-
1
-
-
7444222893
-
Signaling control of memory T cell generation and function
-
Chandok,M.R. and Farber,D.L. (2004) Signaling control of memory T cell generation and function. Semin. Immunol., 16, 285-293.
-
(2004)
Semin. Immunol.
, vol.16
, pp. 285-293
-
-
Chandok, M.R.1
Farber, D.L.2
-
2
-
-
67650752137
-
T cell activation
-
Smith-Garvin,J.E., Koretzky,G.A. and Jordan,M.S. (2009) T cell activation. Annu. Rev. Immunol., 27, 591-619.
-
(2009)
Annu. Rev. Immunol.
, vol.27
, pp. 591-619
-
-
Smith-Garvin, J.E.1
Koretzky, G.A.2
Jordan, M.S.3
-
3
-
-
0035971436
-
Partners in transcription: NFAT and AP-1
-
Macian,F., Lopez-Rodriguez,C. and Rao,A. (2001) Partners in transcription: NFAT and AP-1. Oncogene, 20, 2476-2489.
-
(2001)
Oncogene
, vol.20
, pp. 2476-2489
-
-
Macian, F.1
Lopez-Rodriguez, C.2
Rao, A.3
-
4
-
-
84872706701
-
IL-2 Expression in Activated Human Memory FOXP3(+) Cells Critically Depends on the Cellular Levels of FOXP3 as Well as of Four Transcription Factors of T Cell Activation
-
Bendfeldt,H., Benary,M., Scheel,T., Steinbrink,K., Radbruch,A., Herzel,H. and Baumgrass,R. (2012) IL-2 Expression in Activated Human Memory FOXP3(+) Cells Critically Depends on the Cellular Levels of FOXP3 as Well as of Four Transcription Factors of T Cell Activation. Front. Immunol., 3, 264.
-
(2012)
Front. Immunol.
, vol.3
, pp. 264
-
-
Bendfeldt, H.1
Benary, M.2
Scheel, T.3
Steinbrink, K.4
Radbruch, A.5
Herzel, H.6
Baumgrass, R.7
-
5
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski,A., Cuddapah,S., Cui,K., Roh,T.Y., Schones,D.E., Wang,Z., Wei,G., Chepelev,I. and Zhao,K. (2007) High-resolution profiling of histone methylations in the human genome. Cell, 129, 823-837.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
6
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen,T.S., Ku,M., Jaffe,D.B., Issac,B., Lieberman,E., Giannoukos,G., Alvarez,P., Brockman,W., Kim,T.K., Koche,R.P. et al. (2007) Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature, 448, 553-560.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.K.9
Koche, R.P.10
-
7
-
-
46249112085
-
Combinatorial patterns of histone acetylations and methylations in the human genome
-
Wang,Z., Zang,C., Rosenfeld,J.A., Schones,D.E., Barski,A., Cuddapah,S., Cui,K., Roh,T.Y., Peng,W., Zhang,M.Q. et al. (2008) Combinatorial patterns of histone acetylations and methylations in the human genome. Nat. Genet., 40, 897-903.
-
(2008)
Nat. Genet.
, vol.40
, pp. 897-903
-
-
Wang, Z.1
Zang, C.2
Rosenfeld, J.A.3
Schones, D.E.4
Barski, A.5
Cuddapah, S.6
Cui, K.7
Roh, T.Y.8
Peng, W.9
Zhang, M.Q.10
-
8
-
-
84857707318
-
ChromHMM: Automating chromatin-state discovery and characterization
-
Ernst,J. and Kellis,M. (2012) ChromHMM: automating chromatin-state discovery and characterization. Nat. Methods, 9, 215-216.
-
(2012)
Nat. Methods
, vol.9
, pp. 215-216
-
-
Ernst, J.1
Kellis, M.2
-
9
-
-
58049191558
-
Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation
-
Cui,K., Zang,C., Roh,T.Y., Schones,D.E., Childs,R.W., Peng,W. and Zhao,K. (2009) Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell, 4, 80-93.
