-
2
-
-
0001468848
-
-
(eds Gesteland, R. F., Cech, T. R., Atkins, J. F) (Cold Spring Harbor Laboratory Press
-
Burge, C. B., Tuschl, T., Sharp, P. A. in The RNA World II (eds Gesteland, R. F., Cech, T. R., Atkins, J. F.) 525-560 (Cold Spring Harbor Laboratory Press, 1999).
-
(1999)
The RNA World II
, pp. 525-560
-
-
Burge, C.B.1
Tuschl, T.2
Sharp, P.A.3
-
4
-
-
0141924550
-
The Prp19p-associated complex in spliceosome activation
-
Chan, S.-P., Kao, D.-I., Tsai, W.-Y., Cheng, S.-C. The Prp19p-associated complex in spliceosome activation. Science 302, 279-282 (2003).
-
(2003)
Science
, vol.302
, pp. 279-282
-
-
Chan, S.-P.1
Kao, D.-I.2
Tsai, W.-Y.3
Cheng, S.-C.4
-
5
-
-
0036269649
-
Characterization of interactions among the Cef1p-Prp19p-associated splicing complex
-
Ohi, M. D., Gould, K. L. Characterization of interactions among the Cef1p-Prp19p-associated splicing complex. RNA 8, 798-815 (2002).
-
(2002)
RNA
, vol.8
, pp. 798-815
-
-
Ohi, M.D.1
Gould, K.L.2
-
6
-
-
70449625597
-
The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome
-
Fabrizio, P. et al. The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome. Mol. Cell 36, 593-608 (2009).
-
(2009)
Mol. Cell
, vol.36
, pp. 593-608
-
-
Fabrizio, P.1
-
7
-
-
0027739852
-
Mutations in U6 snRNA that alter splice site specificity: Implications for the active site
-
Lesser, C. F., Guthrie, C. Mutations in U6 snRNA that alter splice site specificity: implications for the active site. Science 262, 1982-1988 (1993).
-
(1993)
Science
, vol.262
, pp. 1982-1988
-
-
Lesser, C.F.1
Guthrie, C.2
-
8
-
-
0027923620
-
Involvement of U6 snRNA in 5 splice site selection
-
Kandels-Lewis, S., Séraphin, B. Involvement of U6 snRNA in 5 splice site selection. Science 262, 2035-2039 (1993).
-
(1993)
Science
, vol.262
, pp. 2035-2039
-
-
Kandels-Lewis, S.1
Séraphin, B.2
-
9
-
-
0032537739
-
RNA unwinding in U4/U6 snRNPs requires ATP hydrolysis and the DEIH-box splicing factor Brr2
-
Raghunathan, P. L., Guthrie, C. RNA unwinding in U4/U6 snRNPs requires ATP hydrolysis and the DEIH-box splicing factor Brr2. Curr. Biol. 8, 847-855 (1998).
-
(1998)
Curr. Biol.
, vol.8
, pp. 847-855
-
-
Raghunathan, P.L.1
Guthrie, C.2
-
10
-
-
0032515969
-
The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro
-
Laggerbauer, B., Achsel, T., Lührmann, R. The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro. Proc. Natl Acad. Sci. USA 95, 4188-4192 (1998).
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 4188-4192
-
-
Laggerbauer, B.1
Achsel, T.2
Lührmann, R.3
-
11
-
-
0026605043
-
U5 snRNA interacts with exon sequences at 5 and 3 splice sites
-
Newman, A. J., Norman, C. U5 snRNA interacts with exon sequences at 5 and 3 splice sites. Cell 68, 743-754 (1992).
-
(1992)
Cell
, vol.68
, pp. 743-754
-
-
Newman, A.J.1
Norman, C.2
-
12
-
-
0027739853
-
The U5 and U6 small nuclear RNAs as active site components of the spliceosome
-
Sontheimer, E. J., Steitz, J. A. The U5 and U6 small nuclear RNAs as active site components of the spliceosome. Science 262, 1989-1996 (1993).
-
(1993)
Science
, vol.262
, pp. 1989-1996
-
-
Sontheimer, E.J.1
Steitz, J.A.2
-
13
-
-
84879311174
-
Molecular dissection of step 2 catalysis of yeast pre-mRNA splicing investigated in a purified system
-
Ohrt, T.et al. Molecular dissection of step 2 catalysis of yeast pre-mRNA splicing investigated in a purified system. RNA 19, 902-915 (2013).
