-
1
-
-
0036898577
-
Microarray data normalization and transformation
-
10.1038/ng1032, 12454644
-
Quackenbush J. Microarray data normalization and transformation. Nat Genet 2002, 32:496-501. 10.1038/ng1032, 12454644.
-
(2002)
Nat Genet
, vol.32
, pp. 496-501
-
-
Quackenbush, J.1
-
2
-
-
16344379368
-
Normalization of two-channel microarray experiments: a semiparametric approach
-
10.1093/bioinformatics/bti105, 15513988
-
Eckel JE, Gennings C, Therneau TM, Burgoon LD, Boverhof DR, Zacharewski TR. Normalization of two-channel microarray experiments: a semiparametric approach. Bioinformatics 2005, 21(7):1078-1083. 10.1093/bioinformatics/bti105, 15513988.
-
(2005)
Bioinformatics
, vol.21
, Issue.7
, pp. 1078-1083
-
-
Eckel, J.E.1
Gennings, C.2
Therneau, T.M.3
Burgoon, L.D.4
Boverhof, D.R.5
Zacharewski, T.R.6
-
3
-
-
8844271685
-
Faster cyclic loess: normalizing RNA arrays via linear models
-
10.1093/bioinformatics/bth327, 15166021
-
Ballman KV, Grill DE, Oberg AL, Therneau TM. Faster cyclic loess: normalizing RNA arrays via linear models. Bioinformatics 2004, 20(16):2778-2786. 10.1093/bioinformatics/bth327, 15166021.
-
(2004)
Bioinformatics
, vol.20
, Issue.16
, pp. 2778-2786
-
-
Ballman, K.V.1
Grill, D.E.2
Oberg, A.L.3
Therneau, T.M.4
-
4
-
-
65549139459
-
Data-driven normalization strategies for high-throughput quantitative RT-PCR
-
Mar JC, Kimura Y, Schroder K, Irvine KM, Hayashizaki Y, Suzuki H, Hume D, Quackenbush J. Data-driven normalization strategies for high-throughput quantitative RT-PCR. BMC Bioinformatics 2009, 10.
-
(2009)
BMC Bioinformatics
, vol.10
-
-
Mar, J.C.1
Kimura, Y.2
Schroder, K.3
Irvine, K.M.4
Hayashizaki, Y.5
Suzuki, H.6
Hume, D.7
Quackenbush, J.8
-
5
-
-
33847768117
-
Towards the plant metabolome and beyond
-
10.1038/nrm2098, 17213843
-
Last RL, Jones AD, Shachar-Hill Y. Towards the plant metabolome and beyond. Nat Rev Mol Cell Biol 2007, 8(2):167-174. 10.1038/nrm2098, 17213843.
-
(2007)
Nat Rev Mol Cell Biol
, vol.8
, Issue.2
, pp. 167-174
-
-
Last, R.L.1
Jones, A.D.2
Shachar-Hill, Y.3
-
6
-
-
3843130613
-
Application of a high-throughput HPLC-MS/MS assay to Arabidopsis mutant screening; evidence that threonine aldolase plays a role in seed nutritional quality
-
10.1111/j.1365-313X.2004.02140.x, 15255874
-
Jander G, Norris SR, Joshi V, Fraga M, Rugg A, Yu S, Li L, Last RL. Application of a high-throughput HPLC-MS/MS assay to Arabidopsis mutant screening; evidence that threonine aldolase plays a role in seed nutritional quality. Plant J 2004, 39(3):465-475. 10.1111/j.1365-313X.2004.02140.x, 15255874.
-
(2004)
Plant J
, vol.39
, Issue.3
, pp. 465-475
-
-
Jander, G.1
Norris, S.R.2
Joshi, V.3
Fraga, M.4
Rugg, A.5
Yu, S.6
Li, L.7
Last, R.L.8
-
7
-
-
0033757963
-
Metabolite profiling for plant functional genomics
-
Fiehn O, Kopka J, Dörmann P, Altmann T, Trethewey RN, Willmitzer L. Metabolite profiling for plant functional genomics. Nat Biotech 2000, 18(11):1157-1161.
-
(2000)
Nat Biotech
, vol.18
, Issue.11
, pp. 1157-1161
-
-
Fiehn, O.1
Kopka, J.2
Dörmann, P.3
Altmann, T.4
Trethewey, R.N.5
Willmitzer, L.6
-
8
-
-
9244226546
-
Design and analysis of experiments with high throughput biological assay data
-
Rocke DM. Design and analysis of experiments with high throughput biological assay data. Sem Cell Dev Biol 2004, 15(6):703-713.
