메뉴 건너뛰기




Volumn 117, Issue 6, 2016, Pages 393-399

On the importance of skewed offspring distributions and background selection in virus population genetics

Author keywords

[No Author keywords available]

Indexed keywords

GENETIC ANALYSIS; GENETIC VARIATION; MUTATION; NATURAL SELECTION; POPULATION BOTTLENECK; POPULATION DISTRIBUTION; POPULATION SIZE;

EID: 84988624316     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2016.58     Document Type: Review
Times cited : (46)

References (83)
  • 1
    • 84889677831 scopus 로고    scopus 로고
    • Mutational and fitness landscapes of an RNA virus revealed through population sequencing
    • Acevedo A, Brodsky L, Andino R (2014). Mutational and fitness landscapes of an RNA virus revealed through population sequencing. Nature 505: 686-690.
    • (2014) Nature , vol.505 , pp. 686-690
    • Acevedo, A.1    Brodsky, L.2    Andino, R.3
  • 3
    • 84895727363 scopus 로고    scopus 로고
    • A Bayesian mcmc approach to assess the complete distribution of fitness effects of new mutations: Uncovering the potential for adaptive walks in challenging environments
    • Bank C, Hietpas RT, Wong A, Bolon DN, Jensen JD (2014). A Bayesian MCMC approach to assess the complete distribution of fitness effects of new mutations: uncovering the potential for adaptive walks in challenging environments. Genetics 196: 841-852.
    • (2014) Genetics , vol.196 , pp. 841-852
    • Bank, C.1    Hietpas, R.T.2    Wong, A.3    Bolon, D.N.4    Jensen, J.D.5
  • 4
    • 41849085854 scopus 로고    scopus 로고
    • Asymptotics of the allele frequency spectrum associated with the bolthausen-sznitmzn coalescent
    • Basdevant A, Goldschmidt C (2008). Asymptotics of the allele frequency spectrum associated with the Bolthausen-Sznitmzn coalescent. Electron J Probab 13: 486-512.
    • (2008) Electron J Probab , vol.13 , pp. 486-512
    • Basdevant, A.1    Goldschmidt, C.2
  • 5
    • 0026529344 scopus 로고
    • Levels of naturally occurring DNA polymorphism correlate with recombination rates in d. Melanogaster
    • Begun DJ, Aquadro CF (1992). Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356: 519-520.
    • (1992) Nature , vol.356 , pp. 519-520
    • Begun, D.J.1    Aquadro, C.F.2
  • 6
    • 37449025213 scopus 로고    scopus 로고
    • Beta-coalescents and continuous stable random trees
    • Berestycki J, Berestycki N, Schweinsberg J (2007). Beta-coalescents and continuous stable random trees. Ann Probab 35: 1835-1887.
    • (2007) Ann Probab , vol.35 , pp. 1835-1887
    • Berestycki, J.1    Berestycki, N.2    Schweinsberg, J.3
  • 8
    • 84952636503 scopus 로고    scopus 로고
    • Distribution of mutational fitness effects and of epistasis in the 5' untranslated region of a plant RNA virus
    • Bernet GP, Elena SF (2015). Distribution of mutational fitness effects and of epistasis in the 5' untranslated region of a plant RNA virus. BMC Evol Biol 15: 274-287.
    • (2015) BMC Evol Biol , vol.15 , pp. 274-287
    • Bernet, G.P.1    Elena, S.F.2
  • 9
    • 45049083076 scopus 로고    scopus 로고
    • Computing likelihoods for coalescents with multiple collisions in the infinitely many sites model
    • Birkner M, Blath J (2008). Computing likelihoods for coalescents with multiple collisions in the infinitely many sites model. J Math Biol 57: 435-465.
    • (2008) J Math Biol , vol.57 , pp. 435-465
    • Birkner, M.1    Blath, J.2
  • 10
    • 84871723554 scopus 로고    scopus 로고
    • An ancestral recombination graph for diploid populations with skewed offspring distribution
    • Birkner M, Blath J, Eldon B (2013). An ancestral recombination graph for diploid populations with skewed offspring distribution. Genetics 193: 255-290.