-
(2013)
RNA
, vol.19
, pp. 902-915
-
-
Ohrt, T.1
-
14
-
-
84861984263
-
Structure function and regulation of spliceosomal RNA helicases
-
Cordin, O., Hahn, D., Beggs, J. D. Structure, function and regulation of spliceosomal RNA helicases. Curr. Opin. Cell Biol. 24, 431-438 (2012).
-
(2012)
Curr. Opin. Cell Biol.
, vol.24
, pp. 431-438
-
-
Cordin, O.1
Hahn, D.2
Beggs, J.D.3
-
15
-
-
44949117567
-
A conformational rearrangement in the spliceosome sets the stage for Prp22-dependent mRNA release
-
Schwer, B. A conformational rearrangement in the spliceosome sets the stage for Prp22-dependent mRNA release. Mol. Cell 30, 743-754 (2008).
-
(2008)
Mol. Cell
, vol.30
, pp. 743-754
-
-
Schwer, B.1
-
16
-
-
0026088747
-
Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes
-
Company, M., Arenas, J., Abelson, J. Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes. Nature 349, 487-493 (1991).
-
(1991)
Nature
, vol.349
, pp. 487-493
-
-
Company, M.1
Arenas, J.2
Abelson, J.3
-
17
-
-
29144515824
-
Spliceosome disassembly catalyzed by Prp43 and its associated components Ntr1 and Ntr2
-
Tsai, R.-T. et al. Spliceosome disassembly catalyzed by Prp43 and its associated components Ntr1 and Ntr2. Genes Dev. 19, 2991-3003 (2005).
-
(2005)
Genes Dev.
, vol.19
, pp. 2991-3003
-
-
Tsai, R.-T.1
-
18
-
-
77950516144
-
Conformational dynamics of single pre-mRNA molecules during in vitro splicing
-
Abelson, J. et al. Conformational dynamics of single pre-mRNA molecules during in vitro splicing. Nat. Struct. Mol. Biol. 17, 504-512 (2010).
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 504-512
-
-
Abelson, J.1
-
19
-
-
84958967476
-
Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 A resolution
-
Nguyen, T. H. D. et al. Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 A resolution. Nature 530, 298-302 (2016).
-
(2016)
Nature
, vol.530
, pp. 298-302
-
-
Nguyen, T.H.D.1
-
20
-
-
84956686435
-
The 3.8 A structure of the U4/U6.U5 tri-snRNP: Insights into spliceosome assembly and catalysis
-
Wan, R. et al. The 3.8 A structure of the U4/U6.U5 tri-snRNP: Insights into spliceosome assembly and catalysis. Science 351, 466-475 (2016).
-
(2016)
Science
, vol.351
, pp. 466-475
-
-
Wan, R.1
-
21
-
-
84873629024
-
Crystal structure of Prp8 reveals active site cavity of the spliceosome
-
Galej, W. P., Oubridge, C., Newman, A. J., Nagai, K. Crystal structure of Prp8 reveals active site cavity of the spliceosome. Nature 493, 638-643 (2013).
-
(2013)
Nature
, vol.493
, pp. 638-643
-
-
Galej, W.P.1
Oubridge, C.2
Newman, A.J.3
Nagai, K.4
-
22
-
-
84858799296
-
Cwc2 and its human homologue RBM22 promote an active conformation of the spliceosome catalytic centre
-
Rasche, N. et al. Cwc2 and its human homologue RBM22 promote an active conformation of the spliceosome catalytic centre. EMBO J. 31, 1591-1604 (2012).
-
(2012)
EMBO J.
, vol.31
, pp. 1591-1604
-
-
Rasche, N.1
-
23
-
-
34147179830
-
U2 toggles iteratively between the stem IIa and stem IIc conformations to promote pre-mRNA splicing
-
Hilliker, A. K., Mefford, M. A., Staley, J. P. U2 toggles iteratively between the stem IIa and stem IIc conformations to promote pre-mRNA splicing. Genes Dev. 21, 821-834 (2007).
-
(2007)
Genes Dev.
, vol.21
, pp. 821-834
-
-
Hilliker, A.K.1
Mefford, M.A.2
Staley, J.P.3
-
24
-
-
34147174235
-
Rearrangement of competing U2 RNA helices within the spliceosome promotes multiple steps in splicing
-
Perriman, R. J., Ares, M., Jr. Rearrangement of competing U2 RNA helices within the spliceosome promotes multiple steps in splicing. Genes Dev. 21, 811-820 (2007).
