomyces cerevisiae. Bioinformatics 2003, 19(Suppl 2):1142-1149.
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 2 , pp. 1142-1149
    • Clare, A.1    King, R.D.2
  • 4
    • 0036100116 scopus 로고    scopus 로고
    • Learning gene functional classifications from multiple data types
    • Pavlidis P, Weston J, Cai J, Noble WS: Learning gene functional classifications from multiple data types. J Comput Biol 2002, 9(2):401-411.
    • (2002) J Comput Biol , vol.9 , Issue.2 , pp. 401-411
    • Pavlidis, P.1    Weston, J.2    Cai, J.3    Noble, W.S.4
  • 5
    • 24744435534 scopus 로고    scopus 로고
    • Kernel methods for predicting protein-protein interactions
    • Ben-Hur A, Noble WS: Kernel methods for predicting protein-protein interactions. Bioinformatics 2005, 21 (Suppl 1):i38-i46.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 1
    • Ben-Hur, A.1    Noble, W.S.2
  • 7
    • 9444239213 scopus 로고    scopus 로고
    • A probabilistic functional network of yeast genes
    • Lee I, Date SV, Adai AT, Marcotte EM: A probabilistic functional network of yeast genes. Science 2004, 306(5701):1555-1558.
    • (2004) Science , vol.306 , Issue.5701 , pp. 1555-1558
    • Lee, I.1    Date, S.V.2    Adai, A.T.3    Marcotte, E.M.4
  • 8
    • 13244265581 scopus 로고    scopus 로고
    • Information assessment on predicting protein-protein interactions
    • Lin N, Wu B, Jansen R, Gerstein M, Zhao H: Information assessment on predicting protein-protein interactions. BMC Bioinformatics 2004, 5(1):154.
    • (2004) BMC Bioinformatics , vol.5 , Issue.1 , pp. 154
    • Lin, N.1    Wu, B.2    Jansen, R.3    Gerstein, M.4    Zhao, H.5
  • 9
    • 0038492417 scopus 로고    scopus 로고
    • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae)
    • Troyanskaya OG, Dolinski K, Owen AB, Altman RB, Botstein D: A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae). Proc Natl Acad Sci USA 2003, 100(14):8348-8353.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.14 , pp. 8348-8353
    • Troyanskaya, O.G.1    Dolinski, K.2    Owen, A.B.3    Altman, R.B.4    Botstein, D.5
  • 10
    • 22144459754 scopus 로고    scopus 로고
    • Discovering functional relationships: Biochemistry versus genetics
    • Wong SL, Zhang LV, Roth FP: Discovering functional relationships: biochemistry versus genetics. Trends Genet 2005, 21(8):424-427.
    • (2005) Trends Genet , vol.21 , Issue.8 , pp. 424-427
    • Wong, S.L.1    Zhang, L.V.2    Roth, F.P.3
  • 11
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa M, Goto S: KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000, 28(1):27-30.
    • (2000) Nucleic Acids Res , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 12
    • 19544389868 scopus 로고    scopus 로고
    • Protein network inference from multiple genomic data: A supervised approach
    • Yamanishi Y, Vert JP, Kanehisa M: Protein network inference from multiple genomic data: a supervised approach. Bioinformatics 2004, 20(Suppl 1):1363-1370.
    • (2004) Bioinformatics , vol.20 , Issue.SUPPL. 1 , pp. 1363-1370
    • Yamanishi, Y.1    Vert, J.P.2    Kanehisa, M.3
  • 13
    • 84872265485 scopus 로고    scopus 로고
    • GRIFn Home Page [http://function.princeton.edu/GRIFn]
  • 15
    • 0037432528 scopus 로고    scopus 로고
    • How reliable are experimental protein-protein interaction data?
    • Sprinzak E, Sattath S, Margalit H: How reliable are experimental protein-protein interaction data? J Mol Biol 2003, 327(5):919-923.
    • (2003) J Mol Biol , vol.327 , Issue.5 , pp. 919-923
    • Sprinzak, E.1    Sattath, S.2    Margalit, H.3
  • 17
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of large-scale data sets of protein-protein interactions
    • von Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, Bork P: Comparative assessment of large-scale data sets of protein-protein interactions. Nature 2002, 417(6887):399-403.
