Rate motifs tune auxin/indole-3-acetic acid degradation dynamics

Plant Physiology

Volumn 169, Issue 1, 2015, Pages 803-813

  Moss, Britney L ^a   Mao, Haibin ^a   Guseman, Jessica M ^a   Hinds, Thomas R ^a   Hellmuth, Antje ^b   Kovenock, Marlies ^a   Noorassa, Anisa ^a   Lanctot, Amy ^a   Calderón Villalobos, Luz Irina A ^b   Zheng, Ning ^a,c   Nemhauser, Jennifer L ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

^b LEIBNIZ INSTITUTE OF PLANT BIOCHEMISTRY   (Germany)

^c HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

INDOLEACETIC ACID; INDOLEACETIC ACID DERIVATIVE; PLANT PROTEIN; PROTEIN BINDING;

CHEMISTRY; DRUG EFFECTS; METABOLISM; PLANT ROOT; PROTEIN DEGRADATION; PROTEIN MOTIF; PROTEIN TERTIARY STRUCTURE;

AMINO ACID MOTIFS; INDOLEACETIC ACIDS; PLANT PROTEINS; PLANT ROOTS; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; PROTEOLYSIS;

EID: 84940901789     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.15.00587     Document Type: Article

References (44)

1. Abel S, Oeller PW, Theologis A (1994) Early auxin-induced genes encode short-lived nuclear proteins. Proc Natl Acad Sci USA 91: 326-330
2. Bowers JE, Chapman BA, Rong J, Paterson AH (2003) Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422: 433-438
3. Calderón Villalobos LI, Lee S, De Oliveira C, Ivetac A, Brandt W, Armitage L, Sheard LB, Tan X, Parry G, Mao H, et al (2012) A combinatorial TIR1/AFB-Aux/IAA co-receptor system for differential sensing of auxin. Nat Chem Biol 8: 477-485
4. Callis J (2014) The ubiquitination machinery of the ubiquitin system. Arabidopsis Book 12: e0174
5. Chang L, Barford D (2014) Insights into the anaphase-promoting complex: a molecular machine that regulates mitosis. Curr Opin Struct Biol 29: 1-9
6. Cheng F, Liu S, Wu J, Fang L, Sun S, Liu B, Li P, Hua W, Wang X (2011) BRAD, the genetics and genomics database for Brassica plants. BMC Plant Biol 11: 136
7. Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743
8. Del Bianco M, Kepinski S (2011) Context, specificity, and self-organization in auxin response. Cold Spring Harb Perspect Biol 3: a001578
9. De Smet I (2012) Lateral root initiation: one step at a time. New Phytol 193: 867-873
10. Dharmasiri N, Dharmasiri S, Estelle M (2005a) The F-box protein TIR1 is an auxin receptor. Nature 435: 441-445
11. Dharmasiri N, Dharmasiri S, Weijers D, Lechner E, Yamada M, Hobbie L, Ehrismann JS, Jürgens G, Estelle M (2005b) Plant development is regulated by a family of auxin receptor F box proteins. Dev Cell 9: 109-119
12. Dinesh DC, Kovermann M, Gopalswamy M, Hellmuth A, Calderón Villalobos LI, Lilie H, Balbach J, Abel S (2015) Solution structure of the PsIAA4 oligomerization domain reveals interaction modes for transcription factors in early auxin response. Proc Natl Acad Sci USA 112: 6230-6235
13. Dreher KA, Brown J, Saw RE, Callis J (2006) The Arabidopsis Aux/IAA protein family has diversified in degradation and auxin responsiveness. Plant Cell 18: 699-714
14. Gibson DG, Young L, Chuang RY, Venter JC, Hutchison III CA, Smith HO (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods 6: 343-345
15. Gietz RD, Woods RA (2002) Transformation of yeast by lithium acetate/ single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol 350: 87-96
16. Gilkerson J, Kelley DR, Tam R, Estelle M, Callis J (2015) Lysine residues are not required for proteasome-mediated proteolysis of the Auxin/ indole acidic acid protein IAA1. Plant Physiol 168: 708-720
17. Gray WM, Kepinski S, Rouse D, Leyser O, Estelle M (2001) Auxin regulates SCF(TIR1)-dependent degradation of AUX/IAA proteins. Nature 414: 271-276
18. Guseman JM, Hellmuth A, Lanctot A, Feldman TP, Moss BL, Klavins E, Calderón Villalobos LI, Nemhauser JL (2015) Auxin-induced degradation dynamics set the pace for lateral root development. Development 142: 905-909
19. Han M, Park Y, Kim I, Kim EH, Yu TK, Rhee S, Suh JY (2015) Correction for Han et al., Structural basis for the auxin-induced transcriptional regulation by Aux/IAA17. Proc Natl Acad Sci USA 112: E602
20. Havens KA, Guseman JM, Jang SS, Pierre-Jerome E, Bolten N, Klavins E, Nemhauser JL (2012) A synthetic approach reveals extensive tunability of auxin signaling. Plant Physiol 160: 135-142
