-
1
-
-
4444351490
-
Empirical force fields for biological macromolecules: Overview and issues
-
MacKerell, A. D., Jr. Empirical Force Fields for Biological Macromolecules: Overview and Issues. J. Comput. Chem. 2004, 25, 1584-1604.
-
(2004)
J. Comput. Chem
, vol.25
, pp. 1584-1604
-
-
MacKerell, A.D.1
-
2
-
-
0017100947
-
Theoretical studies of enzymic reactions: Dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme
-
Warshel, A.; Levitt, M. Theoretical Studies of Enzymic Reactions: Dielectric, Electrostatic and Steric Stabilization of the Carbonium Ion in the Reaction of Lysozyme. J. Mol. Biol. 1976, 103, 227-249.
-
(1976)
J. Mol. Biol
, vol.103
, pp. 227-249
-
-
Warshel, A.1
Levitt, M.2
-
3
-
-
60349127442
-
QM/MM methods for biomolecular systems
-
Senn, H. M.; Thiel, W. QM/MM Methods for Biomolecular Systems. Angew. Chem., Int. Ed. 2009, 48, 1198-1229.
-
(2009)
Angew. Chem., Int. Ed
, vol.48
, pp. 1198-1229
-
-
Senn, H.M.1
Thiel, W.2
-
4
-
-
33846570818
-
QM/MM: What have we learned, where are we, and where do we go from here?
-
Lin, H.; Truhlar, D. G. QM/MM: What Have We Learned, Where Are We, and Where Do We Go from Here? Theor. Chem. Acc. 2007, 117, 185-199.
-
(2007)
Theor. Chem. Acc
, vol.117
, pp. 185-199
-
-
Lin, H.1
Truhlar, D.G.2
-
5
-
-
36649021120
-
Design of a next generation force field: The X-pol potential
-
Xie, W.; Gao, J. Design of a Next Generation Force Field: The X-Pol Potential. J. Chem. Theory Comput. 2007, 3, 1890-1900.
-
(2007)
J. Chem. Theory Comput
, vol.3
, pp. 1890-1900
-
-
Xie, W.1
Gao, J.2
-
6
-
-
0001349177
-
Constructing ab initio force fields for molecular dynamics simulations
-
Liu, Y.-P.; Kim, K.; Berne, B. J.; Friesner, R. A.; Rick, S. W. Constructing Ab Initio Force Fields for Molecular Dynamics Simulations. J. Chem. Phys. 1998, 108, 4739-4755.
-
(1998)
J. Chem. Phys
, vol.108
, pp. 4739-4755
-
-
Liu, Y.-P.1
Kim, K.2
Berne, B.J.3
Friesner, R.A.4
Rick, S.W.5
-
7
-
-
0036882094
-
Development of a polarizable force field for proteins via ab initio quantum chemistry: First generation model and gas phase tests
-
Kaminski, G. A.; Stern, H. A.; Berne, B. J.; Friesner, R. A.; Cao, Y. X.; Murphy, R. B.; Zhou, R.; Halgren, T. A. Development of a Polarizable Force Field for Proteins via Ab Initio Quantum Chemistry: First Generation Model and Gas Phase Tests. J. Comput. Chem. 2002, 23, 1515-1531.
-
(2002)
J. Comput. Chem
, vol.23
, pp. 1515-1531
-
-
Kaminski, G.A.1
Stern, H.A.2
Berne, B.J.3
Friesner, R.A.4
Cao, Y.X.5
Murphy, R.B.6
Zhou, R.7
Halgren, T.A.8
-
8
-
-
0036890275
-
Consistent treatment of inter- and intramolecular polarization in molecular mechanics calculations
-
Ren, P.; Ponder, J. W. Consistent Treatment of Inter- and Intramolecular Polarization in Molecular Mechanics Calculations. J. Comput. Chem. 2002, 23, 1497-1506.
-
(2002)
J. Comput. Chem
, vol.23
, pp. 1497-1506
-
-
Ren, P.1
Ponder, J.W.2
-
9
-
-
36649029525
-
Development of a polarizable intermolecular potential function (PIPF) for liquid amides and alkanes
-
Xie, W.; Pu, J.; MacKerell, A. D.; Gao, J. Development of a Polarizable Intermolecular Potential Function (PIPF) for Liquid Amides and Alkanes. J. Chem. Theory Comput. 2007, 3, 1878-1889.
