-
1
-
-
0021226996
-
Messenger RNA splicing in vitro: An excised intervening sequence and a potential intermediate
-
Grabowski, P. J., Padgett, R. A. & Sharp, P. A. Messenger RNA splicing in vitro: an excised intervening sequence and a potential intermediate. Cell 37, 415-427 (1984).
-
(1984)
Cell
, vol.37
, pp. 415-427
-
-
Grabowski, P.J.1
Padgett, R.A.2
Sharp, P.A.3
-
2
-
-
0021235185
-
Lariat RNA's as intermediates and products in the splicing of messenger RNA precursors
-
Padgett, R. A., Konarska, M. M., Grabowski, P. J., Hardy, S. F. & Sharp, P. A. Lariat RNA's as intermediates and products in the splicing of messenger RNA precursors. Science 225, 898-903 (1984).
-
(1984)
Science
, vol.225
, pp. 898-903
-
-
Padgett, R.A.1
Konarska, M.M.2
Grabowski, P.J.3
Hardy, S.F.4
Sharp, P.A.5
-
3
-
-
0021995992
-
Characterization of the branch site in lariat RNAs produced by splicing of mRNA precursors
-
Konarska, M. M., Grabowski, P. J., Padgett, R. A. & Sharp, P. A. Characterization of the branch site in lariat RNAs produced by splicing of mRNA precursors. Nature 313, 552-557 (1985).
-
(1985)
Nature
, vol.313
, pp. 552-557
-
-
Konarska, M.M.1
Grabowski, P.J.2
Padgett, R.A.3
Sharp, P.A.4
-
4
-
-
0022551978
-
A self-splicing RNA excises an intron lariat
-
Peebles, C. L. et al. A self-splicing RNA excises an intron lariat. Cell 44, 213-223 (1986).
-
(1986)
Cell
, vol.44
, pp. 213-223
-
-
Peebles, C.L.1
-
5
-
-
0022550426
-
Excised group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro
-
van der Veen, R. et al. Excised group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro. Cell 44, 225-234 (1986).
-
(1986)
Cell
, vol.44
, pp. 225-234
-
-
Van Der Veen, R.1
-
6
-
-
26244463717
-
A point mutation in the lariat branch point of intron 6 of NPC1 as the cause of abnormal pre-mRNA splicing in Niemann-Pick type C disease
-
Di Leo, E. et al. A point mutation in the lariat branch point of intron 6 of NPC1 as the cause of abnormal pre-mRNA splicing in Niemann-Pick type C disease. Hum. Mutat. 24, 440 (2004).
-
(2004)
Hum. Mutat.
, vol.24
, pp. 440
-
-
Di Leo, E.1
-
7
-
-
84873629024
-
Crystal structure of Prp8 reveals active site cavity of the spliceosome
-
Galej, W. P., Oubridge, C., Newman, A. J. & Nagai, K. Crystal structure of Prp8 reveals active site cavity of the spliceosome. Nature 493, 638-643 (2013).
-
(2013)
Nature
, vol.493
, pp. 638-643
-
-
Galej, W.P.1
Oubridge, C.2
Newman, A.J.3
Nagai, K.4
-
8
-
-
84887624226
-
RNA catalyses nuclear pre-mRNA splicing
-
Fica, S. M. et al. RNA catalyses nuclear pre-mRNA splicing. Nature 503, 229-234 (2013).
-
(2013)
Nature
, vol.503
, pp. 229-234
-
-
Fica, S.M.1
-
9
-
-
41749109563
-
Crystal structure of a self-spliced group II intron
-
Toor, N., Keating, K. S., Taylor, S. D. & Pyle, A. M. Crystal structure of a self-spliced group II intron. Science 320, 77-82 (2008).
-
(2008)
Science
, vol.320
, pp. 77-82
-
-
Toor, N.1
Keating, K.S.2
Taylor, S.D.3
Pyle, A.M.4
-
11
-
-
0034910710
-
Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases
-
Toor, N., Hausner, G. & Zimmerly, S. Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases. RNA 7, 1142-1152 (2001).
-
(2001)
RNA
, vol.7
, pp. 1142-1152
-
-
Toor, N.1
Hausner, G.2
Zimmerly, S.3
-
12
-
-
0024428420
-
Comparative and functional anatomy of group II catalytic introns - A review
-
Michel, F., Umesono, K. & Ozeki, H. Comparative and functional anatomy of group II catalytic introns-a review. Gene 82, 5-30 (1989).