    • (2013) Genetics , vol.193 , pp. 255-290
    • Birkner, M.1    Blath, J.2    Eldon, B.3
  • 11
  • 12
    • 0010117449 scopus 로고    scopus 로고
    • On ruelle's probability cascades and an abstract cavity method
    • Bolthausen E, Snznitman AS (1998). On Ruelle's probability cascades and an abstract cavity method. Commun Math Phys 197: 247-276.
    • (1998) Commun Math Phys , vol.197 , pp. 247-276
    • Bolthausen, E.1    Snznitman, A.S.2
  • 13
    • 0142088791 scopus 로고    scopus 로고
    • Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses
    • Chare ER, Gould EA, Holmes EC (2003). Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses. J Gen Virol 84: 2691-2703.
    • (2003) J Gen Virol , vol.84 , pp. 2691-2703
    • Chare, E.R.1    Gould, E.A.2    Holmes, E.C.3
  • 14
    • 0027305597 scopus 로고
    • The effect of deleterious mutations on neutral molecular variation
    • Charlesworth B, Morgan MT, Charlesworth D (1993). The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303.
    • (1993) Genetics , vol.134 , pp. 1289-1303
    • Charlesworth, B.1    Morgan, M.T.2    Charlesworth, D.3
  • 15
    • 84903452150 scopus 로고    scopus 로고
    • Background selection as a baseline for nucleotide variation across the drosophila genome
    • Comeron JM (2014). Background selection as a baseline for nucleotide variation across the Drosophila genome. PLoS Genet 10: e1004434.
    • (2014) PLoS Genet , vol.10 , pp. e1004434
    • Comeron, J.M.1
  • 17
    • 37249005219 scopus 로고    scopus 로고
    • On recombination-induced multiple and simultaneous coalescent events
    • Davies JL, Simancík F, Lyngsø R, Mailund T, Hein J (2007). On recombination-induced multiple and simultaneous coalescent events. Genetics 177: 2151-2160.
    • (2007) Genetics , vol.177 , pp. 2151-2160
    • Davies, J.L.1    Simancík, F.2    Lyngsø, R.3    Mailund, T.4    Hein, J.5
  • 18
    • 79960637770 scopus 로고    scopus 로고
    • Generalized population models and the nature of genetic drift
    • Der R, Epstein CL, Plotkin JB (2011). Generalized population models and the nature of genetic drift. Theor Popul Biol 80: 80-99.
    • (2011) Theor Popul Biol , vol.80 , pp. 80-99
    • Der, R.1    Epstein, C.L.2    Plotkin, J.B.3
  • 19
    • 0033243134 scopus 로고    scopus 로고
    • Particle representations for measure-valued population models
    • Donnelly P, Kurtz TG (1999). Particle representations for measure-valued population models. Ann Probab 27: 166-205.
    • (1999) Ann Probab , vol.27 , pp. 166-205
    • Donnelly, P.1    Kurtz, T.G.2
  • 20
    • 84925002635 scopus 로고    scopus 로고
    • Can the site-frequency spectrum distinguish exponential population growth from multiple-merger coalescents?
    • Eldon B, Birkner M, Blath J, Freund F (2015). Can the site-frequency spectrum distinguish exponential population growth from multiple-merger coalescents? Genetics 199: 841-856.
    • (2015) Genetics , vol.199 , pp. 841-856
    • Eldon, B.1    Birkner, M.2    Blath, J.3    Freund, F.4
  • 21
    • 84863882958 scopus 로고    scopus 로고
    • Multiple merger gene genealogies in two-species: Monophyly, paraphyly, and polyphyly for two examples of lambda coalescents
    • Eldon B, Degnan JH (2012). Multiple merger gene genealogies in two-species: Monophyly, paraphyly, and polyphyly for two examples of Lambda coalescents. Theor Popul Biol 82: 117-130.
    • (2012) Theor Popul Biol , vol.82 , pp. 117-130
    • Eldon, B.1    Degnan, J.H.2
  • 22
    • 33646168295 scopus 로고    scopus 로고
    • Coalesent processes when the distribution of offspring number among individuals is highly skewed
    • Eldon B, Wakeley J (2006). Coalesent processes when the distribution of offspring number among individuals is highly skewed. Genetics 172: 2621-2633.