-
(2007)
Genes Dev.
, vol.21
, pp. 811-820
-
-
Perriman, R.J.1
Ares, M.2
-
25
-
-
73249134403
-
Physical and genetic interactions of yeast Cwc21p, an ortholog of human SRm300/SRRM2, suggest a role at the catalytic center of the spliceosome
-
Grainger, R. J., Barrass, J. D., Jacquier, A., Rain, J.-C., Beggs, J. D. Physical and genetic interactions of yeast Cwc21p, an ortholog of human SRm300/SRRM2, suggest a role at the catalytic center of the spliceosome. RNA 15, 2161-2173 (2009).
-
(2009)
RNA
, vol.15
, pp. 2161-2173
-
-
Grainger, R.J.1
Barrass, J.D.2
Jacquier, A.3
Rain, J.-C.4
Beggs, J.D.5
-
26
-
-
84942474131
-
Structure of a yeast spliceosome at 3.6-angstrom resolution
-
Yan, C. et al. Structure of a yeast spliceosome at 3.6-angstrom resolution. Science 349, 1182-1191 (2015).
-
(2015)
Science
, vol.349
, pp. 1182-1191
-
-
Yan, C.1
-
27
-
-
84878849387
-
Structural basis of Brr2-Prp8 interactions and implications for U5 snRNP biogenesis and the spliceosome active site
-
Nguyen, T. H. D. et al. Structural basis of Brr2-Prp8 interactions and implications for U5 snRNP biogenesis and the spliceosome active site. Structure 21, 910-919 (2013).
-
(2013)
Structure
, vol.21
, pp. 910-919
-
-
Nguyen, T.H.D.1
-
28
-
-
0035053295
-
Functional contacts with a range of splicing proteins suggest a central role for Brr2p in the dynamic control of the order of events in spliceosomes of Saccharomyces cerevisiae
-
van Nues, R. W., Beggs, J. D. Functional contacts with a range of splicing proteins suggest a central role for Brr2p in the dynamic control of the order of events in spliceosomes of Saccharomyces cerevisiae. Genetics 157, 1451-1467 (2001).
-
(2001)
Genetics
, vol.157
, pp. 1451-1467
-
-
Van Nues, R.W.1
Beggs, J.D.2
-
29
-
-
44949246374
-
Nought may endure but mutability": Spliceosome dynamics and the regulation of splicing
-
Smith, D. J., Query, C. C., Konarska, M. M. "Nought may endure but mutability": spliceosome dynamics and the regulation of splicing. Mol. Cell 30, 657-666 (2008).
-
(2008)
Mol. Cell
, vol.30
, pp. 657-666
-
-
Smith, D.J.1
Query, C.C.2
Konarska, M.M.3
-
30
-
-
32444443532
-
Repositioning of the reaction intermediate within the catalytic center of the spliceosome
-
Konarska, M. M., Vilardell, J., Query, C. C. Repositioning of the reaction intermediate within the catalytic center of the spliceosome. Mol. Cell 21, 543-553 (2006).
-
(2006)
Mol. Cell
, vol.21
, pp. 543-553
-
-
Konarska, M.M.1
Vilardell, J.2
Query, C.C.3
-
31
-
-
0002690513
-
Site-specific crosslinks of yeast U6 snRNA to the pre-mRNA near the 5 splice site
-
Kim, C. H., Abelson, J. Site-specific crosslinks of yeast U6 snRNA to the pre-mRNA near the 5 splice site. RNA 2, 995-1010 (1996).
-
(1996)
RNA
, vol.2
, pp. 995-1010
-
-
Kim, C.H.1
Abelson, J.2
-
32
-
-
84888357821
-
Crystal structure of the human eIF4AIII-CWC22 complex shows how a DEAD-box protein is inhibited by a MIF4G domain
-
Buchwald, G., Schüssler, S., Basquin, C., Le Hir, H., Conti, E. Crystal structure of the human eIF4AIII-CWC22 complex shows how a DEAD-box protein is inhibited by a MIF4G domain. Proc. Natl Acad. Sci. USA 110, E4611-E4618 (2013).
