메뉴 건너뛰기




Volumn 113, Issue 40, 2016, Pages 11354-11359

Functional analysis of molecular interactions in synthetic auxin response circuits

Author keywords

ARF; Auxin signaling; PB1; Synthetic circuits; Transcription

Indexed keywords

AUXIN; AUXIN RESPONSE FACTOR; DIMER; DNA; INDOLEACETIC ACID; MONOMER; SYNTHETIC PEPTIDE; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; HYBRID PROTEIN; INDOLEACETIC ACID DERIVATIVE;

EID: 84989864104     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1604379113     Document Type: Article
Times cited : (46)

References (50)
  • 1
    • 19544379019 scopus 로고    scopus 로고
    • The F-box protein TIR1 is an auxin receptor
    • Dharmasiri N, Dharmasiri S, Estelle M (2005) The F-box protein TIR1 is an auxin receptor. Nature 435(7041):441-445.
    • (2005) Nature , vol.435 , Issue.7041 , pp. 441-445
    • Dharmasiri, N.1    Dharmasiri, S.2    Estelle, M.3
  • 2
    • 19544386804 scopus 로고    scopus 로고
    • The Arabidopsis F-box protein TIR1 is an auxin receptor
    • Kepinski S, Leyser O (2005) The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature 435(7041):446-451.
    • (2005) Nature , vol.435 , Issue.7041 , pp. 446-451
    • Kepinski, S.1    Leyser, O.2
  • 3
    • 71149122029 scopus 로고    scopus 로고
    • Mechanism of auxin-regulated gene expression in plants
    • Chapman EJ, Estelle M (2009) Mechanism of auxin-regulated gene expression in plants. Annu Rev Genet 43:265-285.
    • (2009) Annu Rev Genet , vol.43 , pp. 265-285
    • Chapman, E.J.1    Estelle, M.2
  • 4
    • 67650487252 scopus 로고    scopus 로고
    • The evolution of nuclear auxin signalling
    • Paponov IA, et al. (2009) The evolution of nuclear auxin signalling. BMC Evol Biol 9:126.
    • (2009) BMC Evol Biol , vol.9 , pp. 126
    • Paponov, I.A.1
  • 5
    • 3543024524 scopus 로고    scopus 로고
    • Contrasting modes of diversification in the Aux/IAA and ARF gene families
    • Remington DL, Vision TJ, Guilfoyle TJ, Reed JW (2004) Contrasting modes of diversification in the Aux/IAA and ARF gene families. Plant Physiol 135(3):1738-1752.
    • (2004) Plant Physiol , vol.135 , Issue.3 , pp. 1738-1752
    • Remington, D.L.1    Vision, T.J.2    Guilfoyle, T.J.3    Reed, J.W.4
  • 6
    • 70349559408 scopus 로고    scopus 로고
    • Auxin enters the matrix - Assembly of response machineries for specific outputs
    • Lokerse AS, Weijers D (2009) Auxin enters the matrix - Assembly of response machineries for specific outputs. Curr Opin Plant Biol 12(5):520-526.
    • (2009) Curr Opin Plant Biol , vol.12 , Issue.5 , pp. 520-526
    • Lokerse, A.S.1    Weijers, D.2
  • 7
    • 84904270008 scopus 로고    scopus 로고
    • Diversity and specificity: Auxin perception and signaling through the TIR1/AFB pathway
    • Wang R, Estelle M (2014) Diversity and specificity: Auxin perception and signaling through the TIR1/AFB pathway. Curr Opin Plant Biol 21:51-58.
    • (2014) Curr Opin Plant Biol , vol.21 , pp. 51-58
    • Wang, R.1    Estelle, M.2
  • 8
    • 84860323198 scopus 로고    scopus 로고
    • Getting a grasp on domain III/IV responsible for Auxin Response Factor-IAA protein interactions
    • Guilfoyle TJ, Hagen G (2012) Getting a grasp on domain III/IV responsible for Auxin Response Factor-IAA protein interactions. Plant Sci 190:82-88.