-
(2007)
J. Chem. Theory Comput
, vol.3
, pp. 1878-1889
-
-
Xie, W.1
Pu, J.2
MacKerell, A.D.3
Gao, J.4
-
10
-
-
36649026480
-
Polarization effects for hydrogen-bonded complexes of substituted phenols with water and chloride ion
-
Jorgensen, W. L.; Jensen, K. P.; Alexandrova, A. N. Polarization Effects for Hydrogen-Bonded Complexes of Substituted Phenols with Water and Chloride Ion. J. Chem. Theory Comput. 2007, 3, 1987-1992.
-
(2007)
J. Chem. Theory Comput
, vol.3
, pp. 1987-1992
-
-
Jorgensen, W.L.1
Jensen, K.P.2
Alexandrova, A.N.3
-
11
-
-
84884194561
-
Polarizable atomic multipole-based AMOEBA force field for proteins
-
Shi, Y.; Xia, Z.; Zhang, J.; Best, R.; Wu, C.; Ponder, J. W.; Ren, P. Polarizable Atomic Multipole-Based AMOEBA Force Field for Proteins. J. Chem. Theory Comput. 2013, 9, 4046-4063.
-
(2013)
J. Chem. Theory Comput
, vol.9
, pp. 4046-4063
-
-
Shi, Y.1
Xia, Z.2
Zhang, J.3
Best, R.4
Wu, C.5
Ponder, J.W.6
Ren, P.7
-
12
-
-
84883348838
-
Systematic improvement of a classical molecular model of water
-
Wang, L.-P.; Head-Gordon, T.; Ponder, J. W.; Ren, P.; Chodera, J. D.; Eastman, P. K.; Martinez, T. J.; Pande, V. S. Systematic Improvement of a Classical Molecular Model of Water. J. Phys. Chem. B 2013, 117, 9956-9972.
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 9956-9972
-
-
Wang, L.-P.1
Head-Gordon, T.2
Ponder, J.W.3
Ren, P.4
Chodera, J.D.5
Eastman, P.K.6
Martinez, T.J.7
Pande, V.S.8
-
13
-
-
84902079388
-
Building force fields: An automatic, systematic, and reproducible approach
-
Wang, L.-P.; Martinez, T. J.; Pande, V. S. Building Force Fields: An Automatic, Systematic, and Reproducible Approach. J. Phys. Chem. Lett. 2014, 5, 1885-1891.
-
(2014)
J. Phys. Chem. Lett
, vol.5
, pp. 1885-1891
-
-
Wang, L.-P.1
Martinez, T.J.2
Pande, V.S.3
-
14
-
-
36448999850
-
Dynamical fluctuating charge force fields: Application to liquid water
-
Rick, S. W.; Stuart, S. J.; Berne, B. J. Dynamical Fluctuating Charge Force Fields: Application to Liquid Water. J. Chem. Phys. 1994, 101, 6141-6156.
-
(1994)
J. Chem. Phys
, vol.101
, pp. 6141-6156
-
-
Rick, S.W.1
Stuart, S.J.2
Berne, B.J.3
-
15
-
-
0000610417
-
Dynamical fluctuating charge force fields: The aqueous solvation of amides
-
Rick, S. W.; Berne, B. J. Dynamical Fluctuating Charge Force Fields: The Aqueous Solvation of Amides. J. Am. Chem. Soc. 1996, 118, 672-679.
-
(1996)
J. Am. Chem. Soc
, vol.118
, pp. 672-679
-
-
Rick, S.W.1
Berne, B.J.2
-
16
-
-
0035424605
-
Combined fluctuating charge and polarizable dipole models: Application to a five-site water potential function
-
Stern, H. A.; Rittner, F.; Berne, B. J.; Friesner, R. A. Combined Fluctuating Charge and Polarizable Dipole Models: Application to a Five-Site Water Potential Function. J. Chem. Phys. 2001, 115, 2237-2251.