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. E4611-E4618
-
-
Buchwald, G.1
Schüssler, S.2
Basquin, C.3
Le Hir, H.4
Conti, E.5
-
33
-
-
0026486883
-
A novel base-pairing interaction between U2 and U6 snRNAs suggests a mechanism for the catalytic activation of the spliceosome
-
Madhani, H. D., Guthrie, C. A novel base-pairing interaction between U2 and U6 snRNAs suggests a mechanism for the catalytic activation of the spliceosome. Cell 71, 803-817 (1992).
-
(1992)
Cell
, vol.71
, pp. 803-817
-
-
Madhani, H.D.1
Guthrie, C.2
-
34
-
-
84901929739
-
Evidence for a group II intron-like catalytic triplex in the spliceosome
-
Fica, S. M., Mefford, M. A., Piccirilli, J. A., Staley, J. P. Evidence for a group II intron-like catalytic triplex in the spliceosome. Nat. Struct. Mol. Biol. 21, 464-471 (2014).
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 464-471
-
-
Fica, S.M.1
Mefford, M.A.2
Piccirilli, J.A.3
Staley, J.P.4
-
35
-
-
0027184481
-
A general two-metal-ion mechanism for catalytic RNA
-
Steitz, T. A., Steitz, J. A. A general two-metal-ion mechanism for catalytic RNA. Proc. Natl Acad. Sci. USA 90, 6498-6502 (1993).
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 6498-6502
-
-
Steitz, T.A.1
Steitz, J.A.2
-
36
-
-
84887624226
-
RNA catalyses nuclear pre-mRNA splicing
-
Fica, S. M. et al. RNA catalyses nuclear pre-mRNA splicing. Nature 503, 229-234 (2013).
-
(2013)
Nature
, vol.503
, pp. 229-234
-
-
Fica, S.M.1
-
37
-
-
84908347683
-
Crystal structure of a eukaryotic group II intron lariat
-
Robart, A. R., Chan, R. T., Peters, J. K., Rajashankar, K. R., Toor, N. Crystal structure of a eukaryotic group II intron lariat. Nature 514, 193-197 (2014).
-
(2014)
Nature
, vol.514
, pp. 193-197
-
-
Robart, A.R.1
Chan, R.T.2
Peters, J.K.3
Rajashankar, K.R.4
Toor, N.5
-
38
-
-
84873041707
-
Link of NTR-mediated spliceosome disassembly with DEAH-box ATPases Prp2, Prp16, and Prp22
-
Chen, H.-C., Tseng, C.-K., Tsai, R.-T., Chung, C.-S., Cheng, S.-C. Link of NTR-mediated spliceosome disassembly with DEAH-box ATPases Prp2, Prp16, and Prp22. Mol. Cell. Biol. 33, 514-525 (2013).
-
(2013)
Mol. Cell. Biol.
, vol.33
, pp. 514-525
-
-
Chen, H.-C.1
Tseng, C.-K.2
Tsai, R.-T.3
Chung, C.-S.4
Cheng, S.-C.5
-
39
-
-
71449119694
-
Reconstitution of both steps of Saccharomyces cerevisiae splicing with purified spliceosomal components
-
Warkocki, Z. et al. Reconstitution of both steps of Saccharomyces cerevisiae splicing with purified spliceosomal components. Nat. Struct. Mol. Biol. 16, 1237-1243 (2009).
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1237-1243
-
-
Warkocki, Z.1
-
40
-
-
70350532246
-
Cwc25 is a novel splicing factor required after Prp2 and Yju2 to facilitate the first catalytic reaction
-
Chiu, Y.-F. et al. Cwc25 is a novel splicing factor required after Prp2 and Yju2 to facilitate the first catalytic reaction. Mol. Cell. Biol. 29, 5671-5678 (2009).
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 5671-5678
-
-
Chiu, Y.-F.1
-
41
-
-
84890208734
-
Biased Brownian ratcheting leads to pre-mRNA remodeling and capture prior to first-step splicing
-
Krishnan, R. et al. Biased Brownian ratcheting leads to pre-mRNA remodeling and capture prior to first-step splicing. Nat. Struct. Mol. Biol. 20, 1450-1457 (2013).
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 1450-1457
-
-
Krishnan, R.1
-
42
-
-
66149157000
-
Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome
-
Voorhees, R. M., Weixlbaumer, A., Loakes, D., Kelley, A. C., Ramakrishnan, V. Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome. Nat. Struct. Mol. Biol. 16, 528-533 (2009).
