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Volumn 199, Issue 3, 2015, Pages 841-856

Can the site-frequency spectrum distinguish exponential population growth from multiple-merger Coalescents?

Author keywords

Approximate Bayesian computation; Approximate maximum likelihood test; Coalescent; Multiple mergers; Population growth; Sitefrequency spectrum

Indexed keywords

MITOCHONDRIAL DNA;

EID: 84925002635     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.114.173807     Document Type: Article
Times cited : (73)

References (84)
  • 1
    • 70350176199 scopus 로고    scopus 로고
    • Frequency spectrum neutrality tests: One for all and all for one
    • Achaz, G., 2009 Frequency spectrum neutrality tests: one for all and all for one. Genetics 183: 249–258.
    • (2009) Genetics , vol.183 , pp. 249-258
    • Achaz, G.1
  • 2
    • 2442502566 scopus 로고    scopus 로고
    • Mitochondrial cytochrome b variation in the high-fecundity Atlantic cod: Trans-Atlantic clines and shallow gene genealogy
    • Árnason, E., 2004 Mitochondrial cytochrome b variation in the high-fecundity Atlantic cod: trans-Atlantic clines and shallow gene genealogy. Genetics 166: 1871–1885.
    • (2004) Genetics , vol.166 , pp. 1871-1885
    • Árnason, E.1
  • 3
    • 84924959549 scopus 로고    scopus 로고
    • An overview on approximate Bayesian computation
    • Baragatti, M., and P. Pudlo, 2014 An overview on approximate Bayesian computation. ESAIM Proc. 44: 291–299.
    • (2014) ESAIM Proc , vol.44 , pp. 291-299
    • Baragatti, M.1    Pudlo, P.2
  • 4
    • 78149388939 scopus 로고    scopus 로고
    • Approximate Bayesian computation in evolution and ecology
    • Beaumont, M. A., 2010 Approximate Bayesian computation in evolution and ecology. Annu. Rev. Ecol. Evol. Syst. 41: 379–406.
    • (2010) Annu. Rev. Ecol. Evol. Syst , vol.41 , pp. 379-406
    • Beaumont, M.A.1
  • 7
    • 0038648299 scopus 로고    scopus 로고
    • Stochastic flows associated to coalescent processes
    • Bertoin, J., and J.-F. Le Gall, 2003 Stochastic flows associated to coalescent processes. Probab. Theory Relat. Fields 126: 261–288.
    • (2003) Probab. Theory Relat. Fields , vol.126 , pp. 261-288
    • Bertoin, J.1    Le Gall, J.-F.2
  • 8
    • 84908206474 scopus 로고    scopus 로고
    • Descartes’ rule of signs and the identifiability of population demographic models from genomic variation data
    • Bhaskar, A., and Y. Song, 2014 Descartes’ rule of signs and the identifiability of population demographic models from genomic variation data. Ann. Stat. 42: 2469–2493.
    • (2014) Ann. Stat , vol.42 , pp. 2469-2493
    • Bhaskar, A.1    Song, Y.2
  • 9
    • 84922377375 scopus 로고    scopus 로고
    • 2015 Efficient inference of population size histories and locus-specific mutation rates from large-sample genomic variation data
    • in press
    • Bhaskar, A., Y. X. R. Wang, and Y. S. Song, 2015 Efficient inference of population size histories and locus-specific mutation rates from large-sample genomic variation data. Genome Res. (in press).
    • Genome Res
    • Bhaskar, A.1    Wang, Y.X.2    Song, Y.S.3
  • 10
    • 45049083076 scopus 로고    scopus 로고
    • Computing likelihoods for coalescents with multiple collisions in the infinitely many sites model
    • Birkner, M., and J. Blath, 2008 Computing likelihoods for coalescents with multiple collisions in the infinitely many sites model. J. Math. Biol. 57: 435–465.
    • (2008) J. Math. Biol , vol.57 , pp. 435-465
    • Birkner, M.1    Blath, J.2
  • 11
    • 15944407665 scopus 로고    scopus 로고
    • Alpha-stable branching and beta-coalescents. Electron
    • Birkner, M., J. Blath, M. Capaldo, A. Etheridge, M. Möhle et al., 2005 Alpha-stable branching and beta-coalescents. Electron. J. Probab. 10: 303–325.