    • (2006) Genetics , vol.172 , pp. 2621-2633
    • Eldon, B.1    Wakeley, J.2
  • 23
    • 45149105927 scopus 로고    scopus 로고
    • Linkage disequlibrium under skewed offspring distribution among individuals in a population
    • Eldon B, Wakeley J (2008). Linkage disequlibrium under skewed offspring distribution among individuals in a population. Genetics 178: 1517-1532.
    • (2008) Genetics , vol.178 , pp. 1517-1532
    • Eldon, B.1    Wakeley, J.2
  • 24
    • 62449248724 scopus 로고    scopus 로고
    • Coalescence times and fst under a skewed offspring distirbution among individuals in a population
    • Eldon B, Wakeley J (2009). Coalescence times and Fst under a skewed offspring distirbution among individuals in a population. Genetics 181: 615-629.
    • (2009) Genetics , vol.181 , pp. 615-629
    • Eldon, B.1    Wakeley, J.2
  • 25
    • 0003809330 scopus 로고
    • Testing the generalized neutrality hypothesis
    • Ewens WJ (1979). Testing the generalized neutrality hypothesis. Theor Popul Biol 15: 205-216.
    • (1979) Theor Popul Biol , vol.15 , pp. 205-216
    • Ewens, W.J.1
  • 26
    • 84954077710 scopus 로고    scopus 로고
    • The consequences of not accounting for background selection in demographic inference
    • Ewing GB, Jensen JD (2016). The consequences of not accounting for background selection in demographic inference. Mol Ecol 25: 135-141.
    • (2016) Mol Ecol , vol.25 , pp. 135-141
    • Ewing, G.B.1    Jensen, J.D.2
  • 27
    • 34447546660 scopus 로고    scopus 로고
    • The distirbution of fitness effects of new mutations
    • Eyre-Walker A, Keightley PD (2007). The distirbution of fitness effects of new mutations. Nat Rev Genet 8: 610-618.
    • (2007) Nat Rev Genet , vol.8 , pp. 610-618
    • Eyre-Walker, A.1    Keightley, P.D.2
  • 28
    • 84979911644 scopus 로고    scopus 로고
    • An approximate markov model for the wright-fisher diffusion and its application to time series data
    • Ferrer-Admetlla A, Leuenberger C, Jensen JD, Wegmann D (2016). An approximate Markov model for the Wright-Fisher diffusion and its application to time series data. Genetics 203: 831-846.
    • (2016) Genetics , vol.203 , pp. 831-846
    • Ferrer-Admetlla, A.1    Leuenberger, C.2    Jensen, J.D.3    Wegmann, D.4
  • 29
    • 84901729595 scopus 로고    scopus 로고
    • Influenza virus drug resistance: A time-sampled population genetic perspective
    • Foll M, Poh Y, Renzette N, Ferrer-Admetlla A, Bank C, Shim H et al. (2014). Influenza virus drug resistance: a time-sampled population genetic perspective. PLoS Genet 10: e1004185.
    • (2014) PLoS Genet , vol.10 , pp. e1004185
    • Foll, M.1    Poh, Y.2    Renzette, N.3    Ferrer-Admetlla, A.4    Bank, C.5    Shim, H.6
  • 30
    • 84923108157 scopus 로고    scopus 로고
    • Wfabc: A wright-fisher abc-based approach for inferring effective population sizes and selection coefficients from time-sampled data
    • Foll M, Shim H, Jensen JD (2015). WFABC: a Wright-Fisher ABC-based approach for inferring effective population sizes and selection coefficients from time-sampled data. Mol Ecol Resour 15: 87-98.
    • (2015) Mol Ecol Resour , vol.15 , pp. 87-98
    • Foll, M.1    Shim, H.2    Jensen, J.D.3
  • 32
    • 84867403054 scopus 로고    scopus 로고
    • Virus population bottlenecks during within-host progression and host-to-host transmission
    • Gutiérrez S, Michalakis Y, Blanc S (2012). VIrus population bottlenecks during within-host progression and host-to-host transmission. Curr Opin Virol 2: 546-555.
