Using maximum likelihood to estimate population size from temporal changes in allele frequencies

Genetics

Volumn 152, Issue 2, 1999, Pages 755-761

  Williamson, Ellen G ^a   Slatkin, Montgomery ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENE FREQUENCY; MAXIMUM LIKELIHOOD METHOD; PERFORMANCE; POPULATION GENETICS; POPULATION GROWTH; PRIORITY JOURNAL; SIMULATION; STATISTICAL MODEL; VARIANCE;

ALLELES; ANIMALS; ESOCIDAE; GENE FREQUENCY; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; POPULATION DYNAMICS; VARIATION (GENETICS);

EID: 0032979874     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (26)

1. BURCZVK,J., 1996 Variance effective population size based on multilocus gamete frequencies in coniferous populations: an example of a Scots pine clonal seed orchard. Heredity 77: 74-82.
2. DALLAS.J. F., F. BONHOMME, P. IîouRSOT,J. BRITTO.V-DAVIDIAN and V. BAUCIIAU, 1998 Population gcncticstructure in a Robertsonian race of house mice: evidence from microsatellite polymorphism. Heredity 80: 70-77.
3. EDWARDS, A. W. F., 1992 Likelihood, Expanded Edition. Johns Hopkins University Press, Baltimore.
4. EWKNS, W.J., 1979 Mathematical Population Genetics. Springer-Verlag, New York.
5. FELLF.R, W., 1950 An Introduction to Probability Theoiy and Its Applications. John Wiley and Sons, New York.
6. HKDGKCOCK, D., V. CHOW and R. S. WAPLKS, 1992 Effective population numbers of shellfish broodstocks estimated from temporal variance in allclic frequencies. Aquaculture 108: 215-232.
7. HKDRICK, P. W., D. HKDGKCOCK and S. HAMKLBKRG, 1995 Effective population size in winter-run chinook salmon. Conserv. Biol. 9: 615-624.
8. HUSBAND, B. C., and S. C. H. BARRKTT, 1992a Effective population size and genetic drift in tristylous Eichhomiapaniatlata (Pontederiaceae). Evolution 46: 1875-1890.
9. HUSBAND, B. C., and S. C. H. BARRKIT, 1992b Genetic drift and the maintenance of the style length polymorphism in tristylous populations of Eichhomia paniailata (Pontederiaccae). Heredity 69: 440-449.
10. JORDAN, W. C., A. F. YOUNGSON, D. W. HAY and A. FKRGUSON, 1992 Genetic protein variation in natural populations of Atlantic salmon (Salmo salar) in Scotland: temporal and spatial variation. Can. J. Fish. Aquat. Sci. 49: 1863-1872.
11. JOKDK, P. E., and N. RYMAN, 1996 Demographic genetics of brown trout (Salmo trutta) and estimation of effective population size from temporal change of allele frequencies. Genetics 143: 1369-1381.
12. KRIMBAS, C. B., and S. TSAKAS, 1971 The genetics of Dacus olene. V. Changes of esterase polymorphism in a natural population following insecticide control: selection of drift? Evolution 25: 454-460.
13. LAIKRK., L., P. E. JOKDK and N. RYMAN, 1998 Temporal change of mitochondrial DNA haplotype frequencies and female effective size in a brown trout (Salmo tnttta) population. Evolution 52: 910-915.
14. LKHMANN, T., W. A. HAWLKV, H. GRKBKRT and F. H. COLLINS, 1998 The effective population size of Anopheles gambiae'm Kenya: implications for population structure. Mol. Biol. Evol. 15: 264-276.
15. LKSSIOS, H. A.,J. R. WEINBERG and V. R. STARCZAK, 1994 Temporal Variation in populations of the marine isopocl Excirolana: how stable are gene frequencies and morphology? Evolution 48: 549-503.
16. LUIKART, G., W. B. SlIEKWIN, M. SlEELE and F. W. Al.LENDORF, 1998 Usefulness of molecular markers for detecting population bottlenecks via monitoring genetic change. Mol. Ecol. 7: 963-974.
17. MILLKK, L. M., and A. R. KAPUSCINSKI, 1997 Historical analysis of genetic variation reveals low effective population size in a northern pike (ICsox lucius) population. Genetics 147: 1249-1258.
18. NEI,M.,andF.TAjiMA, 1981 Genetic drift and estimation of effective population size. Genetics 98: 625-640.
19. POLLAK, E., 1983 A new method for estimating the effective population size from allele frequency changes. Genetics 104: 531-548.
20. RICHARDS, C., and P. L. LEBKRG, 1996 Temporal changes in allele frequencies and a population's history- of severe bottlenecks. Consen-. Biol. 10: 832-839.
21. SCRIBNER, K. T.,J. W. ARNTZEN andT. BURKE, 1997 Effective number of breeding adults in Bufo bufo estimated from age-specific variation at minisatellitc loci. Mol. Ecol. 6: 701-712.
22. SOULÉ, M. E. (Editor), 1986 Conservation Kiology: The Science of Scarcity and Diversity. Sinauer Associates, Sunderland, MA.
23. WAPLES, R. S., 1989a A generalized approach for estimating effective population size from temporal changes in allele frequency. Genetics 121: 379-392.
24. WAPLES, R. S., 1989b Temporal variation in allele frequencies: testing the right hypothesis. Evolution 43: 1236-1251.
25. WAPLES, R. S., 1990 Temporal changes of allele frequency in Pacific salmon: implications for mixed-stock fishery analysis. Can. J. Fish. Aquat. Sci. 47: 968-976.
26. WAPLES, R. S., and D. J. TEEL, 1990 Conservation genetics of Pacific salmon: L Temporal changes in allele frequency. Conscrv. Biol. 4: 144-156.