    • (2005) J. Probab , vol.10 , pp. 303-325
    • Birkner, M.1    Blath, J.2    Capaldo, M.3    Etheridge, A.4    Möhle, M.5
  • 12
    • 84871723554 scopus 로고    scopus 로고
    • An ancestral recombination graph for diploid populations with skewed offspring distribution
    • Birkner, M., J. Blath, and B. Eldon, 2013a An ancestral recombination graph for diploid populations with skewed offspring distribution. Genetics 193: 255–290.
    • (2013) Genetics , vol.193 , pp. 255-290
    • Birkner, M.1    Blath, J.2    Eldon, B.3
  • 13
    • 84887030383 scopus 로고    scopus 로고
    • Statistical properties of the site-frequency spectrum associated with lambda-coalescents
    • Birkner, M., J. Blath, and B. Eldon, 2013b Statistical properties of the site-frequency spectrum associated with lambda-coalescents. Genetics 195: 1037–1053.
    • (2013) Genetics , vol.195 , pp. 1037-1053
    • Birkner, M.1    Blath, J.2    Eldon, B.3
  • 14
    • 79955475327 scopus 로고    scopus 로고
    • Importance sampling for lambda-coalescents in the infinitely many sites model
    • Birkner, M., J. Blath, and M. Steinrücken, 2011 Importance sampling for lambda-coalescents in the infinitely many sites model. Theor. Popul. Biol. 79: 155–173.
    • (2011) Theor. Popul. Biol , vol.79 , pp. 155-173
    • Birkner, M.1    Blath, J.2    Steinrücken, M.3
  • 15
    • 0001344844 scopus 로고
    • The latent roots of certain Markov chains arising in genetics: A new approach
    • Cannings, C., 1974 The latent roots of certain Markov chains arising in genetics: a new approach. I. Haploid models. Adv. Appl. Probab. 6: 260–290.
    • (1974) I. Haploid Models. Adv. Appl. Probab , vol.6 , pp. 260-290
    • Cannings, C.1
  • 16
    • 0000067183 scopus 로고
    • The latent roots of certain Markov chains arising in genetics: A new approach. II. Further haploid models
    • Cannings, C., 1975 The latent roots of certain Markov chains arising in genetics: a new approach. II. Further haploid models. Adv. Appl. Probab. 7: 264–282.
    • (1975) Adv. Appl. Probab , vol.7 , pp. 264-282
    • Cannings, C.1
  • 17
    • 56049094112 scopus 로고    scopus 로고
    • Intraspecific phylogeographic genomics from multiple complete mtDNA genomics in Atlantic cod (Gadus morhua): Origins of “codmother,” transatlantic vicariance, and midglacial population expansion
    • Carr, S. M., and H. D. Marshall, 2008 Intraspecific phylogeographic genomics from multiple complete mtDNA genomics in Atlantic cod (Gadus morhua): origins of “codmother,” transatlantic vicariance, and midglacial population expansion. Genetics 180: 381–389.
    • (2008) Genetics , vol.180 , pp. 381-389
    • Carr, S.M.1    Marshall, H.D.2
  • 19
    • 84861153207 scopus 로고    scopus 로고
    • ABC: An R package for approximate Bayesian computation (ABC)
    • Csilléry, K., O. François, and M. G. B. Blum, 2012 ABC: an R package for approximate Bayesian computation (ABC). Methods Ecol. Evol. 3: 475–479.
    • (2012) Methods Ecol. Evol , vol.3 , pp. 475-479
    • Csilléry, K.1    François, O.2    Blum, M.G.3
  • 20
    • 84890139341 scopus 로고    scopus 로고
    • Bayesian inference on a mixture model with spatial dependence
    • Cucala, L., and J. Marin, 2013 Bayesian inference on a mixture model with spatial dependence. J. Comput. Graph. Stat. 22: 584–597.
    • (2013) J. Comput. Graph. Stat , vol.22 , pp. 584-597
    • Cucala, L.1    Marin, J.2
  • 21
    • 0034983649 scopus 로고    scopus 로고
    • Haplotype tests using coalescent simulations conditional on the number of segregating sites
    • Depaulis, F., S. Mousset, and M. Veuille, 2001 Haplotype tests using coalescent simulations conditional on the number of segregating sites. Mol. Biol. Evol. 18: 1136–1138.