    • (2012) Curr Opin Virol , vol.2 , pp. 546-555
    • Gutiérrez, S.1    Michalakis, Y.2    Blanc, S.3
  • 33
    • 0002761623 scopus 로고
    • Does variance in reproductive success limit effective population sizes of marine organisms?
    • In Beaumont AR (ed. Chapman & Hall: London
    • Hedgecock D (1994a). Does variance in reproductive success limit effective population sizes of marine organisms? In: Beaumont AR (ed). Genetics and Evolution of Aquatic Organisms. Chapman & Hall: London. pp 122-133.
    • (1994) Genetics and Evolution of Aquatic Organisms , pp. 122-133
    • Hedgecock, D.1
  • 34
    • 0002044001 scopus 로고
    • Population genetics of marine organisms
    • Hedgecock D (1994b). Population genetics of marine organisms. US Globec News 6: 1-8.
    • (1994) US Globec News , vol.6 , pp. 1-8
    • Hedgecock, D.1
  • 35
    • 56649111423 scopus 로고    scopus 로고
    • A flexible forward simulator for populations subject to selection and demography
    • Hernandez R (2008). A flexible forward simulator for populations subject to selection and demography. Bioinformatics 24: 2786-2787.
    • (2008) Bioinformatics , vol.24 , pp. 2786-2787
    • Hernandez, R.1
  • 36
    • 0028846610 scopus 로고
    • Deleterious background selection with recombination
    • Hudson RR, Kaplan NL (1995). Deleterious background selection with recombination. Genetics 141: 1605-1617.
    • (1995) Genetics , vol.141 , pp. 1605-1617
    • Hudson, R.R.1    Kaplan, N.L.2
  • 37
    • 80051531736 scopus 로고    scopus 로고
    • Population genetics models with skewed fertilities: A forward and backward analysis
    • Huillet T, Möhle M (2011). Population genetics models with skewed fertilities: a forward and backward analysis. Stoch Models 27: 521-554.
    • (2011) Stoch Models , vol.27 , pp. 521-554
    • Huillet, T.1    Möhle, M.2
  • 38
    • 0347361666 scopus 로고    scopus 로고
    • Distinguishing the hitchhiking and background selection models
    • Innan H, Stephan W (2003). Distinguishing the hitchhiking and background selection models. Genetics 165: 2307-2312.
    • (2003) Genetics , vol.165 , pp. 2307-2312
    • Innan, H.1    Stephan, W.2
  • 39
    • 84958759356 scopus 로고    scopus 로고
    • A balance between inhibitor binding and substrate processing confers influenza drug resistance
    • Jiang L, Liu P, Bank C, Renzette N, Prachanronarong K, Yilmaz LS et al. (2016). A balance between inhibitor binding and substrate processing confers influenza drug resistance. J Mol Biol 428: 538-523.
    • (2016) J Mol Biol , vol.428 , pp. 523-538
    • Jiang, L.1    Liu, P.2    Bank, C.3    Renzette, N.4    Prachanronarong, K.5    Yilmaz, L.S.6
  • 40
    • 84994562298 scopus 로고    scopus 로고
    • A fitness bottleneck in HIV-1 transmission
    • Joseph SB, Swanstrom R (2015). A fitness bottleneck in HIV-1 transmission. Science 345: 136-173.
    • (2015) Science , vol.345 , pp. 136-173
    • Joseph, S.B.1    Swanstrom, R.2
  • 41
    • 0000977985 scopus 로고
    • The mutational load with epistatic gene interactions in fitness
    • Kimura M, Maruyama T (1966). The mutational load with epistatic gene interactions in fitness. Genetics 54: 1337-1351.
    • (1966) Genetics , vol.54 , pp. 1337-1351
    • Kimura, M.1    Maruyama, T.2
  • 43
    • 0004250845 scopus 로고    scopus 로고
    • Lippincott Williams & Wilkins: Philadelphia
    • Knipe DM, Howley PM (2007). Fields Virology Vol 1, Lippincott Williams & Wilkins: Philadelphia.