    • (2012) Plant Sci , vol.190 , pp. 82-88
    • Guilfoyle, T.J.1    Hagen, G.2
  • 9
    • 84898031355 scopus 로고    scopus 로고
    • Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression
    • Korasick DA, et al. (2014) Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression. Proc Natl Acad Sci USA 111(14):5427-5432.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.14 , pp. 5427-5432
    • Korasick, D.A.1
  • 10
    • 84903725007 scopus 로고    scopus 로고
    • Structural basis for oligomerization of auxin transcriptional regulators
    • Nanao MH, et al. (2014) Structural basis for oligomerization of auxin transcriptional regulators. Nat Commun 5:3617.
    • (2014) Nat Commun , vol.5 , pp. 3617
    • Nanao, M.H.1
  • 11
    • 84922975946 scopus 로고    scopus 로고
    • Structural basis for the auxin-induced transcriptional regulation by Aux/IAA17
    • Han M, et al. (2014) Structural basis for the auxin-induced transcriptional regulation by Aux/IAA17. Proc Natl Acad Sci USA 111(52):18613-18618.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.52 , pp. 18613-18618
    • Han, M.1
  • 12
    • 84929224112 scopus 로고    scopus 로고
    • Solution structure of the PsIAA4 oligomerization domain reveals interaction modes for transcription factors in early auxin response
    • Dinesh DC, et al. (2015) Solution structure of the PsIAA4 oligomerization domain reveals interaction modes for transcription factors in early auxin response. Proc Natl Acad Sci USA 112(19):6230-6235.
    • (2015) Proc Natl Acad Sci USA , vol.112 , Issue.19 , pp. 6230-6235
    • Dinesh, D.C.1
  • 13
    • 0030671551 scopus 로고    scopus 로고
    • Protein-protein interactions among the Aux/IAA proteins
    • Kim J, Harter K, Theologis A (1997) Protein-protein interactions among the Aux/IAA proteins. Proc Natl Acad Sci USA 94(22):11786-11791.
    • (1997) Proc Natl Acad Sci USA , vol.94 , Issue.22 , pp. 11786-11791
    • Kim, J.1    Harter, K.2    Theologis, A.3
  • 14
    • 0033180359 scopus 로고    scopus 로고
    • Dimerization and DNA binding of auxin response factors
    • Ulmasov T, Hagen G, Guilfoyle TJ (1999) Dimerization and DNA binding of auxin response factors. Plant J 19(3):309-319.
    • (1999) Plant J , vol.19 , Issue.3 , pp. 309-319
    • Ulmasov, T.1    Hagen, G.2    Guilfoyle, T.J.3
  • 15
    • 79960090553 scopus 로고    scopus 로고
    • The auxin signalling network translates dynamic input into robust patterning at the shoot apex
    • Vernoux T, et al. (2011) The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Mol Syst Biol 7:508.
    • (2011) Mol Syst Biol , vol.7 , pp. 508
    • Vernoux, T.1
  • 16
    • 84893463142 scopus 로고    scopus 로고
    • Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors
    • Boer DR, et al. (2014) Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156(3):577-589.
    • (2014) Cell , vol.156 , Issue.3 , pp. 577-589
    • Boer, D.R.1
  • 17
    • 84930958935 scopus 로고    scopus 로고
    • Refining the nuclear auxin response pathway through structural biology
    • Korasick DA, Jez JM, Strader LC (2015) Refining the nuclear auxin response pathway through structural biology. Curr Opin Plant Biol 27:22-28.
    • (2015) Curr Opin Plant Biol , vol.27 , pp. 22-28
    • Korasick, D.A.1    Jez, J.M.2    Strader, L.C.3
  • 18
    • 84949454828 scopus 로고    scopus 로고
    • Structural biology of nuclear auxin action
    • Dinesh DC, Villalobos LI, Abel S (2016) Structural biology of nuclear auxin action. Trends Plant Sci 21(4):302-316.
    • (2016) Trends Plant Sci , vol.21 , Issue.4 , pp. 302-316
    • Dinesh, D.C.1    Villalobos, L.I.2    Abel, S.3
  • 20
    • 0035999463 scopus 로고    scopus 로고
    • Auxin-responsive gene expression: Genes, promoters and regulatory factors
    • Hagen G, Guilfoyle T (2002) Auxin-responsive gene expression: Genes, promoters and regulatory factors. Plant Mol Biol 49(3-4):373-385.