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 528-533
-
-
Voorhees, R.M.1
Weixlbaumer, A.2
Loakes, D.3
Kelley, A.C.4
Ramakrishnan, V.5
-
43
-
-
84959420989
-
Spliceosomal DEAH-Box ATPases remodel pre-mRNA to activate alternative splice sites
-
Semlow, D. R., Blanco, M. R., Walter, N. G., Staley, J. P. Spliceosomal DEAH-Box ATPases remodel pre-mRNA to activate alternative splice sites. Cell 164, 985-998 (2016).
-
(2016)
Cell
, vol.164
, pp. 985-998
-
-
Semlow, D.R.1
Blanco, M.R.2
Walter, N.G.3
Staley, J.P.4
-
44
-
-
78650446117
-
DEAH-box ATPase Prp16 has dual roles in remodeling of the spliceosome in catalytic steps
-
Tseng, C.-K., Liu, H.-L., Cheng, S.-C. DEAH-box ATPase Prp16 has dual roles in remodeling of the spliceosome in catalytic steps. RNA 17, 145-154 (2011).
-
(2011)
RNA
, vol.17
, pp. 145-154
-
-
Tseng, C.-K.1
Liu, H.-L.2
Cheng, S.-C.3
-
45
-
-
0027065506
-
A conformational rearrangement in the spliceosome is dependent on PRP16 and ATP hydrolysis
-
Schwer, B., Guthrie, C. A conformational rearrangement in the spliceosome is dependent on PRP16 and ATP hydrolysis. EMBO J. 11, 5033-5039 (1992).
-
(1992)
EMBO J.
, vol.11
, pp. 5033-5039
-
-
Schwer, B.1
Guthrie, C.2
-
46
-
-
23944469448
-
The Isy1p component of the NineTeen complex interacts with the ATPase Prp16p to regulate the fidelity of pre-mRNA splicing
-
Villa, T., Guthrie, C. The Isy1p component of the NineTeen complex interacts with the ATPase Prp16p to regulate the fidelity of pre-mRNA splicing. Genes Dev. 19, 1894-1904 (2005).
-
(2005)
Genes Dev.
, vol.19
, pp. 1894-1904
-
-
Villa, T.1
Guthrie, C.2
-
47
-
-
0029349060
-
Prp16p, Slu7p, and Prp8p interact with the 3 splice site in two distinct stages during the second catalytic step of pre-mRNA splicing
-
Umen, J. G., Guthrie, C. Prp16p, Slu7p, and Prp8p interact with the 3 splice site in two distinct stages during the second catalytic step of pre-mRNA splicing. RNA 1, 584-597 (1995).
-
(1995)
RNA
, vol.1
, pp. 584-597
-
-
Umen, J.G.1
Guthrie, C.2
-
48
-
-
84894250615
-
Endogenous U2•U5•U6 snRNA complexes in S. Pombe are intron lariat spliceosomes
-
Chen, W. et al. Endogenous U2•U5•U6 snRNA complexes in S. pombe are intron lariat spliceosomes. RNA 20, 308-320 (2014).
-
(2014)
RNA
, vol.20
, pp. 308-320
-
-
Chen, W.1
-
49
-
-
84954550544
-
CryoEM structures of two spliceosomal complexes: Starter and dessert at the spliceosome feast
-
Nguyen, T. H. D. et al. CryoEM structures of two spliceosomal complexes: starter and dessert at the spliceosome feast. Curr. Opin. Struct. Biol. 36, 48-57 (2016).
-
(2016)
Curr. Opin. Struct. Biol.
, vol.36
, pp. 48-57
-
-
Nguyen, T.H.D.1
-
50
-
-
84904513583
-
A homolog of lariat-debranching enzyme modulates turnover of branched RNA
-
Garrey, S. M. et al. A homolog of lariat-debranching enzyme modulates turnover of branched RNA. RNA 20, 1337-1348 (2014).
-
(2014)
RNA
, vol.20
, pp. 1337-1348
-
-
Garrey, S.M.1
-
51
-
-
84893810594
-
RNA polymerase II termination involves C-terminal-domain tyrosine dephosphorylation by CPF subunit Glc7
-
Schreieck, A. et al. RNA polymerase II termination involves C-terminal-domain tyrosine dephosphorylation by CPF subunit Glc7. Nat. Struct. Mol. Biol. 21, 175-179 (2014).
