Getting a grasp on domain III/IV responsible for Auxin Response Factor-IAA protein interactions

Plant Science

Volumn 190, Issue , 2012, Pages 82-88

  Guilfoyle, Tom J ^a   Hagen, Gretchen ^a  

^a University of Missouri   (United States)

Author keywords

Grasp fold; ARF; Auxin; Domain III IV; IAA protein; PB1 domain

Indexed keywords

TRANSCRIPTION FACTOR; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; CHEMISTRY; METABOLISM; MOLECULAR GENETICS; PLANT CELL; PROTEIN BINDING; PROTEIN TERTIARY STRUCTURE; REVIEW; STRUCTURE ACTIVITY RELATION;

AMINO ACID SEQUENCE; MOLECULAR SEQUENCE DATA; PLANT CELLS; PLANT PROTEINS; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; STRUCTURE-ACTIVITY RELATIONSHIP; TRANSCRIPTION FACTORS;

EID: 84860323198     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2012.04.003     Document Type: Review

References (58)

1. Guilfoyle T.J., Ulmasov T., Hagen G. The ARF family of transcription factors and their role in plant hormone responsive transcription. Cellular and Molecular Life Sciences 1998, 54:619-627.
2. Hagen G., Guilfoyle T.J. Auxin-responsive gene expression: genes, promoters, and regulatory factors. Plant Molecular Biology 2002, 49:373-385.
3. Guilfoyle T.J., Hagen G. Auxin response factors. Current Opinion in Plant Biology 2007, 10:453-460.
4. Chapman E.J., Estelle M. Mechanism of auxin-regulated gene expression in plants. Annual Review of Genetics 2009, 43:265-285.
5. Ulmasov T., Hagen G., Guilfoyle T.J. Activation and repression of transcription by auxin response factors. Proceedings of the National Academy of Sciences of the United States of America 1999, 96:5844-5849.
6. Tiwari S.B., Hagen G., Guilfoyle T. The roles of auxin response factor domains in auxin-responsive transcription. Plant Cell 2003, 15:533-543.
7. Abel S., Oeller P.W., Theologis A. Early auxin-induced genes encode short-lived nuclear proteins. Proceedings of the National Academy of Sciences of the United States of America 1994, 91:326-330.
8. Ulmasov T., Hagen G., Guilfoyle T.J. ARF1, a transcription factor that binds auxin response elements. Science 1997, 276:1865-1868.
9. Ulmasov T., Murfett J., Hagen G., Guilfoyle T.J. Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. Plant Cell 1997, 9:1963-1971.
10. Abel S., Nguyen M.D., Theologis A. The PS-IAA4/5-like family of early auxin-inducible mRNAs in Arabidopsis thaliana. Journal of Molecular Biology 1995, 251:533-549.
11. Kim J., Harter K., Theologis A. Protein-protein interactions among the Aux/IAA proteins. Proceedings of the National Academy of Sciences of the United States of America 1997, 94:11786-11791.
12. Remington D.L., Vision T.J., Guilfoyle T.J., Reed J.W. Contrasting modes of diversification in the Aux/IAA and ARF gene families. Plant Physiology 2004, 135:1738-1752.
13. De Rybel B., Vassileva V., Parizot B., Demeulenaere M., Grunewald W., Audenaert D., Van Campenhout J., Overvoorde P., Jansen L., Vanneste S., Möller B., Wilson M., Holman T., Van Isterdael G., Brunoud G., Vuylsteke M., Vernoux T., De Veylder L., Inzé D., Weijers D., Bennett M.J., Beeckman T. A novel Aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity. Current Biology 2010, 20:1697-1706.
14. Fukaki H., Nakao Y., Okushima Y., Theologis A., Tasaka M. Tissue-specific expression of stabilized SOLITARY-ROOT/IAA14 alters lateral root development in Arabidopsis. Plant Journal 2005, 44:382-395.
15. Hamann T., Benkova E., Baurle I., Kientz M., Jurgens G. The Arabidopsis BODENLOS gene encodes an auxin response protein inhibiting MONOPTEROS-mediated embryo patterning. Genes and Development 2002, 16:1610-1615.
16. Hardtke C.S., Ckurshumova W., Vidaurre D.P., Singh S.A., Stamatiou G., Tiwari S.B., Hagen G., Guilfoyle T.J., Berleth T. Overlapping and non-redundant functions of the Arabidopsis auxin response factors MONOPTEROS and NONPHOTOTROPIC HYPOCOTYL 4. Development 2004, 131:1089-1100.
17. Ouellet F., Overvoorde P.J., Theologis A. IAA17/AXR3: biochemical insight into an auxin mutant phenotype. Plant Cell 2001, 13:829-841.
18. Robles L.M., Deslauriers S.D., Alvarez A.A., Larsen P.B. A loss-of-function mutation in the nucleoporin AtNUP160 indicates that normal auxin signalling is required for a proper ethylene response in Arabidopsis. Journal of Experimental Botany 2012.