-
(1989)
Gene
, vol.82
, pp. 5-30
-
-
Michel, F.1
Umesono, K.2
Ozeki, H.3
-
13
-
-
0031555476
-
A group II self-splicing intron from the brown alga Pylaiella littoralis is active at unusually low magnesium concentrations and forms populations of molecules with a uniform conformation
-
Costa, M., Fontaine, J. M., Loiseaux-de Goër, S. & Michel, F. A group II self-splicing intron from the brown alga Pylaiella littoralis is active at unusually low magnesium concentrations and forms populations of molecules with a uniform conformation. J. Mol. Biol. 274, 353-364 (1997).
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 353-364
-
-
Costa, M.1
Fontaine, J.M.2
Loiseaux-De Goër, S.3
Michel, F.4
-
14
-
-
0037743892
-
Retroids in archaea: Phylogeny and lateral origins
-
Rest, J. S. & Mindell, D. P. Retroids in archaea: phylogeny and lateral origins. Mol. Biol. Evol. 20, 1134-1142 (2003).
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1134-1142
-
-
Rest, J.S.1
Mindell, D.P.2
-
15
-
-
33845895973
-
Self-splicing of a group IIC intron: 5′ exon recognition and alternative 5′ splicing events implicate the stem-loop motif of a transcriptional terminator
-
Toor, N., Robart, A. R., Christianson, J. & Zimmerly, S. Self-splicing of a group IIC intron: 5′ exon recognition and alternative 5′ splicing events implicate the stemloop motif of a transcriptional terminator. Nucleic Acids Res. 34, 6461-6471 (2006).
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 6461-6471
-
-
Toor, N.1
Robart, A.R.2
Christianson, J.3
Zimmerly, S.4
-
16
-
-
0032404048
-
Defining functional groups, core structural features and inter-domain tertiary contacts essential for group II intron self-splicing: A NAIM analysis
-
Boudvillain, M. & Pyle, A. M. Defining functional groups, core structural features and inter-domain tertiary contacts essential for group II intron self-splicing: a NAIM analysis. EMBO J. 17, 7091-7104 (1998).
-
(1998)
EMBO J.
, vol.17
, pp. 7091-7104
-
-
Boudvillain, M.1
Pyle, A.M.2
-
17
-
-
0025344901
-
Base-pairing interactions involving the 5′ and 3′-terminal nucleotides of group II self-splicing introns
-
Jacquier, A. & Michel, F. Base-pairing interactions involving the 5′ and 3′-terminal nucleotides of group II self-splicing introns. J. Mol. Biol. 213, 437-447 (1990).
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 437-447
-
-
Jacquier, A.1
Michel, F.2
-
18
-
-
44149103156
-
A conserved element that stabilizes the group II intron active site
-
Fedorova, O. & Pyle, A. M. A conserved element that stabilizes the group II intron active site. RNA 14, 1048-1056 (2008).
-
(2008)
RNA
, vol.14
, pp. 1048-1056
-
-
Fedorova, O.1
Pyle, A.M.2
-
19
-
-
0038799763
-
Domains 2 and 3 interact to form critical elements of the group II intron active site
-
Fedorova, O., Mitros, T. & Pyle, A. M. Domains 2 and 3 interact to form critical elements of the group II intron active site. J. Mol. Biol. 330, 197-209 (2003).
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 197-209
-
-
Fedorova, O.1
Mitros, T.2
Pyle, A.M.3
-
20
-
-
0030015953
-
An RNA conformational change between the two chemical steps of group II self-splicing
-
Chanfreau, G. & Jacquier, A. An RNA conformational change between the two chemical steps of group II self-splicing. EMBO J. 15, 3466-3476 (1996).
-
(1996)
EMBO J.
, vol.15
, pp. 3466-3476
-
-
Chanfreau, G.1
Jacquier, A.2
-
21
-
-
3042848954
-
Crystal structure of a self-splicing group I intron with both exons
-
Adams, P. L., Stahley, M. R., Kosek, A. B., Wang, J. & Strobel, S. A. Crystal structure of a self-splicing group I intron with both exons. Nature 430, 45-50 (2004).