    • (2002) Nature , vol.417 , Issue.6887 , pp. 399-403
    • von Mering, C.1    Krause, R.2    Snel, B.3    Cornell, M.4    Oliver, S.G.5    Fields, S.6    Bork, P.7
  • 18
    • 1342330530 scopus 로고    scopus 로고
    • A graph-theoretic modeling on GO space for biological interpretation of gene clusters
    • Lee SG, Hur JU, Kim YS: A graph-theoretic modeling on GO space for biological interpretation of gene clusters. Bioinformatics 2004, 20(3):381-388.
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 381-388
    • Lee, S.G.1    Hur, J.U.2    Kim, Y.S.3
  • 23
    • 4644306020 scopus 로고    scopus 로고
    • Analyzing protein function on a genomic scale: The importance of gold-standard positives and negatives for network prediction
    • Jansen R, Gerstein M: Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction. Curr Opin Microbiol 2004, 7(5):535-545.
    • (2004) Curr Opin Microbiol , vol.7 , Issue.5 , pp. 535-545
    • Jansen, R.1    Gerstein, M.2
  • 24
    • 24044434446 scopus 로고    scopus 로고
    • Filtering high-throughput protein-protein interaction data using a combination of genomic features
    • Patil A, Nakamura H: Filtering high-throughput protein-protein interaction data using a combination of genomic features. BMC Bioinformatics 2005, 6(1):100.
    • (2005) BMC Bioinformatics , vol.6 , Issue.1 , pp. 100
    • Patil, A.1    Nakamura, H.2
  • 26
    • 0036580169 scopus 로고    scopus 로고
    • Protein interactions: Two methods for assessment of the reliability of high throughput observations
    • Deane CM, Salwinski L, Xenarios I, Eisenberg D: Protein interactions: two methods for assessment of the reliability of high throughput observations. Mol Cell Proteomics 2002, 1(5):349-356.
    • (2002) Mol Cell Proteomics , vol.1 , Issue.5 , pp. 349-356
    • Deane, C.M.1    Salwinski, L.2    Xenarios, I.3    Eisenberg, D.4
  • 27
    • 15944418607 scopus 로고    scopus 로고
    • Random forest similarity for protein-protein interaction prediction from multiple sources
    • Qi Y, Klein-Seetharaman J, Bar-Joseph Z: Random forest similarity for protein-protein interaction prediction from multiple sources. Pac Symp Biocomput 2005:531-542.
    • (2005) Pac Symp Biocomput , pp. 531-542
    • Qi, Y.1    Klein-Seetharaman, J.2    Bar-Joseph, Z.3
  • 30
    • 0037264524 scopus 로고    scopus 로고
    • The GRID: The General Repository for Interaction Datasets
    • Breitkreutz BJ, Stark C, Tyers M: The GRID: the General Repository for Interaction Datasets. Genome Biol 2003, 4(3):R23.
    • (2003) Genome Biol , vol.4 , Issue.3
    • Breitkreutz, B.J.1    Stark, C.2    Tyers, M.3
  • 32
    • 0037480738 scopus 로고    scopus 로고
    • Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation
    • Lord PW, Stevens RD, Brass A, Goble CA: Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics 2003, 19(10):1275-1283.
    • (2003) Bioinformatics , vol.19 , Issue.10 , pp. 1275-1283
    • Lord, P.W.1    Stevens, R.D.2    Brass, A.3    Goble, C.A.4
  • 33
    • 33947328242 scopus 로고    scopus 로고
    • Choosing negative examples for the prediction of protein-protein interactions
    • Ben-Hur A, Noble WS: Choosing negative examples for the prediction of protein-protein interactions. BMC Bioinformatics 2005, 7(Suppl61):S2.
    • (2005) BMC Bioinformatics , vol.7 , Issue.SUPPL. 61
    • Ben-Hur, A.1    Noble, W.S.2
  • 37
    • 0035162698 scopus 로고    scopus 로고
    • Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec 1 p
    • Gasch AP, Huang M, Metzner S, Botstein D, Elledge SJ, Brown PO: Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec 1 p. Mol Biol Cell 2001, 12(10):2987-3003.
    • (2001) Mol Biol Cell , vol.12 , Issue.10 , pp. 2987-3003
    • Gasch, A.P.1    Huang, M.2    Metzner, S.3    Botstein, D.4    Elledge, S.J.5    Brown, P.O.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.