    • (2002) Plant Mol Biol , vol.49 , Issue.3-4 , pp. 373-385
    • Hagen, G.1    Guilfoyle, T.2
  • 21
    • 0030796237 scopus 로고    scopus 로고
    • ARF1, a transcription factor that binds to auxin response elements
    • Ulmasov T, Hagen G, Guilfoyle TJ (1997) ARF1, a transcription factor that binds to auxin response elements. Science 276(5320):1865-1868.
    • (1997) Science , vol.276 , Issue.5320 , pp. 1865-1868
    • Ulmasov, T.1    Hagen, G.2    Guilfoyle, T.J.3
  • 22
    • 0037329943 scopus 로고    scopus 로고
    • The roles of auxin response factor domains in auxin-responsive transcription
    • Tiwari SB, Hagen G, Guilfoyle T (2003) The roles of auxin response factor domains in auxin-responsive transcription. Plant Cell 15(2):533-543.
    • (2003) Plant Cell , vol.15 , Issue.2 , pp. 533-543
    • Tiwari, S.B.1    Hagen, G.2    Guilfoyle, T.3
  • 23
    • 0033545881 scopus 로고    scopus 로고
    • Activation and repression of transcription by auxin-response factors
    • Ulmasov T, Hagen G, Guilfoyle TJ (1999) Activation and repression of transcription by auxin-response factors. Proc Natl Acad Sci USA 96(10):5844-5849.
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.10 , pp. 5844-5849
    • Ulmasov, T.1    Hagen, G.2    Guilfoyle, T.J.3
  • 24
    • 0031277708 scopus 로고    scopus 로고
    • Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements
    • Ulmasov T, Murfett J, Hagen G, Guilfoyle TJ (1997) Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. Plant Cell 9(11):1963-1971.
    • (1997) Plant Cell , vol.9 , Issue.11 , pp. 1963-1971
    • Ulmasov, T.1    Murfett, J.2    Hagen, G.3    Guilfoyle, T.J.4
  • 25
    • 84975134214 scopus 로고    scopus 로고
    • Cistrome and epicistrome features shape the regulatory DNA landscape
    • O'Malley RC, et al. (2016) Cistrome and epicistrome features shape the regulatory DNA landscape. Cell 165(5):1280-1292.
    • (2016) Cell , vol.165 , Issue.5 , pp. 1280-1292
    • O'Malley, R.C.1
  • 26
    • 0036007983 scopus 로고    scopus 로고
    • Lateral root formation is blocked by a gain-of-function mutation in the SOLITARY-ROOT/IAA14 gene of Arabidopsis
    • Fukaki H, Tameda S, Masuda H, Tasaka M (2002) Lateral root formation is blocked by a gain-of-function mutation in the SOLITARY-ROOT/IAA14 gene of Arabidopsis. Plant J 29(2):153-168.
    • (2002) Plant J , vol.29 , Issue.2 , pp. 153-168
    • Fukaki, H.1    Tameda, S.2    Masuda, H.3    Tasaka, M.4
  • 27
    • 33644836631 scopus 로고    scopus 로고
    • Tissue-specific expression of stabilized SOLITARY-ROOT/IAA14 alters lateral root development in Arabidopsis
    • Fukaki H, Nakao Y, Okushima Y, Theologis A, Tasaka M (2005) Tissue-specific expression of stabilized SOLITARY-ROOT/IAA14 alters lateral root development in Arabidopsis. Plant J 44(3):382-395.
    • (2005) Plant J , vol.44 , Issue.3 , pp. 382-395
    • Fukaki, H.1    Nakao, Y.2    Okushima, Y.3    Theologis, A.4    Tasaka, M.5
  • 28
    • 84923310532 scopus 로고    scopus 로고
    • Auxin-induced degradation dynamics set the pace for lateral root development
    • Guseman JM, et al. (2015) Auxin-induced degradation dynamics set the pace for lateral root development. Development 142(5):905-909.
    • (2015) Development , vol.142 , Issue.5 , pp. 905-909
    • Guseman, J.M.1
  • 29
    • 84940901789 scopus 로고    scopus 로고
    • Rate motifs tune auxin/indole-3-acetic acid degradation dynamics
    • Moss BL, et al. (2015) Rate motifs tune auxin/indole-3-acetic acid degradation dynamics. Plant Physiol 169(1):803-813.