-
(2001)
J. Chem. Phys
, vol.115
, pp. 2237-2251
-
-
Stern, H.A.1
Rittner, F.2
Berne, B.J.3
Friesner, R.A.4
-
17
-
-
0347655649
-
CHARMM fluctuating charge force field for proteins: I parameterization and application to Bulk organic liquid simulations
-
Patel, S.; Brooks, C. L. CHARMM Fluctuating Charge Force Field for Proteins: I Parameterization and Application to Bulk Organic Liquid Simulations. J. Comput. Chem. 2004, 25, 1-16.
-
(2004)
J. Comput. Chem
, vol.25
, pp. 1-16
-
-
Patel, S.1
Brooks, C.L.2
-
18
-
-
4043057278
-
Charmm fluctuating charge force field for proteins: II protein/Solvent properties from molecular dynamics simulations using a nonadditive electrostatic model
-
Patel, S.; MacKerell, A. D., Jr.; Brooks, C. L. Charmm Fluctuating Charge Force Field for Proteins: II Protein/Solvent Properties from Molecular Dynamics Simulations Using a Nonadditive Electrostatic Model. J. Comput. Chem. 2004, 25, 1504-1514.
-
(2004)
J. Comput. Chem
, vol.25
, pp. 1504-1514
-
-
Patel, S.1
MacKerell, A.D.2
Brooks, C.L.3
-
19
-
-
0002464597
-
The additivity of the energies of normal covalent bonds
-
Pauling, L.; Yost, D. M. The Additivity of the Energies of Normal Covalent Bonds. Proc. Natl. Acad. Sci. U.S.A. 1932, 18, 414.
-
(1932)
Proc. Natl. Acad. Sci. U.S.A
, vol.18
, pp. 414
-
-
Pauling, L.1
Yost, D.M.2
-
20
-
-
84855466022
-
Charge equilibration force fields for molecular dynamics simulations of lipids, bilayers, and integral membrane protein systems
-
Lucas, T. R.; Bauer, B. A.; Patel, S. Charge Equilibration Force Fields for Molecular Dynamics Simulations of Lipids, Bilayers, and Integral Membrane Protein Systems. Biochim. Biophys. Acta, Biomembr. 2012, 1818, 318-329.
-
(2012)
Biochim. Biophys. Acta, Biomembr
, vol.1818
, pp. 318-329
-
-
Lucas, T.R.1
Bauer, B.A.2
Patel, S.3
-
21
-
-
80054705191
-
Solvation properties of N-acetyl-β-glucosamine: Molecular dynamics study incorporating electrostatic polarization
-
Zhong, Y.; Bauer, B. A.; Patel, S. Solvation Properties of N-Acetyl-β-Glucosamine: Molecular Dynamics Study Incorporating Electrostatic Polarization. J. Comput. Chem. 2011, 32, 3339-3353.
-
(2011)
J. Comput. Chem
, vol.32
, pp. 3339-3353
-
-
Zhong, Y.1
Bauer, B.A.2
Patel, S.3
-
22
-
-
84872291639
-
Binding structures of tri-N-acetyl-β-glucosamine in hen egg white lysozyme using molecular dynamics with a polarizable force field
-
Zhong, Y.; Patel, S. Binding Structures of Tri-N-Acetyl-β-Glucosamine in Hen Egg White Lysozyme Using Molecular Dynamics with a Polarizable Force Field. J. Comput. Chem. 2013, 34, 163-174.
-
(2013)
J. Comput. Chem
, vol.34
, pp. 163-174
-
-
Zhong, Y.1
Patel, S.2
-
23
-
-
84878362878
-
Temperature dependence and energetics of single ions at the aqueous liquid-vapor interface
-
Ou, S.; Patel, S. Temperature Dependence and Energetics of Single Ions at the Aqueous Liquid-Vapor Interface. J. Phys. Chem. B 2013, 117, 6512-6523.
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 6512-6523
-
-
Ou, S.1
Patel, S.2
-
24
-
-
84885146622
-
Free energetics of arginine permeation into model DMPC lipid bilayers: Coupling of effective counterion concentration and lateral bilayer dimensions
-
Hu, Y.; Ou, S.; Patel, S. Free Energetics of Arginine Permeation into Model DMPC Lipid Bilayers: Coupling of Effective Counterion Concentration and Lateral Bilayer Dimensions. J. Phys. Chem. B 2013, 117, 11641-11653.