    • (2001) Mol. Biol. Evol , vol.18 , pp. 1136-1138
    • Depaulis, F.1    Mousset, S.2    Veuille, M.3
  • 22
    • 0031773191 scopus 로고    scopus 로고
    • Neutrality tests based on the distribution of haplotypes under an infinite-site model
    • Depaulis, F., and M. Veuille, 1998 Neutrality tests based on the distribution of haplotypes under an infinite-site model. Mol. Biol. Evol. 15: 1788–1790.
    • (1998) Mol. Biol. Evol , vol.15 , pp. 1788-1790
    • Depaulis, F.1    Veuille, M.2
  • 23
    • 0033243134 scopus 로고    scopus 로고
    • Particle representations for measure-valued population models
    • Donnelly, P., and T. G. Kurtz, 1999 Particle representations for measure-valued population models. Ann. Probab. 27: 166–205.
    • (1999) Ann. Probab , vol.27 , pp. 166-205
    • Donnelly, P.1    Kurtz, T.G.2
  • 24
    • 0029559462 scopus 로고
    • Coalescents and genealogical structure under neutrality
    • Donnelly, P., and S. Tavaré, 1995 Coalescents and genealogical structure under neutrality. Annu. Rev. Genet. 29: 401–421.
    • (1995) Annu. Rev. Genet , vol.29 , pp. 401-421
    • Donnelly, P.1    Tavaré, S.2
  • 25
    • 24144471796 scopus 로고    scopus 로고
    • A coalescent model for the effect of advantageous mutations on the genealogy of a population
    • Durrett, R., and J. Schweinsberg, 2005 A coalescent model for the effect of advantageous mutations on the genealogy of a population. Stochastic Processes Appl. 115: 1628–1657.
    • (2005) Stochastic Processes Appl , vol.115 , pp. 1628-1657
    • Durrett, R.1    Schweinsberg, J.2
  • 26
    • 79959378608 scopus 로고    scopus 로고
    • Estimation of parameters in large offspring number models and ratios of coalescence times
    • Eldon, B., 2011 Estimation of parameters in large offspring number models and ratios of coalescence times. Theor. Popul. Biol. 80: 16–28.
    • (2011) Theor. Popul. Biol , vol.80 , pp. 16-28
    • Eldon, B.1
  • 27
    • 33646168295 scopus 로고    scopus 로고
    • Coalescent processes when the distribution of offspring number among individuals is highly skewed
    • Eldon, B., and J. Wakeley, 2006 Coalescent processes when the distribution of offspring number among individuals is highly skewed. Genetics 172: 2621–2633.
    • (2006) Genetics , vol.172 , pp. 2621-2633
    • Eldon, B.1    Wakeley, J.2
  • 28
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive darwinian selection
    • Fay, J. C., and C.-I. Wu, 2000 Hitchhiking under positive darwinian selection. Genetics 155: 1405–1413.
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.-I.2
  • 29
    • 0029391126 scopus 로고
    • Statistical properties of segregating sites
    • Fu, Y. X., 1995 Statistical properties of segregating sites. Theor. Popul. Biol. 48: 172–197.
    • (1995) Theor. Popul. Biol , vol.48 , pp. 172-197
    • Fu, Y.X.1
  • 30
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality against population growth, hitchhiking, and background selection
    • Fu, Y. X., 1997 Statistical tests of neutrality against population growth, hitchhiking, and background selection. Genetics 147: 915–925.
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.X.1
  • 31
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu, Y. X., and W. H. Li, 1993 Statistical tests of neutrality of mutations. Genetics 133: 693–709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 33
    • 0001301442 scopus 로고    scopus 로고
    • The age of a mutation in a general coalescent tree. Stoch
    • Griffiths, R. C., and S. Tavaré, 1998 The age of a mutation in a general coalescent tree. Stoch. Models 14: 273–295.
    • (1998) Models , vol.14 , pp. 273-295
    • Griffiths, R.C.1    Tavaré, S.2
  • 34
  • 35
    • 80054114829 scopus 로고    scopus 로고
    • Sweepstakes reproductive success in highly fecund marine fish and shellfish: A review and commentary
    • Hedgecock, D., and A. I. Pudovkin, 2011 Sweepstakes reproductive success in highly fecund marine fish and shellfish: a review and commentary. Bull. Mar. Sci. 87: 971–1002.