    • (2007) Fields Virology , vol.1
    • Knipe, D.M.1    Howley, P.M.2
  • 44
    • 84876406925 scopus 로고    scopus 로고
    • The role of mutational robustness in RNA virus evolution
    • Lauring AS, Frydman J, Andino R (2013). The role of mutational robustness in RNA virus evolution. Nat Rev Genet 11: 327-336.
    • (2013) Nat Rev Genet , vol.11 , pp. 327-336
    • Lauring, A.S.1    Frydman, J.2    Andino, R.3
  • 45
    • 84155170973 scopus 로고    scopus 로고
    • Joint analysis of demography and selection in poulation genetics: Where do we stand and where could we go?
    • Li J, Li H, Jakobsson M, Li S, Sjödin P, Lascoux M (2012). Joint analysis of demography and selection in poulation genetics: where do we stand and where could we go? Mol Ecol 21: 28-44.
    • (2012) Mol Ecol , vol.21 , pp. 28-44
    • Li, J.1    Li, H.2    Jakobsson, M.3    Li, S.4    Sjödin, P.5    Lascoux, M.6
  • 46
    • 84924574262 scopus 로고    scopus 로고
    • Genomic analysis of emerging pathogens: Methods, application and future trends
    • Li LM, Grassly NC, Fraser C (2014). Genomic analysis of emerging pathogens: methods, application and future trends. Genome Biol 15: 541-550.
    • (2014) Genome Biol , vol.15 , pp. 541-550
    • Li, L.M.1    Grassly, N.C.2    Fraser, C.3
  • 47
    • 84954069176 scopus 로고    scopus 로고
    • Methods to characterize selective sweeps using time serial samples: An ancient DNA perspective
    • Malaspinas A-S (2016). Methods to characterize selective sweeps using time serial samples: an ancient DNA perspective. Mol Ecol 25: 24-41.
    • (2016) Mol Ecol , vol.25 , pp. 24-41
    • Malaspinas, A.-S.1
  • 48
    • 84867176367 scopus 로고    scopus 로고
    • Estimating allele age and selection coefficient from time-serial data
    • Malaspinas A-S, Malaspinas O, Evans SN, Slatkin M (2012). Estimating allele age and selection coefficient from time-serial data. Genetics 192: 599-607.
    • (2012) Genetics , vol.192 , pp. 599-607
    • Malaspinas, A.-S.1    Malaspinas, O.2    Evans, S.N.3    Slatkin, M.4
  • 49
    • 0034099647 scopus 로고    scopus 로고
    • The effects of hill-Robertson interference between weakly selected mutations on patterns of molecular evoultion and variation
    • McVean GAT, Charlesworth B (2000). The effects of Hill-Robertson interference between weakly selected mutations on patterns of molecular evoultion and variation. Genetics 155: 929-944.
    • (2000) Genetics , vol.155 , pp. 929-944
    • McVean, G.A.T.1    Charlesworth, B.2
  • 50
    • 84881041428 scopus 로고    scopus 로고
    • Slim: Simulating evolution with selection and linkage
    • Messer PW (2013). SLiM: simulating evolution with selection and linkage. Genetics 194: 1037-1039.
    • (2013) Genetics , vol.194 , pp. 1037-1039
    • Messer, P.W.1
  • 51
    • 0035470867 scopus 로고    scopus 로고
    • A classification of coalescent processes for haploid exchangable population models
    • Möhle M, Sagitov S (2001). A classification of coalescent processes for haploid exchangable population models. Ann Probab 29: 1547-1562.
    • (2001) Ann Probab , vol.29 , pp. 1547-1562
    • Möhle, M.1    Sagitov, S.2
  • 52
    • 0037165969 scopus 로고    scopus 로고
    • Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level
    • Moore CB, John M, James IR, Christiansen FT, Witt CS, Mallal SA (2002). Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level. Science 296: 1439-1443.
    • (2002) Science , vol.296 , pp. 1439-1443
    • Moore, C.B.1    John, M.2    James, I.R.3    Christiansen, F.T.4    Witt, C.S.5    Mallal, S.A.6
  • 53
    • 84949558457 scopus 로고
    • Random processes in genetics
    • Moran PAP (1958). Random processes in genetics. Math Proc Camb Phil Soc 54: 60-71.