-
(2009)
Cell Stem Cell
, vol.4
, pp. 80-93
-
-
Cui, K.1
Zang, C.2
Roh, T.Y.3
Schones, D.E.4
Childs, R.W.5
Peng, W.6
Zhao, K.7
-
10
-
-
51649129596
-
Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors
-
Mohn,F., Weber,M., Rebhan,M., Roloff,T.C., Richter,J., Stadler,M.B., Bibel,M. and Schubeler,D. (2008) Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors. Mol. Cell, 30, 755-766.
-
(2008)
Mol. Cell
, vol.30
, pp. 755-766
-
-
Mohn, F.1
Weber, M.2
Rebhan, M.3
Roloff, T.C.4
Richter, J.5
Stadler, M.B.6
Bibel, M.7
Schubeler, D.8
-
11
-
-
70349643725
-
Chromatin poises miRNA-and protein-coding genes for expression
-
Barski,A., Jothi,R., Cuddapah,S., Cui,K., Roh,T.Y., Schones,D.E. and Zhao,K. (2009) Chromatin poises miRNA-and protein-coding genes for expression. Genome Res., 19, 1742-1751.
-
(2009)
Genome Res.
, vol.19
, pp. 1742-1751
-
-
Barski, A.1
Jothi, R.2
Cuddapah, S.3
Cui, K.4
Roh, T.Y.5
Schones, D.E.6
Zhao, K.7
-
12
-
-
77953540361
-
Epigenomics of T cell activation, differentiation, and memory
-
Cuddapah,S., Barski,A. and Zhao,K. (2010) Epigenomics of T cell activation, differentiation, and memory. Curr. Opin. Immunol., 22, 341-347.
-
(2010)
Curr. Opin. Immunol.
, vol.22
, pp. 341-347
-
-
Cuddapah, S.1
Barski, A.2
Zhao, K.3
-
13
-
-
75349108276
-
Defining the chromatin signature of inducible genes in T cells
-
Lim,P.S., Hardy,K., Bunting,K.L., Ma,L., Peng,K., Chen,X. and Shannon,M.F. (2009) Defining the chromatin signature of inducible genes in T cells. Genome Biol., 10, R107.
-
(2009)
Genome Biol.
, vol.10
, pp. R107
-
-
Lim, P.S.1
Hardy, K.2
Bunting, K.L.3
Ma, L.4
Peng, K.5
Chen, X.6
Shannon, M.F.7
-
14
-
-
1942533477
-
Detection and evaluation of intron retention events in the human transcriptome
-
Galante,P.A., Sakabe,N.J., Kirschbaum-Slager,N. and de Souza,S.J. (2004) Detection and evaluation of intron retention events in the human transcriptome. RNA, 10, 757-765.
-
(2004)
RNA
, vol.10
, pp. 757-765
-
-
Galante, P.A.1
Sakabe, N.J.2
Kirschbaum-Slager, N.3
De Souza, S.J.4
-
15
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang,E.T., Sandberg,R., Luo,S., Khrebtukova,I., Zhang,L., Mayr,C., Kingsmore,S.F., Schroth,G.P. and Burge,C.B. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature, 456, 470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
16
-
-
77952029221
-
Deciphering the splicing code
-
Barash,Y., Calarco,J.A., Gao,W., Pan,Q., Wang,X., Shai,O., Blencowe,B.J. and Frey,B.J. (2010) Deciphering the splicing code. Nature, 465, 53-59.
-
(2010)
Nature
, vol.465
, pp. 53-59
-
-
Barash, Y.1
Calarco, J.A.2
Gao, W.3
Pan, Q.4
Wang, X.5
Shai, O.6
Blencowe, B.J.7
Frey, B.J.8
-
17
-
-
75849145292
-
Expansion of the eukaryotic proteome by alternative splicing
-
Nilsen,T.W. and Graveley,B.R. (2010) Expansion of the eukaryotic proteome by alternative splicing. Nature, 463, 457-463.
-
(2010)
Nature
, vol.463
, pp. 457-463
-
-
Nilsen, T.W.1
Graveley, B.R.2
-
18
-
-
84920460444
-
Detained introns are a novel, widespread class of post-transcriptionally spliced introns
-
Boutz,P.L., Bhutkar,A. and Sharp,P.A. (2015) Detained introns are a novel, widespread class of post-transcriptionally spliced introns. Genes Dev., 29, 63-80.