    • (2011) Bull. Mar. Sci , vol.87 , pp. 971-1002
    • Hedgecock, D.1    Pudovkin, A.I.2
  • 37
    • 0020744702 scopus 로고
    • Properties of a neutral allele model with intragenic recombination
    • Hudson, R. R., 1983a Properties of a neutral allele model with intragenic recombination. Theor. Popul. Biol. 23: 183–201.
    • (1983) Theor. Popul. Biol , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 38
    • 0000424609 scopus 로고
    • Testing the constant-rate neutral allele model with protein sequence data
    • Hudson, R. R., 1983b Testing the constant-rate neutral allele model with protein sequence data. Evolution 37: 203–217.
    • (1983) Evolution , vol.37 , pp. 203-217
    • Hudson, R.R.1
  • 39
    • 0001935493 scopus 로고
    • in Oxford Surveys in Evolutionary Biology, Vol. 7, edited by D. J. Futuyma, and J. Antonovics. Oxford University Press, Oxford, UK
    • Hudson, R. R., 1990 Gene genealogies and the coalescent process, pp. 1–44 in Oxford Surveys in Evolutionary Biology, Vol. 7, edited by D. J. Futuyma, and J. Antonovics. Oxford University Press, Oxford, UK.
    • (1990) Gene Genealogies and the Coalescent Process , pp. 1-44
    • Hudson, R.R.1
  • 40
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a wright-fisher neutral model
    • Hudson, R. R., 2002 Generating samples under a wright-fisher neutral model. Bioinformatics 18: 337–338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 41
    • 0037573260 scopus 로고    scopus 로고
    • The coalescent process in a population with stochastically varying size
    • Kaj, I., and S. Krone, 2003 The coalescent process in a population with stochastically varying size. J. Appl. Probab. 40: 33–48.
    • (2003) J. Appl. Probab , vol.40 , pp. 33-48
    • Kaj, I.1    Krone, S.2
  • 44
    • 84925432521 scopus 로고    scopus 로고
    • The internal branch lengths of the Kingman coalescent
    • in press
    • Kersting, G., and I. Stanciu, 2015 The internal branch lengths of the Kingman coalescent. Ann. Appl. Probab. (in press).
    • (2015) Ann. Appl. Probab
    • Kersting, G.1    Stanciu, I.2
  • 45
    • 84920178681 scopus 로고    scopus 로고
    • Can one hear the shape of a population history?
    • Kim, J., E. Mossel, M. Z. Rácz, and N. Ross, 2015 Can one hear the shape of a population history? Theor. Popul. Biol. 100: 26–38.
    • (2015) Theor. Popul. Biol , vol.100 , pp. 26-38
    • Kim, J.1    Mossel, E.2    Rácz, M.Z.3    Ross, N.4
  • 47
    • 0002743467 scopus 로고
    • in Exchangeability in Probability and Statistics, edited by G. Koch, and F. Spizzichino.North-Holland, Amsterdam
    • Kingman, J. F. C., 1982b Exchangeability and the evolution of large populations, pp. 97–112 in Exchangeability in Probability and Statistics, edited by G. Koch, and F. Spizzichino.North-Holland, Amsterdam.
    • (1982) Exchangeability and the Evolution of Large Populations , pp. 97-112
    • Kingman, J.1
  • 48
    • 0002556819 scopus 로고
    • On the genealogy of large populations
    • Kingman, J. F. C., 1982c On the genealogy of large populations. J. Appl. Probab. 19: 27–43.
    • (1982) J. Appl. Probab , vol.19 , pp. 27-43
    • Kingman, J.1
  • 49
    • 84938545828 scopus 로고    scopus 로고
    • Computational inference beyond Kingman’s coalescent
    • in press
    • Koskela, J., P. Jenkins, and D. Spanò, 2015 Computational inference beyond Kingman’s coalescent. J. Appl. Probab. (in press).