    • (1958) Math Proc Camb Phil Soc , vol.54 , pp. 60-71
    • Moran, P.A.P.1
  • 54
    • 84872201548 scopus 로고    scopus 로고
    • Genealogies of rapidly adapting populations
    • Neher RA, Hallatschek O (2013). Genealogies of rapidly adapting populations. Proc Natl Acad Sci USA 110: 437-442.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 437-442
    • Neher, R.A.1    Hallatschek, O.2
  • 55
    • 0031014102 scopus 로고    scopus 로고
    • The genealogy of samples in models with selection
    • Neuhauser C, Krone SM (1997). The genealogy of samples in models with selection. Genetics 145: 519-534.
    • (1997) Genetics , vol.145 , pp. 519-534
    • Neuhauser, C.1    Krone, S.M.2
  • 56
    • 0030790185 scopus 로고    scopus 로고
    • Structured coalescent processes on different time scales
    • Nordborg M (1997). Structured coalescent processes on different time scales. Genetics 146: 1501-1514.
    • (1997) Genetics , vol.146 , pp. 1501-1514
    • Nordborg, M.1
  • 57
    • 0029962309 scopus 로고    scopus 로고
    • The effect of recombination on background selection
    • Nordborg M, Charlesworth B, Charlesworth D (1996). The effect of recombination on background selection. Gen Res 67: 159-174.
    • (1996) Gen Res , vol.67 , pp. 159-174
    • Nordborg, M.1    Charlesworth, B.2    Charlesworth, D.3
  • 58
    • 84896691480 scopus 로고    scopus 로고
    • Loss and recovery of genetic diversity in adapting populations of HIV
    • Pennings PS, Kryazhimskiy S, Wakeley J (2014). Loss and recovery of genetic diversity in adapting populations of HIV. PLoS Genet 10: e1004000.
    • (2014) PLoS Genet , vol.10 , pp. e1004000
    • Pennings, P.S.1    Kryazhimskiy, S.2    Wakeley, J.3
  • 59
    • 0033233681 scopus 로고    scopus 로고
    • Coalescents with multiple collisions
    • Pitman J (1999). Coalescents with multiple collisions. J Appl Probab 27: 1870-1902.
    • (1999) J Appl Probab , vol.27 , pp. 1870-1902
    • Pitman, J.1
  • 60
    • 84862980012 scopus 로고    scopus 로고
    • The bonobo genome compared with the chimpanzee and human genomes
    • Prüfer K, Munch K, Hellmann I, Akagi K, Miller JR, Walenz B et al. (2012). The bonobo genome compared with the chimpanzee and human genomes. Nature 486: 527-531.
    • (2012) Nature , vol.486 , pp. 527-531
    • Prüfer, K.1    Munch, K.2    Hellmann, I.3    Akagi, K.4    Miller, J.R.5    Walenz, B.6
  • 61
    • 67651100815 scopus 로고    scopus 로고
    • Evolutionary analysis of the dynamics of viral infectious disease
    • Pybus OG, Rambaut A (2009). Evolutionary analysis of the dynamics of viral infectious disease. Nat Rev Genet 10: 540-550.
    • (2009) Nat Rev Genet , vol.10 , pp. 540-550
    • Pybus, O.G.1    Rambaut, A.2
  • 62
    • 84884683917 scopus 로고    scopus 로고
    • Rapid intrahost evolution of human cytomegalovirus is shaped by demography and positive selection
    • Renzette N, Gibson L, Bhattacharjee B, Fisher D, Schleiss MR, Jensen JD et al. (2013). Rapid intrahost evolution of human cytomegalovirus is shaped by demography and positive selection. PLoS Genet 9: e1003735.
