Auxin-dependent compositional change in Mediator in ARF7- and ARF19-mediated transcription

Proceedings of the National Academy of Sciences of the United States of America

Volumn 113, Issue 23, 2016, Pages 6562-6567

  Ito, Jun ^a   Fukaki, Hidehiro ^b   Onoda, Makoto ^a   Li, Lin ^c   Li, Chuanyou ^c   Tasaka, Masao ^a   Furutani, Masahiko ^a,d  

^a NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^b KOBE UNIVERSITY   (Japan)

^c INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

^d NAGOYA UNIVERSITY   (Japan)

Author keywords

Auxin response; CDK8 kinase module; Lateral root formation; Mediator complex

Indexed keywords

AUXIN; AUXIN RESPONSE FACTOR 19; AUXIN RESPONSE FACTOR 7; CYCLIN DEPENDENT KINASE 8; INDOLEACETIC ACID; LATERAL ORGAN BOUNDARY DOMAIN 16 PROTEIN; LATERAL ORGAN BOUNDARY DOMAIN 29 PROTEIN; MAB2 PROTEIN; MED13 PROTEIN; MED25 PROTEIN; MEDIATOR COMPLEX; MYC PROTEIN; PHYTOCHROME; PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; ARABIDOPSIS PROTEIN; ARF19 PROTEIN, ARABIDOPSIS; ARF7 PROTEIN, ARABIDOPSIS; GRAND CENTRAL PROTEIN, ARABIDOPSIS; IAA14 PROTEIN, ARABIDOPSIS; INDOLEACETIC ACID DERIVATIVE; REPRESSOR PROTEIN;

ARABIDOPSIS THALIANA; ARTICLE; CELL DIVISION; CHEMICAL INTERACTION; CONTROLLED STUDY; GENETIC TRANSCRIPTION; NONHUMAN; PLANT ROOT; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; PROTOPLAST; SIGNAL TRANSDUCTION; TRANSCRIPTION INITIATION; TRANSCRIPTIONAL REPRESSION; ARABIDOPSIS; DRUG EFFECTS; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; TRANSGENIC PLANT;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; GENE EXPRESSION REGULATION, PLANT; INDOLEACETIC ACIDS; PLANTS, GENETICALLY MODIFIED; REPRESSOR PROTEINS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 84973315113     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1600739113     Document Type: Article

References (45)