    • (2015) J. Appl. Probab
    • Koskela, J.1    Jenkins, P.2    Spanò, D.3
  • 50
    • 0031835126 scopus 로고    scopus 로고
    • Maximum likelihood estimation of population growth rates based on the coalescent
    • Kuhner, M. K., J. Yamato, and J. Felsenstein, 1998 Maximum likelihood estimation of population growth rates based on the coalescent. Genetics 149: 429–434.
    • (1998) Genetics , vol.149 , pp. 429-434
    • Kuhner, M.K.1    Yamato, J.2    Felsenstein, J.3
  • 52
    • 0038896666 scopus 로고    scopus 로고
    • Robustness results for the coalescent
    • Möhle, M., 1998 Robustness results for the coalescent. J. Appl. Probab. 35: 438–447.
    • (1998) J. Appl. Probab , vol.35 , pp. 438-447
    • Möhle, M.1
  • 53
    • 0035470867 scopus 로고    scopus 로고
    • Classification of coalescent processes for haploid exchangeable coalescent processes
    • Möhle, M., and S. Sagitov, 2001 Classification of coalescent processes for haploid exchangeable coalescent processes. Ann. Probab. 29: 1547–1562.
    • (2001) Ann. Probab , vol.29 , pp. 1547-1562
    • Möhle, M.1    Sagitov, S.2
  • 54
    • 41149157336 scopus 로고    scopus 로고
    • Can one learn history from the allelic spectrum?
    • Myers, S., C. Fefferman, and N. Patterson, 2008 Can one learn history from the allelic spectrum? Theor. Popul. Biol. 73: 342–348.
    • (2008) Theor. Popul. Biol , vol.73 , pp. 342-348
    • Myers, S.1    Fefferman, C.2    Patterson, N.3
  • 55
    • 84872201548 scopus 로고    scopus 로고
    • Genealogies of rapidly adapting populations
    • Neher, R. A., and O. Hallatschek, 2013 Genealogies of rapidly adapting populations. Proc. Natl. Acad. Sci. USA 110: 437–442.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 437-442
    • Neher, R.A.1    Hallatschek, O.2
  • 56
    • 70350433618 scopus 로고    scopus 로고
    • in Handbook of Statistical Genetics, Ed. 2, edited by D. J. Balding, M. J. Bishop, and C. Cannings. John Wiley & Sons, Chichester, UK
    • Nordborg, M., 2001 Coalescent theory, pp. 179–212 in Handbook of Statistical Genetics, Ed. 2, edited by D. J. Balding, M. J. Bishop, and C. Cannings. John Wiley & Sons, Chichester, UK.
    • (2001) Coalescent Theory , pp. 179-212
    • Nordborg, M.1
  • 57
    • 0033233681 scopus 로고    scopus 로고
    • Coalescents with multiple collisions
    • Pitman, J., 1999 Coalescents with multiple collisions. Ann. Probab. 27: 1870–1902.
    • (1999) Ann. Probab , vol.27 , pp. 1870-1902
    • Pitman, J.1
  • 58
    • 0141566652 scopus 로고    scopus 로고
    • New explicit expressions for relative frequencies of single-nucleotide polymorphisms with application to statistical inference on population growth
    • Polanski, A., and M. Kimmel, 2003 New explicit expressions for relative frequencies of single-nucleotide polymorphisms with application to statistical inference on population growth. Genetics 165: 427–436.
    • (2003) Genetics , vol.165 , pp. 427-436
    • Polanski, A.1    Kimmel, M.2
  • 59
    • 0032735986 scopus 로고    scopus 로고
    • Population growth of human Y chromosomes: A study of Y chromosome microsatellites
    • Pritchard, J. K., M. T. Seielstad, A. Perez-Lezaun, and M. W. Feldman, 1999 Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Mol. Biol. Evol. 16: 1791–1798.
    • (1999) Mol. Biol. Evol , vol.16 , pp. 1791-1798
    • Pritchard, J.K.1    Seielstad, M.T.2    Perez-Lezaun, A.3    Feldman, M.W.4
  • 60
    • 50649125535 scopus 로고    scopus 로고
    • Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination
    • Ramírez-Soriano, A., S. E. Ramos-Onsins, J. Rozas, F. Calafell, and A. Navarro, 2008 Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination. Genetics 179: 555–567.