-
(2004)
Nature
, vol.430
, pp. 45-50
-
-
Adams, P.L.1
Stahley, M.R.2
Kosek, A.B.3
Wang, J.4
Strobel, S.A.5
-
22
-
-
79961030006
-
Linking the branchpoint helix to a newly found receptor allows lariat formation by a group II intron
-
Li, C. F., Costa, M. & Michel, F. Linking the branchpoint helix to a newly found receptor allows lariat formation by a group II intron. EMBO J. 30, 3040-3051 (2011).
-
(2011)
EMBO J.
, vol.30
, pp. 3040-3051
-
-
Li, C.F.1
Costa, M.2
Michel, F.3
-
23
-
-
4344569647
-
The contribution of metal ions to the structural stability of the large ribosomal subunit
-
Klein, D. J., Moore, P. B. & Steitz, T. A. The contribution of metal ions to the structural stability of the large ribosomal subunit. RNA 10, 1366-1379 (2004).
-
(2004)
RNA
, vol.10
, pp. 1366-1379
-
-
Klein, D.J.1
Moore, P.B.2
Steitz, T.A.3
-
24
-
-
84901929739
-
Evidence for a group II intron-like catalytic triplex in the spliceosome
-
Fica, S. M., Mefford, M. A., Piccirilli, J. A. & Staley, J. P. Evidence for a group II intron-like catalytic triplex in the spliceosome. Nature Struct. Mol. Biol. 21, 464-471 (2014).
-
(2014)
Nature Struct. Mol. Biol.
, vol.21
, pp. 464-471
-
-
Fica, S.M.1
Mefford, M.A.2
Piccirilli, J.A.3
Staley, J.P.4
-
25
-
-
84868035651
-
Visualizing group II intron catalysis through the stages of splicing
-
Marcia, M. & Pyle, A. M. Visualizing group II intron catalysis through the stages of splicing. Cell 151, 497-507 (2012).
-
(2012)
Cell
, vol.151
, pp. 497-507
-
-
Marcia, M.1
Pyle, A.M.2
-
26
-
-
0028205987
-
Branch nucleophile selection in pre-mRNA splicing: Evidence for the bulged duplex model
-
Query, C. C., Moore, M. J. & Sharp, P. A. Branch nucleophile selection in pre-mRNA splicing: evidence for the bulged duplex model. Genes Dev. 8, 587-597 (1994).
-
(1994)
Genes Dev.
, vol.8
, pp. 587-597
-
-
Query, C.C.1
Moore, M.J.2
Sharp, P.A.3
-
27
-
-
84887115772
-
RNA structure analysis of human spliceosomes reveals a compact 3D arrangement of snRNAs at the catalytic core
-
Anokhina, M. et al. RNA structure analysis of human spliceosomes reveals a compact 3D arrangement of snRNAs at the catalytic core. EMBO J. 32, 2804-2818 (2013).
-
(2013)
EMBO J.
, vol.32
, pp. 2804-2818
-
-
Anokhina, M.1
-
28
-
-
0021868427
-
A point mutation in the conserved hexanucleotide at a yeast 5′ splice junction uncouples recognition, cleavage, and ligation
-
Parker, R. & Guthrie, C. A point mutation in the conserved hexanucleotide at a yeast 5′ splice junction uncouples recognition, cleavage, and ligation. Cell 41, 107-118 (1985).
-
(1985)
Cell
, vol.41
, pp. 107-118
-
-
Parker, R.1
Guthrie, C.2
-
29
-
-
0027739852
-
Mutations in U6 snRNA that alter splice site specificity: Implications for the active site
-
Lesser, C. F. & Guthrie, C. Mutations in U6 snRNA that alter splice site specificity: implications for the active site. Science 262, 1982-1988 (1993).
-
(1993)
Science
, vol.262
, pp. 1982-1988
-
-
Lesser, C.F.1
Guthrie, C.2
-
30
-
-
60849089911
-
The linear form of a group II intron catalyzes efficient autocatalytic reverse splicing, establishing a potential for mobility
-
Roitzsch, M. & Pyle, A. M. The linear form of a group II intron catalyzes efficient autocatalytic reverse splicing, establishing a potential for mobility. RNA 15, 473-482 (2009).
-
(2009)
RNA
, vol.15
, pp. 473-482
-
-
Roitzsch, M.1
Pyle, A.M.2
-
31
-
-
0029931406
-
Efficient integration of an intron RNA into double-stranded DNA by reverse splicing
-
Yang, J., Zimmerly, S., Perlman, P. S. & Lambowitz, A. M. Efficient integration of an intron RNA into double-stranded DNA by reverse splicing. Nature 381, 332-335 (1996).