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 11641-11653
-
-
Hu, Y.1
Ou, S.2
Patel, S.3
-
25
-
-
0141704114
-
A simple polarizable model of water based on classical drude oscillators
-
Lamoureux, G.; MacKerell, A. D., Jr.; Roux, B. A Simple Polarizable Model of Water Based on Classical Drude Oscillators. J. Chem. Phys. 2003, 119, 5185-5197.
-
(2003)
J. Chem. Phys
, vol.119
, pp. 5185-5197
-
-
Lamoureux, G.1
MacKerell, A.D.2
Roux, B.3
-
26
-
-
0041878923
-
Modeling induced polarization with classical drude oscillators: Theory and molecular dynamics simulation algorithm
-
Lamoureux, G.; Roux, B. Modeling Induced Polarization with Classical Drude Oscillators: Theory and Molecular Dynamics Simulation Algorithm. J. Chem. Phys. 2003, 119, 3025-3039.
-
(2003)
J. Chem. Phys
, vol.119
, pp. 3025-3039
-
-
Lamoureux, G.1
Roux, B.2
-
27
-
-
0035810439
-
Molecular dynamics simulations of water with novel shell-model potentials
-
van Maaren, P. J.; van der Spoel, D. Molecular Dynamics Simulations of Water with Novel Shell-Model Potentials. J. Phys. Chem. B 2001, 105, 2618-2626.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 2618-2626
-
-
Van Maaren, P.J.1
Van Der Spoel, D.2
-
28
-
-
70350406220
-
Development of a nonlinear classical polarization model for liquid water and aqueous solutions: Cos/D
-
Kunz, A.-P. E.; van Gunsteren, W. F. Development of a Nonlinear Classical Polarization Model for Liquid Water and Aqueous Solutions: COS/D. J. Phys. Chem. A 2009, 113, 11570-11579.
-
(2009)
J. Phys. Chem. A
, vol.113
, pp. 11570-11579
-
-
Kunz, A.-P.E.1
Van Gunsteren, W.F.2
-
29
-
-
45949095549
-
Understanding the dielectric properties of liquid amides from a polarizable force field
-
Harder, E.; Anisimov, V. M.; Whitfield, T.; MacKerell, A. D., Jr.; Roux, B. Understanding the Dielectric Properties of Liquid Amides from a Polarizable Force Field. J. Phys. Chem. B 2008, 112, 3509-3521.
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 3509-3521
-
-
Harder, E.1
Anisimov, V.M.2
Whitfield, T.3
MacKerell, A.D.4
Roux, B.5
-
30
-
-
0000161809
-
Molecular polarizabilities calculated with a modified dipole interaction
-
Thole, B. T. Molecular Polarizabilities Calculated with a Modified Dipole Interaction. Chem. Phys. 1981, 59, 341-350.
-
(1981)
Chem. Phys
, vol.59
, pp. 341-350
-
-
Thole, B.T.1
-
31
-
-
30344482264
-
A polarizable model of water for molecular dynamics simulations of biomolecules
-
Lamoureux, G.; Harder, E.; Vorobyov, I. V.; Roux, B.; MacKerell, A. D., Jr. A Polarizable Model of Water for Molecular Dynamics Simulations of Biomolecules. Chem. Phys. Lett. 2006, 418, 245-249.
-
(2006)
Chem. Phys. Lett
, vol.418
, pp. 245-249
-
-
Lamoureux, G.1
Harder, E.2
Vorobyov, I.V.3
Roux, B.4
MacKerell, A.D.5
-
32
-
-
84881159900
-
Polarizable empirical force field for acyclic polyalcohols based on the classical drude oscillator
-
He, X.; Lopes, P. E.; Mackerell, A. D., Jr. Polarizable Empirical Force Field for Acyclic Polyalcohols Based on the Classical Drude Oscillator. Biopolymers 2013, 99, 724-38.