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 175-179
-
-
Schreieck, A.1
-
52
-
-
0022350602
-
Yeast mRNA splicing in vitro
-
Lin, R. J., Newman, A. J., Cheng, S. C., Abelson, J. Yeast mRNA splicing in vitro. J. Biol. Chem. 260, 14780-14792 (1985).
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 14780-14792
-
-
Lin, R.J.1
Newman, A.J.2
Cheng, S.C.3
Abelson, J.4
-
53
-
-
0037068447
-
Comprehensive proteomic analysis of the human spliceosome
-
Zhou, Z., Licklider, L. J., Gygi, S. P., Reed, R. Comprehensive proteomic analysis of the human spliceosome. Nature 419, 182-185 (2002).
-
(2002)
Nature
, vol.419
, pp. 182-185
-
-
Zhou, Z.1
Licklider, L.J.2
Gygi, S.P.3
Reed, R.4
-
54
-
-
84954467080
-
Assembly and dynamics of the U4/U6 di-snRNP by single-molecule FRET
-
Hardin, J. W., Warnasooriya, C., Kondo, Y., Nagai, K., Rueda, D. Assembly and dynamics of the U4/U6 di-snRNP by single-molecule FRET. Nucleic Acids Res. 43, 10963-10974 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 10963-10974
-
-
Hardin, J.W.1
Warnasooriya, C.2
Kondo, Y.3
Nagai, K.4
Rueda, D.5
-
55
-
-
84938513943
-
The architecture of the spliceosomal U4/U6.U5 tri-snRNP
-
Nguyen, T. H. D. et al. The architecture of the spliceosomal U4/U6.U5 tri-snRNP. Nature 523, 47-52 (2015).
-
(2015)
Nature
, vol.523
, pp. 47-52
-
-
Nguyen, T.H.D.1
-
56
-
-
84880848354
-
Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM
-
Li, X. et al. Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM. Nat. Methods 10, 584-590 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 584-590
-
-
Li, X.1
-
57
-
-
84946488108
-
CTFFIND4: Fast and accurate defocus estimation from electron micrographs
-
Rohou, A., Grigorieff, N. CTFFIND4: Fast and accurate defocus estimation from electron micrographs. J. Struct. Biol. 192, 216-221 (2015).
-
(2015)
J. Struct. Biol.
, vol.192
, pp. 216-221
-
-
Rohou, A.1
Grigorieff, N.2
-
58
-
-
84868444740
-
RELION: Implementation of a Bayesian approach to cryo-EM structure determination
-
Scheres, S. H. W. RELION: implementation of a Bayesian approach to cryo-EM structure determination. J. Struct. Biol. 180, 519-530 (2012).
-
(2012)
J. Struct. Biol.
, vol.180
, pp. 519-530
-
-
Scheres, S.H.W.1
-
59
-
-
84922727036
-
Semi-automated selection of cryo-EM particles in RELION-1.3
-
Scheres, S. H. W. Semi-automated selection of cryo-EM particles in RELION-1.3. J. Struct. Biol. 189, 114-122 (2015).
-
(2015)
J. Struct. Biol.
, vol.189
, pp. 114-122
-
-
Scheres, S.H.W.1
-
60
-
-
84955307962
-
Sampling the conformational space of the catalytic subunit of human-secretase
-
Bai, X.-C., Rajendra, E., Yang, G., Shi, Y., Scheres, S. H. W. Sampling the conformational space of the catalytic subunit of human-secretase. eLife 4, 1485 (2015).
-
(2015)
ELife
, vol.4
, pp. 1485
-
-
Bai, X.-C.1
Rajendra, E.2
Yang, G.3
Shi, Y.4
Scheres, S.H.W.5
-
61
-
-
84866078359
-
Prevention of overfitting in cryo-EM structure determination
-
Scheres, S. H. W., Chen, S. Prevention of overfitting in cryo-EM structure determination. Nat. Methods 9, 853-854 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 853-854
-
-
Scheres, S.H.W.1
Chen, S.2
-
62
-
-
84880607763
-
High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy
-
Chen, S. et al. High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy. Ultramicroscopy 135, 24-35 (2013).
-
(2013)
Ultramicroscopy
, vol.135
, pp. 24-35
-
-
Chen, S.1
-
63
-
-
84894623755
-
Quantifying the local resolution of cryo-EM density maps
-
Kucukelbir, A., Sigworth, F. J., Tagare, H. D. Quantifying the local resolution of cryo-EM density maps. Nat. Methods 11, 63-65 (2014).