-
(2004)
Sem Cell Dev Biol
, vol.15
, Issue.6
, pp. 703-713
-
-
Rocke, D.M.1
-
9
-
-
31444456482
-
Inferential literacy for experimental high-throughput biology
-
10.1016/j.tig.2005.12.001, 16377025
-
Miron M, Nadon R. Inferential literacy for experimental high-throughput biology. Trends Genet 2006, 22(2):84-89. 10.1016/j.tig.2005.12.001, 16377025.
-
(2006)
Trends Genet
, vol.22
, Issue.2
, pp. 84-89
-
-
Miron, M.1
Nadon, R.2
-
10
-
-
48549088711
-
New Connections across Pathways and Cellular Processes: Industrialized Mutant Screening Reveals Novel Associations between Diverse Phenotypes in Arabidopsis
-
10.1104/pp.107.115220, 2287328, 18263779
-
Lu Y, Savage LJ, Ajjawi I, Imre KM, Yoder DW, Benning C, DellaPenna D, Ohlrogge JB, Osteryoung KW, Weber AP, et al. New Connections across Pathways and Cellular Processes: Industrialized Mutant Screening Reveals Novel Associations between Diverse Phenotypes in Arabidopsis. Plant Physiol 2008, 146(4):1482-1500. 10.1104/pp.107.115220, 2287328, 18263779.
-
(2008)
Plant Physiol
, vol.146
, Issue.4
, pp. 1482-1500
-
-
Lu, Y.1
Savage, L.J.2
Ajjawi, I.3
Imre, K.M.4
Yoder, D.W.5
Benning, C.6
DellaPenna, D.7
Ohlrogge, J.B.8
Osteryoung, K.W.9
Weber, A.P.10
-
11
-
-
75949108783
-
Large-Scale Reverse Genetics in Arabidopsis: Case Studies from the Chloroplast 2010 Project
-
10.1104/pp.109.148494, 2815874, 19906890
-
Ajjawi I, Lu Y, Savage LJ, Bell SM, Last RL. Large-Scale Reverse Genetics in Arabidopsis: Case Studies from the Chloroplast 2010 Project. Plant Physiol 2010, 152(2):529-540. 10.1104/pp.109.148494, 2815874, 19906890.
-
(2010)
Plant Physiol
, vol.152
, Issue.2
, pp. 529-540
-
-
Ajjawi, I.1
Lu, Y.2
Savage, L.J.3
Bell, S.M.4
Last, R.L.5
-
12
-
-
79953719673
-
Chloroplast 2010: A Database for Large-Scale Phenotypic Screening of Arabidopsis Mutants
-
10.1104/pp.110.170118, 3091111, 21224340
-
Lu Y, Savage LJ, Larson MD, Wilkerson CG, Last RL. Chloroplast 2010: A Database for Large-Scale Phenotypic Screening of Arabidopsis Mutants. Plant Physiol 2011, 155(4):1589-1600. 10.1104/pp.110.170118, 3091111, 21224340.
-
(2011)
Plant Physiol
, vol.155
, Issue.4
, pp. 1589-1600
-
-
Lu, Y.1
Savage, L.J.2
Larson, M.D.3
Wilkerson, C.G.4
Last, R.L.5
-
13
-
-
80054754805
-
Chloroplast Phenomics: Systematic Phenotypic Screening of Chloroplast Protein Mutants in Arabidopsis
-
NY: Humana Press, Jarvis RP
-
Lu Y, Savage LJ, Last RL. Chloroplast Phenomics: Systematic Phenotypic Screening of Chloroplast Protein Mutants in Arabidopsis. Chloroplast Research in Arabidopsis: Methods and Protocols, Volume II 2011, 775:161-185. NY: Humana Press, Jarvis RP.
-
(2011)
Chloroplast Research in Arabidopsis: Methods and Protocols, Volume II
, vol.775
, pp. 161-185
-
-
Lu, Y.1
Savage, L.J.2
Last, R.L.3
-
15
-
-
0035112091
-
Arabidopsis gene knockout: phenotypes wanted
-
10.1016/S1369-5266(00)00145-X, 11228432
-
Bouché N, Bouchez D. Arabidopsis gene knockout: phenotypes wanted. Curr Opin Plant Biol 2001, 4(2):111-117. 10.1016/S1369-5266(00)00145-X, 11228432.