    • (2015) Plant Physiol , vol.169 , Issue.1 , pp. 803-813
    • Moss, B.L.1
  • 30
    • 84958814497 scopus 로고    scopus 로고
    • Structural basis for recognition of diverse transcriptional repressors by the TOPLESS family of corepressors
    • Ke J, et al. (2015) Structural basis for recognition of diverse transcriptional repressors by the TOPLESS family of corepressors. Sci Adv 1(6):e1500107.
    • (2015) Sci Adv , vol.1 , Issue.6
    • Ke, J.1
  • 31
    • 84878343397 scopus 로고    scopus 로고
    • Tuning the auxin transcriptional response
    • Pierre-Jerome E, Moss BL, Nemhauser JL (2013) Tuning the auxin transcriptional response. J Exp Bot 64(9):2557-2563.
    • (2013) J Exp Bot , vol.64 , Issue.9 , pp. 2557-2563
    • Pierre-Jerome, E.1    Moss, B.L.2    Nemhauser, J.L.3
  • 32
    • 0034283159 scopus 로고    scopus 로고
    • The strength of acidic activation domains correlates with their affinity for both transcriptional and non-transcriptional proteins
    • Melcher K (2000) The strength of acidic activation domains correlates with their affinity for both transcriptional and non-transcriptional proteins. J Mol Biol 301(5):1097-1112.
    • (2000) J Mol Biol , vol.301 , Issue.5 , pp. 1097-1112
    • Melcher, K.1
  • 33
    • 84946592895 scopus 로고    scopus 로고
    • Auxin-regulated chromatin switch directs acquisition of flower primordium founder fate
    • Wu MF, et al. (2015) Auxin-regulated chromatin switch directs acquisition of flower primordium founder fate. eLife 4:e09269.
    • (2015) eLife , vol.4
    • Wu, M.F.1
  • 34
    • 34848899527 scopus 로고    scopus 로고
    • The Arabidopsis transcription factor MYB77 modulates auxin signal transduction
    • Shin R, et al. (2007) The Arabidopsis transcription factor MYB77 modulates auxin signal transduction. Plant Cell 19(8):2440-2453.
    • (2007) Plant Cell , vol.19 , Issue.8 , pp. 2440-2453
    • Shin, R.1
  • 35
    • 79955574209 scopus 로고    scopus 로고
    • AUXIN RESPONSE FACTOR8 regulates Arabidopsis petal growth by interacting with the bHLH transcription factor BIGPETALp
    • Varaud E, et al. (2011) AUXIN RESPONSE FACTOR8 regulates Arabidopsis petal growth by interacting with the bHLH transcription factor BIGPETALp. Plant Cell 23(3):973-983.
    • (2011) Plant Cell , vol.23 , Issue.3 , pp. 973-983
    • Varaud, E.1
  • 36
    • 84864411395 scopus 로고    scopus 로고
    • Bioinformatic cis-element analyses performed in Arabidopsis and rice disclose bZIP- and MYB-related binding sites as potential AuxRE-coupling elements in auxin-mediated transcription
    • Berendzen KW, et al. (2012) Bioinformatic cis-element analyses performed in Arabidopsis and rice disclose bZIP- and MYB-related binding sites as potential AuxRE-coupling elements in auxin-mediated transcription. BMC Plant Biol 12:125.
    • (2012) BMC Plant Biol , vol.12 , pp. 125
    • Berendzen, K.W.1
  • 37
    • 0029391276 scopus 로고
    • Composite structure of auxin response elements
    • Ulmasov T, Liu ZB, Hagen G, Guilfoyle TJ (1995) Composite structure of auxin response elements. Plant Cell 7(10):1611-1623.
    • (1995) Plant Cell , vol.7 , Issue.10 , pp. 1611-1623
    • Ulmasov, T.1    Liu, Z.B.2    Hagen, G.3    Guilfoyle, T.J.4
  • 38
    • 84855266776 scopus 로고    scopus 로고
    • Bipartite promoter element required for auxin response
    • Walcher CL, Nemhauser JL (2012) Bipartite promoter element required for auxin response. Plant Physiol 158(1):273-282.
    • (2012) Plant Physiol , vol.158 , Issue.1 , pp. 273-282
    • Walcher, C.L.1    Nemhauser, J.L.2
  • 39
    • 84941217102 scopus 로고    scopus 로고
    • Structural basis of JAZ repression of MYC transcription factors in jasmonate signalling
    • Zhang F, et al. (2015) Structural basis of JAZ repression of MYC transcription factors in jasmonate signalling. Nature 525(7568):269-273.