-
(2014)
Nat. Methods
, vol.11
, pp. 63-65
-
-
Kucukelbir, A.1
Sigworth, F.J.2
Tagare, H.D.3
-
64
-
-
84555189176
-
Structure of the mRNA splicing complex component Cwc2: Insights into RNA recognition
-
Lu, P. et al. Structure of the mRNA splicing complex component Cwc2: insights into RNA recognition. Biochem. J. 441, 591-597 (2012).
-
(2012)
Biochem. J.
, vol.441
, pp. 591-597
-
-
Lu, P.1
-
65
-
-
84923886545
-
113Cd NMR experiments reveal an unusual metal cluster in the solution structure of the yeast splicing protein Bud31p
-
van Roon, A.-M. M. et al. 113Cd NMR experiments reveal an unusual metal cluster in the solution structure of the yeast splicing protein Bud31p. Angew. Chem. Int. Edn Engl. 54, 4861-4864 (2015).
-
(2015)
Angew. Chem. Int. Edn Engl.
, vol.54
, pp. 4861-4864
-
-
Van Roon, A.-M.M.1
-
66
-
-
84904815625
-
SWISS-MODEL: Modelling protein tertiary and quaternary structure using evolutionary information
-
Biasini, M. et al. SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Res. 42, W252-W258 (2014).
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. W252-W258
-
-
Biasini, M.1
-
67
-
-
0043123216
-
GeneSilico protein structure prediction meta-server
-
Kurowski, M. A., Bujnicki, J. M. GeneSilico protein structure prediction meta-server. Nucleic Acids Res. 31, 3305-3307 (2003).
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3305-3307
-
-
Kurowski, M.A.1
Bujnicki, J.M.2
-
68
-
-
0032514483
-
Crystal structure of the spliceosomal U2B"-U2A protein complex bound to a fragment of U2 small nuclear RNA
-
Price, S. R., Evans, P. R., Nagai, K. Crystal structure of the spliceosomal U2B"-U2A protein complex bound to a fragment of U2 small nuclear RNA. Nature 394, 645-650 (1998).
-
(1998)
Nature
, vol.394
, pp. 645-650
-
-
Price, S.R.1
Evans, P.R.2
Nagai, K.3
-
69
-
-
79959946169
-
Cross-linking ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast
-
Kudla, G., Granneman, S., Hahn, D., Beggs, J. D., Tollervey, D. Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast. Proc. Natl Acad. Sci. USA 108, 10010-10015 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 10010-10015
-
-
Kudla, G.1
Granneman, S.2
Hahn, D.3
Beggs, J.D.4
Tollervey, D.5
-
70
-
-
84925156346
-
The I-TASSER Suite: Protein structure and function prediction
-
Yang, J. et al. The I-TASSER Suite: protein structure and function prediction. Nat. Methods 12, 7-8 (2015).
-
(2015)
Nat. Methods
, vol.12
, pp. 7-8
-
-
Yang, J.1
-
71
-
-
77954958169
-
Prp43p contains a processive helicase structural architecture with a specific regulatory domain
-
Walbott, H. et al. Prp43p contains a processive helicase structural architecture with a specific regulatory domain. EMBO J. 29, 2194-2204 (2010).
-
(2010)
EMBO J.
, vol.29
, pp. 2194-2204
-
-
Walbott, H.1
-
72
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G. N., Vagin, A. A., Dodson, E. J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 53, 240-255 (1997).
-
(1997)
Acta Crystallogr. D Biol. Crystallogr.
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
73
-
-
84907007915
-
Conformationindependent structural comparison of macromolecules with ProSMART
-
Nicholls, R. A., Fischer, M., McNicholas, S., Murshudov, G. N. Conformationindependent structural comparison of macromolecules with ProSMART. Acta Crystallogr. D Biol. Crystallogr. 70, 2487-2499 (2014).
-
(2014)
Acta Crystallogr. D Biol. Crystallogr.
, vol.70
, pp. 2487-2499
-
-
Nicholls, R.A.1
Fischer, M.2
McNicholas, S.3
Murshudov, G.N.4
-
74
-
-
84921777915
-
Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions
-
Brown, A. et al. Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions. Acta Crystallogr. D Biol. Crystallogr. 71, 136-153 (2015).