-
(2013)
Biopolymers
, vol.99
, pp. 724-738
-
-
He, X.1
Lopes, P.E.2
Mackerell, A.D.3
-
33
-
-
34047226258
-
Polarizable empirical force field for aromatic compounds based on the classical drude oscillator
-
Lopes, P. E. M.; Lamoureux, G.; Roux, B.; MacKerell, A. D., Jr. Polarizable Empirical Force Field for Aromatic Compounds Based on the Classical Drude Oscillator. J. Phys. Chem. B 2007, 111, 2873-2885.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 2873-2885
-
-
Lopes, P.E.M.1
Lamoureux, G.2
Roux, B.3
MacKerell, A.D.4
-
34
-
-
77956241004
-
Polarizable empirical force field for sulfur-containing compounds based on the classical drude oscillator model
-
Zhu, X.; Mackerell, A. D., Jr. Polarizable Empirical Force Field for Sulfur-Containing Compounds Based on the Classical Drude Oscillator Model. J. Comput. Chem. 2010, 31, 2330-2341.
-
(2010)
J. Comput. Chem
, vol.31
, pp. 2330-2341
-
-
Zhu, X.1
Mackerell, A.D.2
-
35
-
-
77951114392
-
Polarizability rescaling and atom-based thole scaling in the CHARMM drude polarizable force field for ethers
-
Baker, C. M.; MacKerell, A. D., Jr. Polarizability Rescaling and Atom-Based Thole Scaling in the CHARMM Drude Polarizable Force Field for Ethers. J. Mol. Model. 2010, 16, 567-576.
-
(2010)
J. Mol. Model
, vol.16
, pp. 567-576
-
-
Baker, C.M.1
MacKerell, A.D.2
-
36
-
-
77950132714
-
Simulating monovalent and divalent ions in aqueous solution using a drude polarizable force field
-
Yu, H.; Whitfield, T. W.; Harder, E.; Lamoureux, G.; Vorobyov, I.; Anisimov, V. M.; MacKerell, A. D., Jr.; Roux, B. Simulating Monovalent and Divalent Ions in Aqueous Solution Using a Drude Polarizable Force Field. J. Chem. Theory Comput. 2010, 6, 774-786.
-
(2010)
J. Chem. Theory Comput
, vol.6
, pp. 774-786
-
-
Yu, H.1
Whitfield, T.W.2
Harder, E.3
Lamoureux, G.4
Vorobyov, I.5
Anisimov, V.M.6
MacKerell, A.D.7
Roux, B.8
-
37
-
-
78751688849
-
High-performance scalable molecular dynamics simulations of a polarizable force field based on classical drude oscillators in namd
-
Jiang, W.; Hardy, D. J.; Phillips, J. C.; MacKerell, A. D., Jr.; Schulten, K.; Roux, B. High-Performance Scalable Molecular Dynamics Simulations of a Polarizable Force Field Based on Classical Drude Oscillators in Namd. J. Phys. Chem. Lett. 2010, 2, 87-92.
-
(2010)
J. Phys. Chem. Lett
, vol.2
, pp. 87-92
-
-
Jiang, W.1
Hardy, D.J.2
Phillips, J.C.3
MacKerell, A.D.4
Schulten, K.5
Roux, B.6
-
38
-
-
84890447773
-
Polarizable force field for peptides and proteins based on the classical drude oscillator
-
Lopes, P. E. M.; Huang, J.; Shim, J.; Luo, Y.; Li, H.; Roux, B.; MacKerell, A. D., Jr. Polarizable Force Field for Peptides and Proteins Based on the Classical Drude Oscillator. J. Chem. Theory Comput. 2013, 9, 5430-5449.
-
(2013)
J. Chem. Theory Comput
, vol.9
, pp. 5430-5449
-
-
Lopes, P.E.M.1
Huang, J.2
Shim, J.3
Luo, Y.4
Li, H.5
Roux, B.6
MacKerell, A.D.7
-
39
-
-
84900474707
-
All-atom polarizable force field for DNA based on the classical drude oscillator model
-
Savelyev, A.; MacKerell, A. D., Jr. All-Atom Polarizable Force Field for DNA Based on the Classical Drude Oscillator Model. J. Comput. Chem. 2014, 35, 1219-1239.