-
(2001)
Curr Opin Plant Biol
, vol.4
, Issue.2
, pp. 111-117
-
-
Bouché, N.1
Bouchez, D.2
-
16
-
-
10744226976
-
Engineering Vitamin E Content: From Arabidopsis Mutant to Soy Oil
-
10.1105/tpc.015875, 282849, 14630966
-
Van Eenennaam AL, Lincoln K, Durrett TP, Valentin HE, Shewmaker CK, Thorne GM, Jiang J, Baszis SR, Levering CK, Aasen ED, et al. Engineering Vitamin E Content: From Arabidopsis Mutant to Soy Oil. Plant Cell 2003, 15(12):3007-3019. 10.1105/tpc.015875, 282849, 14630966.
-
(2003)
Plant Cell
, vol.15
, Issue.12
, pp. 3007-3019
-
-
Van Eenennaam, A.L.1
Lincoln, K.2
Durrett, T.P.3
Valentin, H.E.4
Shewmaker, C.K.5
Thorne, G.M.6
Jiang, J.7
Baszis, S.R.8
Levering, C.K.9
Aasen, E.D.10
-
17
-
-
1342294092
-
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
-
10.1093/nar/30.4.e15, 100354, 11842121
-
Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucl Acids Res 2002, 30(4):e15. 10.1093/nar/30.4.e15, 100354, 11842121.
-
(2002)
Nucl Acids Res
, vol.30
, Issue.4
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
18
-
-
70349280929
-
An experimental comparison of performance measures for classification
-
Ferri C, Hernandez-Orallo J, Modroiu R. An experimental comparison of performance measures for classification. Pattern Recog Lett 2009, 27-38.
-
(2009)
Pattern Recog Lett
, pp. 27-38
-
-
Ferri, C.1
Hernandez-Orallo, J.2
Modroiu, R.3
-
19
-
-
0042768158
-
Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana
-
10.1126/science.1086391, 12893945
-
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, et al. Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana. Science 2003, 301(5633):653-657. 10.1126/science.1086391, 12893945.
-
(2003)
Science
, vol.301
, Issue.5633
, pp. 653-657
-
-
Alonso, J.M.1
Stepanova, A.N.2
Leisse, T.J.3
Kim, C.J.4
Chen, H.5
Shinn, P.6
Stevenson, D.K.7
Zimmerman, J.8
Barajas, P.9
Cheuk, R.10
-
20
-
-
0038460047
-
AraCyc: A Biochemical Pathway Database for Arabidopsis
-
10.1104/pp.102.017236, 166988, 12805578
-
Mueller LA, Zhang P, Rhee SY. AraCyc: A Biochemical Pathway Database for Arabidopsis. Plant Physiol 2003, 132(2):453-460. 10.1104/pp.102.017236, 166988, 12805578.
-
(2003)
Plant Physiol
, vol.132
, Issue.2
, pp. 453-460
-
-
Mueller, L.A.1
Zhang, P.2
Rhee, S.Y.3
-
21
-
-
3042672020
-
Functional Annotation of the Arabidopsis Genome Using Controlled Vocabularies
-
10.1104/pp.104.040071, 514112, 15173566
-
Berardini TZ, Mundodi S, Reiser L, Huala E, Garcia-Hernandez M, Zhang P, Mueller LA, Yoon J, Doyle A, Lander G, et al. Functional Annotation of the Arabidopsis Genome Using Controlled Vocabularies. Plant Physiol 2004, 135(2):745-755. 10.1104/pp.104.040071, 514112, 15173566.
-
(2004)
Plant Physiol
, vol.135
, Issue.2
, pp. 745-755
-
-
Berardini, T.Z.1
Mundodi, S.2
Reiser, L.3
Huala, E.4
Garcia-Hernandez, M.5
Zhang, P.6
Mueller, L.A.7
Yoon, J.8
Doyle, A.9
Lander, G.10
-
22
-
-
0037249498
-
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community
-
10.1093/nar/gkg076, 165523, 12519987
-
Rhee SY, Beavis W, Berardini TZ, Chen G, Dixon D, Doyle A, Garcia-Hernandez M, Huala E, Lander G, Montoya M, et al. The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucl Acids Res 2003, 31(1):224-228. 10.1093/nar/gkg076, 165523, 12519987.
-
(2003)
Nucl Acids Res
, vol.31
, Issue.1
, pp. 224-228
-
-
Rhee, S.Y.1
Beavis, W.2
Berardini, T.Z.3
Chen, G.4
Dixon, D.5
Doyle, A.6
Garcia-Hernandez, M.7
Huala, E.8
Lander, G.9
Montoya, M.10
-
23
-
-
79961135005
-
R: A Language and Environment for Statistical Computing
-
R Foundation for Statistical Computing, R Development Core Team
-
R Development Core Team R: A Language and Environment for Statistical Computing. 2011, R Foundation for Statistical Computing, R Development Core Team., http://www.R-project.org
-
(2011)
-
-
|