-
(2015)
Acta Crystallogr. D Biol. Crystallogr.
, vol.71
, pp. 136-153
-
-
Brown, A.1
-
75
-
-
33845345287
-
Visualizing density maps with UCSF Chimera
-
Goddard, T. D., Huang, C. C., Ferrin, T. E. Visualizing density maps with UCSF Chimera. J. Struct. Biol. 157, 281-287 (2007).
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 281-287
-
-
Goddard, T.D.1
Huang, C.C.2
Ferrin, T.E.3
-
76
-
-
84868035651
-
Visualizing group II intron catalysis through the stages of splicing
-
Marcia, M., Pyle, A. M. Visualizing group II intron catalysis through the stages of splicing. Cell 151, 497-507 (2012).
-
(2012)
Cell
, vol.151
, pp. 497-507
-
-
Marcia, M.1
Pyle, A.M.2
-
77
-
-
84952638804
-
The exon junction complex as a node of post-transcriptional networks
-
Le Hir, H., Sauliere, J., Wang, Z. The exon junction complex as a node of post-transcriptional networks. Nat. Rev. Mol. Cell Biol. 17, 41-54 (2016).
-
(2016)
Nat. Rev. Mol. Cell Biol.
, vol.17
, pp. 41-54
-
-
Le Hir, H.1
Sauliere, J.2
Wang, Z.3
-
78
-
-
42249093677
-
Isolation of an active step i spliceosome and composition of its RNP core
-
Bessonov, S., Anokhina, M., Will, C. L., Urlaub, H., Lührmann, R. Isolation of an active step I spliceosome and composition of its RNP core. Nature 452, 846-850 (2008).
-
(2008)
Nature
, vol.452
, pp. 846-850
-
-
Bessonov, S.1
Anokhina, M.2
Will, C.L.3
Urlaub, H.4
Lührmann, R.5
-
79
-
-
84871825274
-
Human spliceosomal protein CWC22 plays a role in coupling splicing to exon junction complex deposition and nonsense-mediated decay
-
Alexandrov, A., Colognori, D., Shu, M.-D., Steitz, J. A. Human spliceosomal protein CWC22 plays a role in coupling splicing to exon junction complex deposition and nonsense-mediated decay. Proc. Natl Acad. Sci. USA 109, 21313-21318 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 21313-21318
-
-
Alexandrov, A.1
Colognori, D.2
Shu, M.-D.3
Steitz, J.A.4
-
80
-
-
84866916889
-
CWC22 connects pre-mRNA splicing and exon junction complex assembly
-
Steckelberg, A.-L., Boehm, V., Gromadzka, A. M., Gehring, N. H. CWC22 connects pre-mRNA splicing and exon junction complex assembly. Cell Reports 2, 454-461 (2012).
-
(2012)
Cell Reports
, vol.2
, pp. 454-461
-
-
Steckelberg, A.-L.1
Boehm, V.2
Gromadzka, A.M.3
Gehring, N.H.4
-
81
-
-
84867232894
-
Human CWC22 escorts the helicase eIF4AIII to spliceosomes and promotes exon junction complex assembly
-
Barbosa, I. et al. Human CWC22 escorts the helicase eIF4AIII to spliceosomes and promotes exon junction complex assembly. Nat. Struct. Mol. Biol. 19, 983-990 (2012).
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 983-990
-
-
Barbosa, I.1
-
82
-
-
33747182255
-
The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA
-
Bono, F., Ebert, J., Lorentzen, E., Conti, E. The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA. Cell 126, 713-725 (2006).
-
(2006)
Cell
, vol.126
, pp. 713-725
-
-
Bono, F.1
Ebert, J.2
Lorentzen, E.3
Conti, E.4
-
83
-
-
33749332762
-
Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA
-
Ersen, C. B. F. et al. Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA. Science 313, 1968-1972 (2006).
-
(2006)
Science
, vol.313
, pp. 1968-1972
-
-
Ersen, C.B.F.1
-
84
-
-
3242886389
-
MOLPROBITY: Structure validation and all-atom contact analysis for nucleic acids and their complexes
-
Davis, I. W., Murray, L. W., Richardson, J. S., Richardson, D. C. MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes. Nucleic Acids Res. 32, W615-W619 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. W615-W619
-
-
Davis, I.W.1
Murray, L.W.2
Richardson, J.S.3
Richardson, D.C.4
|