    • (2015) Nature , vol.525 , Issue.7568 , pp. 269-273
    • Zhang, F.1
  • 40
    • 84973315113 scopus 로고    scopus 로고
    • Auxin-dependent compositional change in Mediator in ARF7- and ARF19-mediated transcription
    • Ito J, et al. (2016) Auxin-dependent compositional change in Mediator in ARF7- and ARF19-mediated transcription. Proc Natl Acad Sci USA 113(23):6562-6567.
    • (2016) Proc Natl Acad Sci USA , vol.113 , Issue.23 , pp. 6562-6567
    • Ito, J.1
  • 41
    • 84891302591 scopus 로고    scopus 로고
    • A secreted peptide acts on BIN2-mediated phosphorylation of ARFs to potentiate auxin response during lateral root development
    • Cho H, et al. (2014) A secreted peptide acts on BIN2-mediated phosphorylation of ARFs to potentiate auxin response during lateral root development. Nat Cell Biol 16(1):66-76.
    • (2014) Nat Cell Biol , vol.16 , Issue.1 , pp. 66-76
    • Cho, H.1
  • 42
    • 84894849355 scopus 로고    scopus 로고
    • A map of cell type-specific auxin responses
    • Bargmann BO, et al. (2013) A map of cell type-specific auxin responses. Mol Syst Biol 9:688.
    • (2013) Mol Syst Biol , vol.9 , pp. 688
    • Bargmann, B.O.1
  • 43
    • 84886496719 scopus 로고    scopus 로고
    • A kinetic analysis of the auxin transcriptome reveals cell wall remodeling proteins that modulate lateral root development in Arabidopsis
    • Lewis DR, et al. (2013) A kinetic analysis of the auxin transcriptome reveals cell wall remodeling proteins that modulate lateral root development in Arabidopsis. Plant Cell 25(9):3329-3346.
    • (2013) Plant Cell , vol.25 , Issue.9 , pp. 3329-3346
    • Lewis, D.R.1
  • 44
    • 80855137952 scopus 로고    scopus 로고
    • A cellular expression map of the Arabidopsis AUXIN RESPONSE FACTOR gene family
    • Rademacher EH, et al. (2011) A cellular expression map of the Arabidopsis AUXIN RESPONSE FACTOR gene family. Plant J 68(4):597-606.
    • (2011) Plant J , vol.68 , Issue.4 , pp. 597-606
    • Rademacher, E.H.1
  • 45
    • 67349270900 scopus 로고    scopus 로고
    • Enzymatic assembly of DNA molecules up to several hundred kilobases
    • Gibson DG, et al. (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods 6(5):343-345.
    • (2009) Nat Methods , vol.6 , Issue.5 , pp. 343-345
    • Gibson, D.G.1
  • 46
    • 84865848723 scopus 로고    scopus 로고
    • A synthetic approach reveals extensive tunability of auxin signaling
    • Havens KA, et al. (2012) A synthetic approach reveals extensive tunability of auxin signaling. Plant Physiol 160(1):135-142.
    • (2012) Plant Physiol , vol.160 , Issue.1 , pp. 135-142
    • Havens, K.A.1
  • 47
    • 0036270543 scopus 로고    scopus 로고
    • Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method
    • Gietz RD, Woods RA (2002) Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol 350:87-96.
    • (2002) Methods Enzymol , vol.350 , pp. 87-96
    • Gietz, R.D.1    Woods, R.A.2
  • 48
    • 84896983020 scopus 로고    scopus 로고
    • Coimmunoprecipitation of proteins from yeast
    • Gerace E, Moazed D (2014) Coimmunoprecipitation of proteins from yeast. Methods Enzymol 541:13-26.
    • (2014) Methods Enzymol , vol.541 , pp. 13-26
    • Gerace, E.1    Moazed, D.2
  • 49
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
    • Clough SJ, Bent AF (1998) Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16(6):735-743.
    • (1998) Plant J , vol.16 , Issue.6 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2
  • 50
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29(9):e45.
    • (2001) Nucleic Acids Res , vol.29 , Issue.9 , pp. e45
    • Pfaffl, M.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.