    • (2008) Genetics , vol.179 , pp. 555-567
    • Ramírez-Soriano, A.1    Ramos-Onsins, S.E.2    Rozas, J.3    Calafell, F.4    Navarro, A.5
  • 61
    • 0036897674 scopus 로고    scopus 로고
    • Statistical properties of new neutrality tests against population growth
    • Ramos-Onsins, S. E., and J. Rozas, 2002 Statistical properties of new neutrality tests against population growth. Mol. Biol. Evol. 19: 2092–2100.
    • (2002) Mol. Biol. Evol , vol.19 , pp. 2092-2100
    • Ramos-Onsins, S.E.1    Rozas, J.2
  • 62
    • 84907095419 scopus 로고    scopus 로고
    • R: A Language and Environment for Statistical Computing
    • R Core Team, Vienna, Austria
    • R Core Team, 2012 R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria.
    • (2012) R Foundation for Statistical Computing
  • 63
    • 84901306779 scopus 로고    scopus 로고
    • The impact of accelerating faster than exponential population growth on genetic variation
    • Reppell, M., M. Boehnke, and S. Zöllner, 2014 The impact of accelerating faster than exponential population growth on genetic variation. Genetics 196: 819–828.
    • (2014) Genetics , vol.196 , pp. 819-828
    • Reppell, M.1    Boehnke, M.2    Zöllner, S.3
  • 64
    • 84900500340 scopus 로고    scopus 로고
    • Characterization of genetic diversity in the nematode pristionchus pacificus from population-scale resequencing data
    • Rödelsperger, C., R. A. Neher, A. M. Weller, G. Eberhardt, H. Witte et al., 2014 Characterization of genetic diversity in the nematode pristionchus pacificus from population-scale resequencing data. Genetics 196: 1153–1165.
    • (2014) Genetics , vol.196 , pp. 1153-1165
    • Rödelsperger, C.1    Neher, R.A.2    Weller, A.M.3    Eberhardt, G.4    Witte, H.5
  • 65
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • Rogers, A. R., and H. C. Harpending, 1992 Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9: 552–569.
    • (1992) Mol. Biol. Evol , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.C.2
  • 66
    • 0000439370 scopus 로고
    • Bayesian justifiable and relevant frequency calculations for the applied statistician
    • Rubin, D. B., 1984 Bayesian justifiable and relevant frequency calculations for the applied statistician. Ann. Stat. 12: 1151–1172.
    • (1984) Ann. Stat , vol.12 , pp. 1151-1172
    • Rubin, D.B.1
  • 67
    • 0033233843 scopus 로고    scopus 로고
    • The general coalescent with asynchronous mergers of ancestral lines
    • Sagitov, S., 1999 The general coalescent with asynchronous mergers of ancestral lines. J. Appl. Probab. 36: 1116–1125.
    • (1999) J. Appl. Probab , vol.36 , pp. 1116-1125
    • Sagitov, S.1
  • 68
    • 17444382277 scopus 로고    scopus 로고
    • Gene genealogy and properties of test statistics of neutrality under population growth
    • Sano, A., and H. Tachida, 2005 Gene genealogy and properties of test statistics of neutrality under population growth. Genetics 169: 1687–1697.
    • (2005) Genetics , vol.169 , pp. 1687-1697
    • Sano, A.1    Tachida, H.2
  • 69
    • 46449135597 scopus 로고    scopus 로고
    • A coalescent process with simultaneous multiple mergers for approximating the gene genealogies of many marine organisms
    • Sargsyan, O., and J. Wakeley, 2008 A coalescent process with simultaneous multiple mergers for approximating the gene genealogies of many marine organisms. Theor. Popul. Biol. 74: 104–114.
    • (2008) Theor. Popul. Biol , vol.74 , pp. 104-114
    • Sargsyan, O.1    Wakeley, J.2
  • 70
    • 0026460082 scopus 로고
    • Population genetics of polymorphism and divergence
    • Sawyer, S. A., and D. L. Hartl, 1992 Population genetics of polymorphism and divergence. Genetics 132: 1161–1176.
    • (1992) Genetics , vol.132 , pp. 1161-1176
    • Sawyer, S.A.1    Hartl, D.L.2
  • 71
    • 0037843651 scopus 로고    scopus 로고
    • Coalescent processes obtained from supercritical Galton-Watson processes
    • Schweinsberg, J., 2003 Coalescent processes obtained from supercritical Galton-Watson processes. Stochastic Processes Appl. 106: 107–139.