-
(1996)
Nature
, vol.381
, pp. 332-335
-
-
Yang, J.1
Zimmerly, S.2
Perlman, P.S.3
Lambowitz, A.M.4
-
33
-
-
46449086933
-
Both catalytic steps of nuclear pre-mRNA splicing are reversible
-
Tseng, C. K. & Cheng, S. C. Both catalytic steps of nuclear pre-mRNA splicing are reversible. Science 320, 1782-1784 (2008).
-
(2008)
Science
, vol.320
, pp. 1782-1784
-
-
Tseng, C.K.1
Cheng, S.C.2
-
34
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (1997).
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
36
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D 66, 213-221 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
-
37
-
-
37549039510
-
A short history of SHELX
-
Sheldrick, G. M. A short history of SHELX. Acta Crystallogr. A 64, 112-122 (2008).
-
(2008)
Acta Crystallogr. A
, vol.64
, pp. 112-122
-
-
Sheldrick, G.M.1
-
38
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley, P. & Cowtan, K. Coot: model-building tools for molecular graphics. Acta Crystallogr. D 60, 2126-2132 (2004).
-
(2004)
Acta Crystallogr. D
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
39
-
-
84864876676
-
RCrane: Semi-automated RNA model building
-
Keating, K. S. & Pyle, A. M. RCrane: semi-automated RNA model building. Acta Crystallogr. D 68, 985-995 (2012).
-
(2012)
Acta Crystallogr. D
, vol.68
, pp. 985-995
-
-
Keating, K.S.1
Pyle, A.M.2
-
40
-
-
14844321328
-
Refinement of severely incomplete structures with maximum likelihood in BUSTER-TNT
-
Blanc, E. et al. Refinement of severely incomplete structures with maximum likelihood in BUSTER-TNT. Acta Crystallogr. D 60, 2210-2221 (2004).
-
(2004)
Acta Crystallogr. D
, vol.60
, pp. 2210-2221
-
-
Blanc, E.1
-
41
-
-
77951623055
-
Super-resolution biomolecular crystallography with low-resolution data
-
Schroder, G. F., Levitt, M. & Brunger, A. T. Super-resolution biomolecular crystallography with low-resolution data. Nature 464, 1218-1222 (2010).
-
(2010)
Nature
, vol.464
, pp. 1218-1222
-
-
Schroder, G.F.1
Levitt, M.2
Brunger, A.T.3
-
42
-
-
84871957573
-
Correcting pervasive errors in RNA crystallography through enumerative structure prediction
-
Chou, F. C., Sripakdeevong, P., Dibrov, S. M., Hermann, T. & Das, R. Correcting pervasive errors in RNA crystallography through enumerative structure prediction. Nature Methods 10, 74-76 (2013).
-
(2013)
Nature Methods
, vol.10
, pp. 74-76
-
-
Chou, F.C.1
Sripakdeevong, P.2
Dibrov, S.M.3
Hermann, T.4
Das, R.5
-
43
-
-
84884682632
-
Collaboration gets the most out of software
-
Morin, A. et al. Collaboration gets the most out of software. eLife 2, e01456 (2013).
-
(2013)
eLife
, vol.2
, pp. e01456
-
-
Morin, A.1
-
44
-
-
0027451435
-
Interaction of intronic boundaries is required for the second splicing step efficiency of a group II intron
-
Chanfreau, G. & Jacquier, A. Interaction of intronic boundaries is required for the second splicing step efficiency of a group II intron. EMBO J. 12, 5173-5180 (1993).
-
(1993)
EMBO J
, vol.12
, pp. 5173-5180
-
-
Chanfreau, G.1
Jacquier, A.2
-
45
-
-
0027408848
-
Evidence for an essential non-Watson-Crick interaction between the first and last nucleotides of a nuclear pre-mRNA intron
-
Parker, R. & Siliciano, P. G. Evidence for an essential non-Watson-Crick interaction between the first and last nucleotides of a nuclear pre-mRNA intron. Nature 361, 660-662 (1993).
-
(1993)
Nature
, vol.361
, pp. 660-662
-
-
Parker, R.1
Siliciano, P.G.2
-
46
-
-
0031790171
-
A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor
-
Basu, S. et al. A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor. Nature Struct. Biol. 5, 986-992 (1998).
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 986-992
-
-
Basu, S.1
|