    • (2013) PLoS Genet , vol.9 , pp. e1003735
    • Renzette, N.1    Gibson, L.2    Bhattacharjee, B.3    Fisher, D.4    Schleiss, M.R.5    Jensen, J.D.6
  • 63
    • 84954077343 scopus 로고    scopus 로고
    • On the relative roles of background selection and geneic hitchhiking in shaping human cytometgalovirus genetic diversity
    • Renzette N, Kowalik TF, Jensen JD (2016). On the relative roles of background selection and geneic hitchhiking in shaping human cytometgalovirus genetic diversity. Mol Ecol 25: 403-413.
    • (2016) Mol Ecol , vol.25 , pp. 403-413
    • Renzette, N.1    Kowalik, T.F.2    Jensen, J.D.3
  • 64
    • 0033233843 scopus 로고    scopus 로고
    • The general coalescent with asynchronous mergers of ancestral lines
    • Sagitov S (1999). The general coalescent with asynchronous mergers of ancestral lines. J Appl Probab 36: 1116-1125.
    • (1999) J Appl Probab , vol.36 , pp. 1116-1125
    • Sagitov, S.1
  • 65
    • 77954324311 scopus 로고    scopus 로고
    • Mutational fitness effects in RNA and single-stranded DNA viruses: Common patterns revealed by site-directed mutagenesis studies
    • Sanjuán R (2010). Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studies. Phil Trans R Soc B 365: 1975-1982.
    • (2010) Phil Trans R Soc B , vol.365 , pp. 1975-1982
    • Sanjuán, R.1
  • 66
    • 84995270571 scopus 로고    scopus 로고
    • Fifteen to twenty percent of HIV substitution mutations are associated with recombination
    • Schlub TE, Grimm AJ, Smyth RP, Cromer D, Chopra A, Mallal S et al. (2014). Fifteen to twenty percent of HIV substitution mutations are associated with recombination. J Virol 88: 3837-3849.
    • (2014) J Virol , vol.88 , pp. 3837-3849
    • Schlub, T.E.1    Grimm, A.J.2    Smyth, R.P.3    Cromer, D.4    Chopra, A.5    Mallal, S.6
  • 67
    • 0001885968 scopus 로고    scopus 로고
    • Coalescents with simultaneous multiple collisions
    • Schweinsberg J (2000). Coalescents with simultaneous multiple collisions. Electron J Probab 5: 1-50.
    • (2000) Electron J Probab , vol.5 , pp. 1-50
    • Schweinsberg, J.1
  • 68
    • 0037843651 scopus 로고    scopus 로고
    • Coalescent processes obtained from supercritical galton-watson processes
    • Schweinsberg J (2003). Coalescent processes obtained from supercritical Galton-Watson processes. Stoch Proc Applicat 106: 107-139.
    • (2003) Stoch Proc Applicat , vol.106 , pp. 107-139
    • Schweinsberg, J.1
  • 69
    • 0029007685 scopus 로고
    • HIV transmission in sexual networks: An empirical analysis
    • Service SK, Blower SM (1995). HIV transmission in sexual networks: an empirical analysis. Proc R Soc Lond B Biol Sci 260: 237-244.
    • (1995) Proc R Soc Lond B Biol Sci , vol.260 , pp. 237-244
    • Service, S.K.1    Blower, S.M.2
  • 71
    • 84880698033 scopus 로고    scopus 로고
    • Analysis of DNA sequence variation within marine species using beta-coalescents
    • Steinrücken M, Birkner M, Blath J (2013). Analysis of DNA sequence variation within marine species using Beta-coalescents. Theor Popul Biol 87: 15-24.
    • (2013) Theor Popul Biol , vol.87 , pp. 15-24
    • Steinrücken, M.1    Birkner, M.2    Blath, J.3
  • 72
    • 84867152138 scopus 로고    scopus 로고
    • Clonal interference in the evolution of influenza
    • Strelkowa N, Lässig M (2012). Clonal interference in the evolution of influenza. Genetics 192: 671-682.
    • (2012) Genetics , vol.192 , pp. 671-682
    • Strelkowa, N.1    Lässig, M.2
  • 73
    • 62649128435 scopus 로고    scopus 로고
    • Coalescent processes in subdivided populations subject to recurrent mass extinctions
    • Taylor JE, Véber A (2009). Coalescent processes in subdivided populations subject to recurrent mass extinctions. Electron J Probab 14: 242-288.