    • (2003) Stochastic Processes Appl , vol.106 , pp. 107-139
    • Schweinsberg, J.1
  • 72
    • 84879316317 scopus 로고    scopus 로고
    • The number of small blocks in exchangeable random partitions. ALEA Lat
    • Schweinsberg, J., 2010 The number of small blocks in exchangeable random partitions. ALEA Lat. Am. J. Probab. Math. Stat. 7: 217–242.
    • (2010) Am. J. Probab. Math. Stat , vol.7 , pp. 217-242
    • Schweinsberg, J.1
  • 73
    • 0029099781 scopus 로고
    • Properties of statistical tests of neutrality for DNA polymorphism data
    • Simonsen, K. L., G. A. Churchill, and C. F. Aquadro, 1995 Properties of statistical tests of neutrality for DNA polymorphism data. Genetics 141: 413–429.
    • (1995) Genetics , vol.141 , pp. 413-429
    • Simonsen, K.L.1    Churchill, G.A.2    Aquadro, C.F.3
  • 74
    • 0025951996 scopus 로고
    • Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations
    • Slatkin, M., and R. R. Hudson, 1991 Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129: 555–562.
    • (1991) Genetics , vol.129 , pp. 555-562
    • Slatkin, M.1    Hudson, R.R.2
  • 75
    • 84880698033 scopus 로고    scopus 로고
    • Analysis of DNA sequence variation within marine species using beta-coalescents
    • Steinrücken, M., M. Birkner, and J. Blath, 2013 Analysis of DNA sequence variation within marine species using beta-coalescents. Theor. Popul. Biol. 87: 15–24.
    • (2013) Theor. Popul. Biol , vol.87 , pp. 15-24
    • Steinrücken, M.1    Birkner, M.2    Blath, J.3
  • 77
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima, F., 1983 Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437–460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 78
    • 0024762773 scopus 로고
    • The effect of change in population size on DNA polymorphism
    • Tajima, F., 1989a The effect of change in population size on DNA polymorphism. Genetics 123: 597–601.
    • (1989) Genetics , vol.123 , pp. 597-601
    • Tajima, F.1
  • 79
    • 0024313579 scopus 로고
    • Statisticalmethods for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F., 1989b Statisticalmethods for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585–595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 80
    • 0031014291 scopus 로고    scopus 로고
    • Inferring coalescence times from DNA sequence data
    • Tavaré, S., D. J. Balding, R. C. Griffiths, and P. Donnelly, 1997 Inferring coalescence times from DNA sequence data. Genetics 145: 505–518.
    • (1997) Genetics , vol.145 , pp. 505-518
    • Tavaré, S.1    Balding, D.J.2    Griffiths, R.C.3    Donnelly, P.4
  • 81
    • 84901481068 scopus 로고    scopus 로고
    • Coalescence 2.0: A multiple branching of recent theoretical developments and their applications
    • Tellier, A., and C. Lemaire, 2014 Coalescence 2.0: a multiple branching of recent theoretical developments and their applications. Mol. Ecol. 23: 2637–2652.
    • (2014) Mol. Ecol , vol.23 , pp. 2637-2652
    • Tellier, A.1    Lemaire, C.2
  • 82
    • 65649112683 scopus 로고    scopus 로고
    • Coalescent Theory
    • Greenwood Village, CO
    • Wakeley, J., 2007 Coalescent Theory, Roberts & Company, Greenwood Village, CO.
    • (2007) Roberts & Company
    • Wakeley, J.1
  • 83
    • 0034984837 scopus 로고    scopus 로고
    • Coalescent simulations and statistical tests of neutrality
    • Wall, J. D., and R. R. Hudson, 2001 Coalescent simulations and statistical tests of neutrality. Mol. Biol. Evol. 18: 1134–1135.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1134-1135
    • Wall, J.D.1    Hudson, R.R.2
  • 84
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson, G. A., 1975 On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7: 1539–1546.
    • (1975) Theor. Popul. Biol , vol.7 , pp. 1539-1546
    • Watterson, G.A.1


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