21. Hua Z, Vierstra RD (2011) The cullin-RING ubiquitin-protein ligases. Annu Rev Plant Biol 62: 299-334
22. Kepinski S, Leyser O (2005) The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature 435: 446-451
23. Komander D, Rape M (2012) The ubiquitin code. Annu Rev Biochem 81: 203-229
24. Korasick DA, Chatterjee S, Tonelli M, Dashti H, Lee SG, Westfall CS, Fulton DB, Andreotti AH, Amarasinghe GK, Strader LC, et al. (2015) Defining a Two-pronged Structural Model for PB1 (Phox/Bem1p) Domain Interaction in Plant Auxin Responses. J Biol Chem 290: 12868-12878
25. Korasick DA, Westfall CS, Lee SG, Nanao MH, Dumas R, Hagen G, Guilfoyle TJ, Jez JM, Strader LC (2014) Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression. Proc Natl Acad Sci USA 111: 5427-5432
26. Lau S, Jürgens G, De Smet I (2008) The evolving complexity of the auxin pathway. Plant Cell 20: 1738-1746
27. Maraschin Fdos S, Memelink J, Offringa R (2009) Auxin-induced, SCF (TIR1)-mediated poly-ubiquitination marks AUX/IAA proteins for degradation. Plant J 59: 100-109
28. Nanao MH, Vinos-Poyo T, Brunoud G, Thévenon E, Mazzoleni M, Mast D, Lainé S, Wang S, Hagen G, Li H, et al (2014) Structural basis for oligomerization of auxin transcriptional regulators. Nat Commun 5: 3617
29. Nishimura K, Fukagawa T, Takisawa H, Kakimoto T, Kanemaki M (2009) An auxin-based degron system for the rapid depletion of proteins in nonplant cells. Nat Methods 6: 917-922
30. Overvoorde PJ, Okushima Y, Alonso JM, Chan A, Chang C, Ecker JR, Hughes B, Liu A, Onodera C, Quach H, et al (2005) Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana. Plant Cell 17: 3282-3300
31. Pierre-Jerome E, Jang SS, Havens KA, Nemhauser JL, Klavins E (2014) Recapitulation of the forward nuclear auxin response pathway in yeast. Proc Natl Acad Sci USA 111: 9407-9412
32. Pierre-Jerome E, Moss BL, Nemhauser JL (2013) Tuning the auxin transcriptional response. J Exp Bot 64: 2557-2563
33. Prigge MJ, Lavy M, Ashton NW, Estelle M (2010) Physcomitrella patens auxin-resistant mutants affect conserved elements of an auxin-signaling pathway. Curr Biol 20: 1907-1912
34. Ramos JA, Zenser N, Leyser O, Callis J (2001) Rapid degradation of auxin/indoleacetic acid proteins requires conserved amino acids of domain II and is proteasome dependent. Plant Cell 13: 2349-2360
35. Rogg LE, Lasswell J, Bartel B (2001) A gain-of-function mutation in IAA28 suppresses lateral root development. Plant Cell 13: 465-480
36. Tan X, Calderón-Villalobos LI, Sharon M, Zheng C, Robinson CV, Estelle M, Zheng N (2007) Mechanism of auxin perception by the TIR1 ubiquitin ligase. Nature 446: 640-645
37. Tiwari SB, Hagen G, Guilfoyle TJ (2004) Aux/IAA proteins contain a potent transcriptional repression domain. Plant Cell 16: 533-543
38. Tiwari SB, Wang XJ, Hagen G, Guilfoyle TJ (2001) AUX/IAA proteins are active repressors, and their stability and activity are modulated by auxin. Plant Cell 13: 2809-2822
39. Ulmasov T, Murfett J, Hagen G, Guilfoyle TJ (1997) Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. Plant Cell 9: 1963-1971
40. Wen R, Wang S, Xiang D, Venglat P, Shi X, Zang Y, Datla R, Xiao W, Wang H (2014) UBC13, an E2 enzyme for Lys63-linked ubiquitination, functions in root development by affecting auxin signaling and Aux/IAA protein stability. Plant J 80: 424-436
41. Williamson A, Banerjee S, Zhu X, Philipp I, Iavarone AT, Rape M (2011) Regulation of ubiquitin chain initiation to control the timing of substrate degradation. Mol Cell 42: 744-757
42. Worley CK, Zenser N, Ramos J, Rouse D, Leyser O, Theologis A, Callis J (2000) Degradation of Aux/IAA proteins is essential for normal auxin signalling. Plant J 21: 553-562
43. Yu H, Moss BL, Jang SS, Prigge M, Klavins E, Nemhauser JL, Estelle M (2013) Mutations in the TIR1 auxin receptor that increase affinity for auxin/indole-3-acetic acid proteins result in auxin hypersensitivity. Plant Physiol 162: 295-303
44. Zenser N, Ellsmore A, Leasure C, Callis J (2001) Auxin modulates the degradation rate of Aux/IAA proteins. Proc Natl Acad Sci USA 98: 11795-11800