-
(2014)
J. Comput. Chem
, vol.35
, pp. 1219-1239
-
-
Savelyev, A.1
MacKerell, A.D.2
-
40
-
-
84874604927
-
Derivation of fixed partial charges for amino acids accommodating a specific water model and implicit polarization
-
Cerutti, D. S.; Rice, J. E.; Swope, W. C.; Case, D. A. Derivation of Fixed Partial Charges for Amino Acids Accommodating a Specific Water Model and Implicit Polarization. J. Phys. Chem. B 2013, 117, 2328-2338.
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 2328-2338
-
-
Cerutti, D.S.1
Rice, J.E.2
Swope, W.C.3
Case, D.A.4
-
42
-
-
33750033657
-
Hydrogen bonding and induced dipole moments in water: Predictions from the Gaussian charge polarizable model and car-parrinello molecular dynamics
-
Dyer, P. J.; Cummings, P. T. Hydrogen Bonding and Induced Dipole Moments in Water: Predictions from the Gaussian Charge Polarizable Model and Car-Parrinello Molecular Dynamics. J. Chem. Phys. 2006, 125, 144519.
-
(2006)
J. Chem. Phys
, vol.125
-
-
Dyer, P.J.1
Cummings, P.T.2
-
45
-
-
75749094385
-
Polarization and charge transfer in the hydration of chloride ions
-
Zhao, Z.; Rogers, D. M.; Beck, T. L. Polarization and Charge Transfer in the Hydration of Chloride Ions. J. Chem. Phys. 2010, 132, 014502.
-
(2010)
J. Chem. Phys
, vol.132
-
-
Zhao, Z.1
Rogers, D.M.2
Beck, T.L.3
-
46
-
-
84903158830
-
Induced polarization influences the fundamental forces in DNA base flipping
-
Lemkul, J. A.; Savelyev, A.; MacKerell, A. D., Jr. Induced Polarization Influences the Fundamental Forces in DNA Base Flipping. J. Phys. Chem. Lett. 2014, 5, 2077-2083.
-
(2014)
J. Phys. Chem. Lett
, vol.5
, pp. 2077-2083
-
-
Lemkul, J.A.1
Savelyev, A.2
MacKerell, A.D.3
-
47
-
-
0029833446
-
Charge screening and the dielectric constant of proteins: Insights from molecular dynamics
-
Simonson, T.; Brooks, C. L. Charge Screening and the Dielectric Constant of Proteins: Insights from Molecular Dynamics. J. Am. Chem. Soc. 1996, 118, 8452-8458.
-
(1996)
J. Am. Chem. Soc
, vol.118
, pp. 8452-8458
-
-
Simonson, T.1
Brooks, C.L.2
-
48
-
-
0025847876
-
Intramolecular dielectric screening in proteins
-
Simonson, T.; Perahia, D.; Bricogne, G. Intramolecular Dielectric Screening in Proteins. J. Mol. Biol. 1991, 218, 859-886.
-
(1991)
J. Mol. Biol
, vol.218
, pp. 859-886
-
-
Simonson, T.1
Perahia, D.2
Bricogne, G.3
-
49
-
-
0030910225
-
Electrostatics of proteins: Description in terms of two dielectric constants simultaneously
-
Krishtalik, L. I.; Kuznetsov, A. M.; Mertz, E. L. Electrostatics of Proteins: Description in Terms of Two Dielectric Constants Simultaneously. Proteins: Struct., Funct., Bioinf. 1997, 28, 174-182.
-
(1997)
Proteins: Struct., Funct., Bioinf
, vol.28
, pp. 174-182
-
-
Krishtalik, L.I.1
Kuznetsov, A.M.2
Mertz, E.L.3
-
50
-
-
80052769847
-
The medium reorganization energy for the charge transfer reactions in proteins
-
Krishtalik, L. I. The Medium Reorganization Energy for the Charge Transfer Reactions in Proteins. Biochim. Biophys. Acta, Bioenerg. 2011, 1807, 1444-1456.