    • (2009) Electron J Probab , vol.14 , pp. 242-288
    • Taylor, J.E.1    Véber, A.2
  • 74
    • 78650235515 scopus 로고    scopus 로고
    • Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease
    • Tebit DM, Arts EJ (2011). Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease. Lancet Infect Dis 11: 45-46.
    • (2011) Lancet Infect Dis , vol.11 , pp. 45-46
    • Tebit, D.M.1    Arts, E.J.2
  • 75
    • 84901481068 scopus 로고    scopus 로고
    • Coalescence 2.0: A multiple branching of recent theoretical developments and their applications
    • Tellier A, Lemaire C (2014). Coalescence 2.0: a multiple branching of recent theoretical developments and their applications. Mol Ecol 23: 2637-2652.
    • (2014) Mol Ecol , vol.23 , pp. 2637-2652
    • Tellier, A.1    Lemaire, C.2
  • 76
    • 84907968848 scopus 로고    scopus 로고
    • A c++ template library for efficient forward-time population genetic simulation of large populations
    • Thornton KR (2014). A C++ template library for efficient forward-time population genetic simulation of large populations. Genetics 198: 157-166.
    • (2014) Genetics , vol.198 , pp. 157-166
    • Thornton, K.R.1
  • 77
    • 0000085814 scopus 로고    scopus 로고
    • Genealogy and subpopulation differentiation under various models of population structure
    • Wilkinson-Herbots HM (1998). Genealogy and subpopulation differentiation under various models of population structure. J Math Biol 37: 535-585.
    • (1998) J Math Biol , vol.37 , pp. 535-585
    • Wilkinson-Herbots, H.M.1
  • 78
    • 0032979874 scopus 로고    scopus 로고
    • Using maximum likelihood to estimate population size from temporal change in allele frequencies
    • Williamson EG, Slatkin M (1999). Using maximum likelihood to estimate population size from temporal change in allele frequencies. Genetics 152: 755-761.
    • (1999) Genetics , vol.152 , pp. 755-761
    • Williamson, E.G.1    Slatkin, M.2
  • 79
    • 0001771498 scopus 로고
    • Evolution in mendelian populations
    • Wright S (1931). Evolution in Mendelian populations. Genetics 16: 97-159.
    • (1931) Genetics , vol.16 , pp. 97-159
    • Wright, S.1
  • 80
    • 84875759191 scopus 로고    scopus 로고
    • A coalescent model of background selection with recombination, demography and variation in selection coefficients
    • Zeng K (2013). A coalescent model of background selection with recombination, demography and variation in selection coefficients. Heredity 100: 363-371.
    • (2013) Heredity , vol.100 , pp. 363-371
    • Zeng, K.1
  • 81
    • 80052650680 scopus 로고    scopus 로고
    • The joint effects of background selection and genetic recombination on local gene genealogies
    • Zeng K, Charlesworth B (2011). The joint effects of background selection and genetic recombination on local gene genealogies. Genetics 189: 251-266.
    • (2011) Genetics , vol.189 , pp. 251-266
    • Zeng, K.1    Charlesworth, B.2
  • 82
    • 84941631015 scopus 로고    scopus 로고
    • Hybrid-lambda: Simulation of multiple merger and kingman gene genealogies in species networks and species trees
    • Zhu S, Degnan JH, Goldstien SJ, Eldon B (2015). Hybrid-Lambda: simulation of multiple merger and Kingman gene genealogies in species networks and species trees. BMC Bioinformatics 16: 292-298.
    • (2015) BMC Bioinformatics , vol.16 , pp. 292-298
    • Zhu, S.1    Degnan, J.H.2    Goldstien, S.J.3    Eldon, B.4
  • 83
    • 60349083295 scopus 로고    scopus 로고
    • Growth of an RNA virus in single cells reveals a broad fitness distribution
    • Zhu Y, Yongky A, Yin J (2009). Growth of an RNA virus in single cells reveals a broad fitness distribution. Virology 385: 39-46.
    • (2009) Virology , vol.385 , pp. 39-46
    • Zhu, Y.1    Yongky, A.2    Yin, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.