1. Malik S, Roeder RG (2005) Dynamic regulation of pol II transcription by the mammalian Mediator complex. Trends Biochem Sci 30(5):256-263.
2. Yin JW, Wang G (2014) The Mediator complex: A master coordinator of transcription and cell lineage development. Development 141(5):977-987.
3. Carlsten JO, Zhu X, Gustafsson CM (2013) The multitalented Mediator complex. Trends Biochem Sci 38(11):531-537.
4. Tsai KL, et al. (2014) Subunit architecture and functional modular rearrangements of the transcriptional mediator complex. Cell 157(6):1430-1444.
5. Elmlund H, et al. (2006) The cyclin-dependent kinase 8 module sterically blocks Mediator interactions with RNA polymerase II. Proc Natl Acad Sci USA 103(43): 15788-15793.
6. Tsai KL, et al. (2013) A conserved Mediator-CDK8 kinase module association regulates Mediator-RNA polymerase II interaction. Nat Struct Mol Biol 20(5):611-619.
7. Allen BL, Taatjes DJ (2015) The Mediator complex: A central integrator of transcription. Nat Rev Mol Cell Biol 16(3):155-166.
8. Bäckström S, Elfving N, Nilsson R, Wingsle G, Björklund S (2007) Purification of a plant mediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit. Mol Cell 26(5):717-729.
9. Imura Y, et al. (2012) CRYPTIC PRECOCIOUS/MED12 is a novel flowering regulator with multiple target steps in Arabidopsis. Plant Cell Physiol 53(2):287-303.
10. Gillmor CS, et al. (2010) The MED12-MED13 module of Mediator regulates the timing of embryo patterning in Arabidopsis. Development 137(1):113-122.
11. Ito J, Sono T, Tasaka M, Furutani M (2011) MACCHI-BOU 2 is required for early embryo patterning and cotyledon organogenesis in Arabidopsis. Plant Cell Physiol 52(3): 539-552.
12. Wang W, Chen X (2004) HUA ENHANCER3 reveals a role for a cyclin-dependent protein kinase in the specification of floral organ identity in Arabidopsis. Development 131(13): 3147-3156.
13. An C, Mou Z (2013) The function of the Mediator complex in plant immunity. Plant Signal Behav 8(3):e23182.
14. Kidd BN, Cahill DM, Manners JM, Schenk PM, Kazan K (2011) Diverse roles of the Mediator complex in plants. Semin Cell Dev Biol 22(7):741-748.
15. Samanta S, Thakur JK (2015) Importance of Mediator complex in the regulation and integration of diverse signaling pathways in plants. Front Plant Sci 6(6):757.
16. Vanneste S, Friml J (2009) Auxin: A trigger for change in plant development. Cell 136(6):1005-1016.
17. Salehin M, Bagchi R, Estelle M (2015) SCFTIR1/AFB-based auxin perception: Mechanism and role in plant growth and development. Plant Cell 27(1):9-19.
18. Santner A, Calderon-Villalobos LI, Estelle M (2009) Plant hormones are versatile chemical regulators of plant growth. Nat Chem Biol 5(5):301-307.
19. Korasick DA, et al. (2014) Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression. Proc Natl Acad Sci USA 111(14):5427-5432.
20. Nanao MH, et al. (2014) Structural basis for oligomerization of auxin transcriptional regulators. Nat Commun 5(5):3617.
21. Long JA, Ohno C, Smith ZR, Meyerowitz EM (2006) TOPLESS regulates apical embryonic fate in Arabidopsis. Science 312(5779):1520-1523.
22. Szemenyei H, Hannon M, Long JA (2008) TOPLESS mediates auxin-dependent transcriptional repression during Arabidopsis embryogenesis. Science 319(5868):1384-1386.
23. Lavenus J, et al. (2013) Lateral root development in Arabidopsis: Fifty shades of auxin. Trends Plant Sci 18(8):450-458.
24. Okushima Y, et al. (2005) Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: Unique and overlapping functions of ARF7 and ARF19. Plant Cell 17(2):444-463.
25. Okushima Y, Fukaki H, Onoda M, Theologis A, Tasaka M (2007) ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis. Plant Cell 19(1):118-130.
26. Iwakawa H, et al. (2002) The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant Cell Physiol 43(5):467-478.
27. Shuai B, Reynaga-Peña CG, Springer PS (2002) The lateral organ boundaries gene defines a novel, plant-specific gene family. Plant Physiol 129(2):747-761.
28. Fukaki H, Tameda S, Masuda H, Tasaka M (2002) Lateral root formation is blocked by a gain-of-function mutation in the SOLITARY-ROOT/IAA14 gene of Arabidopsis. Plant J 29(2):153-168.
29. Gonzalez D, Bowen AJ, Carroll TS, Conlan RS (2007) The transcription corepressor LEUNIG interacts with the histone deacetylase HDA19 and mediator components MED14 (SWP) and CDK8 (HEN3) to repress transcription. Mol Cell Biol 27(15):5306-5315.
30. Hayashi K, et al. (2012) Rational design of an auxin antagonist of the SCF(TIR1) auxin receptor complex. ACS Chem Biol 7(3):590-598.
31. Raya-González J, Ortiz-Castro R, Ruíz-Herrera LF, Kazan K, López-Bucio J (2014) PHYTOCHROME AND FLOWERING TIME1/MEDIATOR25 regulates lateral root formation via auxin signaling in Arabidopsis. Plant Physiol 165(2):880-894.
32. Chen R, et al. (2012) The Arabidopsis mediator subunit MED25 differentially regulates jasmonate and abscisic acid signaling through interacting with the MYC2 and ABI5 transcription factors. Plant Cell 24(7):2898-2916.
33. Krogan NT, Hogan K, Long JA (2012) APETALA2 negatively regulates multiple floral organ identity genes in Arabidopsis by recruiting the co-repressor TOPLESS and the histone deacetylase HDA19. Development 139(22):4180-4190.
34. Wang L, Kim J, Somers DE (2013) Transcriptional corepressor TOPLESS complexes with pseudoresponse regulator proteins and histone deacetylases to regulate circadian transcription. Proc Natl Acad Sci USA 110(2):761-766.
35. Xu R, Li Y (2012) The Mediator complex subunit 8 regulates organ size in Arabidopsis thaliana. Plant Signal Behav 7(2):182-183.
36. Alonso JM, et al. (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-657.
37. Fukaki H, Fujisawa H, Tasaka M (1996) Gravitropic response of inflorescence stems in Arabidopsis thaliana. Plant Physiol 110(3):933-943.
38. Nakagawa T, et al. (2007) Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation. J Biosci Bioeng 104(1):34-41.
39. Clough SJ, Bent AF (1998) Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16(6):735-743.
40. Saleh A, Alvarez-Venegas R, Avramova Z (2008) An efficient chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in Arabidopsis plants. Nat Protoc 3(6):1018-1025.
41. Paciorek T, Sauer M, Balla J, Wişniewska J, Friml J (2006) Immunocytochemical technique for protein localization in sections of plant tissues. Nat Protoc 1(1):104-107.
42. Malamy JE, Benfey PN (1997) Organization and cell differentiation in lateral roots of Arabidopsis thaliana. Development 124(1):33-44.
43. Taoka K, et al. (2011) 14-3-3 proteins act as intracellular receptors for rice Hd3a florigen. Nature 476(7360):332-335.
44. Robatzek S, Somssich IE (2001) A new member of the Arabidopsis WRKY transcription factor family, AtWRKY6, is associated with both senescence- and defence-related processes. Plant J 28(2):123-133.
45. Takeuchi M, et al. (2000) A dominant negative mutant of sar1 GTPase inhibits protein transport from the endoplasmic reticulum to the Golgi apparatus in tobacco and Arabidopsis cultured cells. Plant J 23(4):517-525.