-
(2011)
Biochim. Biophys. Acta, Bioenerg
, vol.1807
, pp. 1444-1456
-
-
Krishtalik, L.I.1
-
51
-
-
83755168879
-
The high dielectric constant of staphylococcal nuclease is encoded in its structural architecture
-
Goh, G. B.; García-Moreno E, B.; Brooks, C. L. The High Dielectric Constant of Staphylococcal Nuclease Is Encoded in Its Structural Architecture. J. Am. Chem. Soc. 2011, 133, 20072-20075.
-
(2011)
J. Am. Chem. Soc
, vol.133
, pp. 20072-20075
-
-
Goh, G.B.1
García-Moreno, E.B.2
Brooks, C.L.3
-
52
-
-
0005829624
-
Dielectric properties of protein powders with adsorbed water
-
Rosen, D. Dielectric Properties of Protein Powders with Adsorbed Water. Trans. Faraday Soc. 1963, 59, 2178-2191.
-
(1963)
Trans. Faraday Soc
, vol.59
, pp. 2178-2191
-
-
Rosen, D.1
-
53
-
-
0000083584
-
Microscopic simulations of macroscopic dielectric constants of solvated proteins
-
King, G.; Lee, F. S.; Warshel, A. Microscopic Simulations of Macroscopic Dielectric Constants of Solvated Proteins. J. Chem. Phys. 1991, 95, 4366-4377.
-
(1991)
J. Chem. Phys
, vol.95
, pp. 4366-4377
-
-
King, G.1
Lee, F.S.2
Warshel, A.3
-
54
-
-
0035451052
-
What are the dielectric "Constants" of proteins and how to validate electrostatic models?
-
Schutz, C. N.; Warshel, A. What Are the Dielectric "Constants" of Proteins and How to Validate Electrostatic Models? Proteins: Struct., Funct., Bioinf. 2001, 44, 400-417.
-
(2001)
Proteins: Struct., Funct., Bioinf
, vol.44
, pp. 400-417
-
-
Schutz, C.N.1
Warshel, A.2
-
55
-
-
79952731796
-
A theory for the anisotropic and inhomogeneous dielectric properties of proteins
-
Guest, W. C.; Cashman, N. R.; Plotkin, S. S. A Theory for the Anisotropic and Inhomogeneous Dielectric Properties of Proteins. Phys. Chem. Chem. Phys. 2011, 13, 6286-6295.
-
(2011)
Phys. Chem. Chem. Phys
, vol.13
, pp. 6286-6295
-
-
Guest, W.C.1
Cashman, N.R.2
Plotkin, S.S.3
-
56
-
-
84902951608
-
Balancing the interactions of ions, water, and DNA in the drude polarizable force field
-
Savelyev, A.; MacKerell, A. D. Balancing the Interactions of Ions, Water, and DNA in the Drude Polarizable Force Field. J. Phys. Chem. B 2014, 118, 6742-6757.
-
(2014)
J. Phys. Chem. B
, vol.118
, pp. 6742-6757
-
-
Savelyev, A.1
MacKerell, A.D.2
-
57
-
-
84881405929
-
A polarizable force field of dipalmitoylphospha-tidylcholine based on the classical drude model for molecular dynamics simulations of lipids
-
Chowdhary, J.; Harder, E.; Lopes, P. E.; Huang, L.; MacKerell, A. D., Jr.; Roux, B. A Polarizable Force Field of Dipalmitoylphospha-tidylcholine Based on the Classical Drude Model for Molecular Dynamics Simulations of Lipids. J. Phys. Chem. B 2013, 117, 9142-60.
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 9142-9160
-
-
Chowdhary, J.1
Harder, E.2
Lopes, P.E.3
Huang, L.4
MacKerell, A.D.5
Roux, B.6
-
58
-
-
84902971502
-
Polarizable empirical force field for hexopyranose monosaccharides based on the classical drude oscillator
-
Patel, D. S.; He, X.; MacKerell, A. D., Jr. Polarizable Empirical Force Field for Hexopyranose Monosaccharides Based on the Classical Drude Oscillator. J. Phys. Chem. B 2014, DOI: 10.1021/jp412696m.
-
(2014)
J. Phys. Chem. B
-
-
Patel, D.S.1
He, X.2
MacKerell, A.D.3
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