-
(2015)
Genes Dev.
, vol.29
, pp. 63-80
-
-
Boutz, P.L.1
Bhutkar, A.2
Sharp, P.A.3
-
19
-
-
84919923534
-
Widespread intron retention in mammals functionally tunes transcriptomes
-
Braunschweig,U., Barbosa-Morais,N.L., Pan,Q., Nachman,E.N., Alipanahi,B., Gonatopoulos-Pournatzis,T., Frey,B., Irimia,M. and Blencowe,B.J. (2014) Widespread intron retention in mammals functionally tunes transcriptomes. Genome Res., 24, 1774-1786.
-
(2014)
Genome Res.
, vol.24
, pp. 1774-1786
-
-
Braunschweig, U.1
Barbosa-Morais, N.L.2
Pan, Q.3
Nachman, E.N.4
Alipanahi, B.5
Gonatopoulos-Pournatzis, T.6
Frey, B.7
Irimia, M.8
Blencowe, B.J.9
-
20
-
-
84966344016
-
A dynamic intron retention program enriched in RNA processing genes regulates gene expression during terminal erythropoiesis
-
Pimentel,H., Parra,M., Gee,S.L., Mohandas,N., Pachter,L. and Conboy,J.G. (2016) A dynamic intron retention program enriched in RNA processing genes regulates gene expression during terminal erythropoiesis. Nucleic Acids Res., 44, 838-851.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. 838-851
-
-
Pimentel, H.1
Parra, M.2
Gee, S.L.3
Mohandas, N.4
Pachter, L.5
Conboy, J.G.6
-
21
-
-
84881159187
-
Orchestrated intron retention regulates normal granulocyte differentiation
-
Wong,J.J., Ritchie,W., Ebner,O.A., Selbach,M., Wong,J.W., Huang,Y., Gao,D., Pinello,N., Gonzalez,M., Baidya,K. et al. (2013) Orchestrated intron retention regulates normal granulocyte differentiation. Cell, 154, 583-595.
-
(2013)
Cell
, vol.154
, pp. 583-595
-
-
Wong, J.J.1
Ritchie, W.2
Ebner, O.A.3
Selbach, M.4
Wong, J.W.5
Huang, Y.6
Gao, D.7
Pinello, N.8
Gonzalez, M.9
Baidya, K.10
-
22
-
-
84893016210
-
The RNA-binding protein hnRNPLL induces a T cell alternative splicing program delineated by differential intron retention in polyadenylated RNA
-
Cho,V., Mei,Y., Sanny,A., Chan,S., Enders,A., Bertram,E.M., Tan,A., Goodnow,C.C. and Andrews,T.D. (2014) The RNA-binding protein hnRNPLL induces a T cell alternative splicing program delineated by differential intron retention in polyadenylated RNA. Genome Biol., 15, R26.
-
(2014)
Genome Biol.
, vol.15
, pp. R26
-
-
Cho, V.1
Mei, Y.2
Sanny, A.3
Chan, S.4
Enders, A.5
Bertram, E.M.6
Tan, A.7
Goodnow, C.C.8
Andrews, T.D.9
-
23
-
-
84861778204
-
Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention
-
Yap,K., Lim,Z.Q., Khandelia,P., Friedman,B. and Makeyev,E.V. (2012) Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention. Genes Dev., 26, 1209-1223.
-
(2012)
Genes Dev.
, vol.26
, pp. 1209-1223
-
-
Yap, K.1
Lim, Z.Q.2
Khandelia, P.3
Friedman, B.4
Makeyev, E.V.5
-
24
-
-
84933515376
-
Widespread intron retention diversifies most cancer transcriptomes
-
Dvinge,H. and Bradley,R.K. (2015) Widespread intron retention diversifies most cancer transcriptomes. Genome Med., 7, 45.
-
(2015)
Genome Med.