19. Shen C., Wang S., Bai Y., Wu Y., Zhang S., Chen M., Guilfoyle T.J., Wu P., Qi Y. Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.). Journal of Experimental Botany 2010, 61(2010):3971-3981.
20. Song Y., You J., Xiong L. Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis. Plant Molecular Biology 2009, 70:297-309.
21. Szemenyei H., Hannon M., Long J.A. TOPLESS mediates auxin-dependent transcriptional repression during Arabidopsis embryogenesis. Science 2008, 319:1384-1386.
22. Tatematsu K., Kumagai S., Muto H., Sato A., Watahiki M.K., Harper R.M., Liscum E., Yamamoto K.T. MASSUGU2 encodes Aux/IAA19, an auxin-regulated protein that functions together with the transcriptional activator NPH4/ARF7 to regulate differential growth responses of hypocotyl and formation of lateral roots in Arabidopsis thaliana. Plant Cell 2004, 16:379-393.
23. Uehara T., Okushima Y., Mimura T., Tasaka M., Fukaki H. Domain II mutations in CRANE/IAA18 suppress lateral root formation and affect shoot development in Arabidopsis thaliana. Plant and Cell Physiology 2008, 49:1025-1038.
24. Vernoux T., Brunoud G., Farcot E., Morin V., Van den Daele H., Legrand J., Oliva M., Das P., Larrieu A., Wells D., Guédon Y., Armitage L., Picard F., Guyomarc'h S., Cellier C., Parry G., Koumproglou R.J., Doonan H., Estelle M., Godin C., Kepinski S., Bennett M., De Veylder L., Traas J. The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Molecular Systems Biology 2011, 7:508.
25. Weijers D., Benkova E., Jäger K.E., Schlereth A., Hamann T., Kientz M., Wilmoth J.C., Reed J.W., Jürgens G. Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators. EMBO Journal 2005, 24:1874-1885.
26. Weijers D., Schlereth A., Ehrismann J.S., Schwank G., Kientz M., Jürgens G. Auxin triggers transient local signaling for cell specification in Arabidopsis embryogenesis. Developmental Cell 2006, 10:265-270.
27. Morgan K.E., Zarembinski T.I., Theologis A., Abel S. Biochemical characterization of recombinant polypeptides corresponding to the predicted βαα fold in Aux/IAA proteins. FEBS Letters 1999, 454:283-287.
28. Shin R., Burch A.Y., Huppert K.A., Tiwari S.B., Murphy A.S., Guilfoyle T.J., Schachtman D.P. The Arabidopsis transcription factor Myb77 modulates auxin signal transduction. Plant Cell 2007, 19:2440-2453.
29. Li J.F., Jürgens G., De Smet I., McCormack M. Large-scale protein-protein interaction analysis in Arabidopsis mesophyll protoplasts by split firefly luciferase complementation. PLoS One 2011, 6:e27364.
30. Muto H., Nagao I., Demura T., Fukuda H., Kinjo M., Yamamoto K.T. Fluorescence cross-correlation analyses of the molecular interaction between an Aux/IAA protein, MSG2/IAA19, and protein-protein interaction domains of auxin response factors of arabidopsis expressed in HeLa cells. Plant and Cell Physiology 2006, 47:1095-1101.
31. Rademacher E.H., Lokerse A.S., Schlereth A., Llavata-Peris C.I., Bayer M., Kientz M., Freire Rios A., Borst J.W., Lukowitz W., Jürgens G., Weijers D. Different auxin response machineries control distinct cell fates in the early plant embryo. Developmental Cell 2012, 211-222.
32. Möller B., Weijers D. Auxin control of embryo patterning. Cold Spring Harbor Perspectives in Biology 2009, 1:a001545.
33. Péret B., De Rybel B., Casimiro I., Benková E., Swarup R., Laplaze L., Beeckman T., Bennett M.J. Arabidopsis lateral root development: an emerging story. Trends in Plant Science 2009, 14:399-408.
34. Knox K., Grierson C.S., Leyser O. AXR3 and SHY2 interact to regulate root hair development. Development 2003, 130:5769-5777.
35. Muto H., Watahiki M.K., Nakamoto D., Kinjo M., Yamamoto K.T. Specificity and similarity of functions of the Aux/IAA genes in auxin signaling of Arabidopsis revealed by promoter-exchange experiments among MSG2/IAA19, AXR2/IAA7, and SLR/IAA14. Plant Physiology 2007, 144:187-196.
36. Li H., Tiwari S.B., Hagen G., Guilfoyle T.J. Identical amino acid substitutions in the repression domain of AUX/IAA proteins have contrasting effects on auxin signaling. Plant Physiology 2011, 155:1252-1263.
37. Dreher K.A., Brown J., Saw R.E., Callis J. The Arabidopsis Aux/IAA protein family has diversified in degradation and auxin responsiveness. Plant Cell 2006, 18:699-714.
38. Tiwari S.B., Wang X.J., Hagen G., Guilfoyle T.J. AUX/IAA proteins are active repressors, and their stability and activity are modulated by auxin. Plant Cell 2001, 13:2809-2822.
39. Bargmann B.O., Birnbaum K.D. Positive fluorescent selection permits precise, rapid, and in-depth overexpression analysis in plant protoplasts. Plant Physiology 2009, 149:1231-1239.
40. Wang S., Tiwari S.B., Hagen G., Guilfoyle T.J. AUXIN RESPONSE FACTOR7 restores the expression of auxin-responsive genes in mutant Arabidopsis leaf mesophyll protoplasts. Plant Cell 2005, 17:1979-1993.
41. Lau S., De Smet I., Kolb M., Meinhardt H., Jürgens G. Auxin triggers a genetic switch. Nature Cell Biology 2011, 13:611-615.
42. Krogan N.T., Ckurshumova W., Marcos D., Caragea A., Berleth T. Deletion of MP/ARF5 domains III and IV reveals a requirement for Aux/IAA regulation in Arabidopsis leaf vascular patterning. New Phytologist 2012, 10.1111/j.1469-8137.2012.04064.x.
43. Garrett J.J.T., Meents M.J., Blackshaw M.T., Blackshaw L.C., Hou H., Styranko D.M., Kohalmi S.E., Schlutz E.A. A novel, semidominant allele of MONOPTEROS provides insight into leaf initiation and vein pattern formation. Planta 2012, 10.1007/s00425-012-1607-0.
44. Rouse D., Mackay P., Stirnberg P., Estelle M., Leyser O. Changes in auxin response from mutations in an AUX/IAA gene. Science 1998, 279:1371-1373.
45. Nagpal P., Walker L.M., Young J.C., Sonawala A., Timpte C., Estelle M., Reed J.W. AXR2 encodes a member of the Aux/IAA protein family. Plant Physiology 2000, 123:563-574.
46. Carranco R., Espinosa J.M., Prieto-Dapena P., Almoguera C., Jordano J. Repression by an auxin/indole acetic acid protein connects auxin signaling with heat shock factor-mediated seed longevity. Proceedings of the National Academy of Sciences of the United States of America 2010, 107:21908-21913.
47. Scacchi E., Salinas P., Gujas B., Santuari L., Krogan N., Ragni L., Berleth T., Hardtke C.S. Spatio-temporal sequence of cross-regulatory events in root meristem growth. Proceedings of the National Academy of Sciences of the United States of America 2010, 107:22734-22739.
48. Varaud E., Brioudes F., Szecsi J., Leroux J., Brown S., Perrot-Rechenmann C. AUXIN RESPONSE FACTOR8 regulates Arabidopsis petal growth by interacting with the bHLH transcription factor BIGPETALp. Plant Cell 2011, 23:973-983.
49. Padmanabhan M.S., Goregaoker S.P., Golem S., Shiferaw H., Culver J.N. Interaction of the tobacco mosaic virus replicase protein with the Aux/IAA protein PAP1/IAA26 is associated with disease development. Journal of Virology 2005, 79:2549-2558.
50. Padmanabhan M.S., Shiferaw H., Culver J.N. The tobacco mosaic virus replicase protein disrupts the localization and function of interacting Aux/IAA proteins. Molecular Plant-Microbe Interactions 2006, 19:864-873.
51. Kelley L.A., Sternberg M.J.E. Protein structure prediction on the web: a case study using the Phyre server. Nature Protocols 2009, 4:363-371.
52. Moscat J., Diaz-Meco M.T., Albert A., Campuzano S. Cell signaling and function organized by PB1 domain interactions. Molecular Cell 2006, 23:631-640.
53. Sumimoto H., Kamakura S., Ito T. Structure and function of the PB1 domain, a protein interaction module conserved in animals, fungi, amoebas, and plants. Science's STKE 2007, 401:re6.
54. Burroughs A.M., Balaji S., Iyer L.M., Aravind L. Small but versatile: the extraordinary functional and structural diversity of the β-grasp fold. Biology Direct 2007, 2:18.
55. Ponting C.P., Ito T., Moscat J., Diaz-Meco M.T., Inagaki F., Sumimoto H. OPR, PC and AID: all in the PB1 family. Trends in Biochemical Sciences 2002, 27:10.
56. Noda Y., Kohjima M., Izaki T., Ota K., Yoshinaga S., Inagaki F., Ito T., Sumimoto H. Molecular recognition in dimerization between PB1 domains. Journal of Biological Chemistry 2003, 278:43516-43524.
57. Saio T., Yokochi M., Inagaki F. The NMR structure of the p62 PB1 domain, a key protein in autophagy and NF-kappaB signaling pathway. Journal of Biomolecular NMR 2009, 45:335-341.
58. Wilson M.L., Gill D.J., Perisic O., Quinn M.T., Wilson R.L. PB1 domain-mediated heterodimerization in NADPH oxidase and signaling complexes of atypical protein kinase C with Par6 and p62. Molecular Cell 2003, 12:39-50.