, vol.7
, pp. 45
-
-
Dvinge, H.1
Bradley, R.K.2
-
25
-
-
18944365572
-
Negative control contributes to an extensive program of meiotic splicing in fission yeast
-
Averbeck,N., Sunder,S., Sample,N., Wise,J.A. and Leatherwood,J. (2005) Negative control contributes to an extensive program of meiotic splicing in fission yeast. Mol. Cell, 18, 491-498.
-
(2005)
Mol. Cell
, vol.18
, pp. 491-498
-
-
Averbeck, N.1
Sunder, S.2
Sample, N.3
Wise, J.A.4
Leatherwood, J.5
-
26
-
-
80054680031
-
Introns within ribosomal protein genes regulate the production and function of yeast ribosomes
-
Parenteau,J., Durand,M., Morin,G., Gagnon,J., Lucier,J.F., Wellinger,R.J., Chabot,B. and Elela,S.A. (2011) Introns within ribosomal protein genes regulate the production and function of yeast ribosomes. Cell, 147, 320-331.
-
(2011)
Cell
, vol.147
, pp. 320-331
-
-
Parenteau, J.1
Durand, M.2
Morin, G.3
Gagnon, J.4
Lucier, J.F.5
Wellinger, R.J.6
Chabot, B.7
Elela, S.A.8
-
27
-
-
78650861843
-
The prevalence and regulation of antisense transcripts in Schizosaccharomyces pombe
-
Ni,T., Tu,K., Wang,Z., Song,S., Wu,H., Xie,B., Scott,K.C., Grewal,S.I., Gao,Y. and Zhu,J. (2010) The prevalence and regulation of antisense transcripts in Schizosaccharomyces pombe. PloS One, 5, e15271.
-
(2010)
PloS One
, vol.5
, pp. e15271
-
-
Ni, T.1
Tu, K.2
Wang, Z.3
Song, S.4
Wu, H.5
Xie, B.6
Scott, K.C.7
Grewal, S.I.8
Gao, Y.9
Zhu, J.10
-
28
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li,H. and Durbin,R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
29
-
-
67650711619
-
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
-
Zang,C.Z., Schones,D.E., Zeng,C., Cui,K.R., Zhao,K.J. and Peng,W.Q. (2009) A clustering approach for identification of enriched domains from histone modification ChIP-Seq data. Bioinformatics, 25, 1952-1958.
-
(2009)
Bioinformatics
, vol.25
, pp. 1952-1958
-
-
Zang, C.Z.1
Schones, D.E.2
Zeng, C.3
Cui, K.R.4
Zhao, K.J.5
Peng, W.Q.6
-
30
-
-
84887214395
-
Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition
-
Maunakea,A.K., Chepelev,I., Cui,K.R. and Zhao,K.J. (2013) Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition. Cell Res., 23, 1256-1269.
-
(2013)
Cell Res.
, vol.23
, pp. 1256-1269
-
-
Maunakea, A.K.1
Chepelev, I.2
Cui, K.R.3
Zhao, K.J.4
-
31
-
-
84872202296
-
Impaired proteasome function activates GATA3 in T cells and upregulates CTLA-4: Relevance for Sezary syndrome
-
Gibson,H.M., Mishra,A., Chan,D.V., Hake,T.S., Porcu,P. and Wong,H.K. (2012) Impaired proteasome function activates GATA3 in T cells and upregulates CTLA-4: relevance for Sezary syndrome. J. Invest. Dermatol., 133, 249-257.
-
(2012)
J. Invest. Dermatol.
, vol.133
, pp. 249-257
-
-
Gibson, H.M.1
Mishra, A.2
Chan, D.V.3
Hake, T.S.4
Porcu, P.5
Wong, H.K.6
-
32
-
-
0031985626
-
Role of proteasomes in T cell activation and proliferation
-
Wang,X., Luo,H., Chen,H., Duguid,W. and Wu,J. (1998) Role of proteasomes in T cell activation and proliferation. J. Immunol., 160, 788-801.
-
(1998)
J. Immunol.
, vol.160
, pp. 788-801
-
-
Wang, X.1
Luo, H.2
Chen, H.3
Duguid, W.4
Wu, J.5
-
33
-
-
30044447015
-
Differential effects of proteasome inhibitors on cell cycle and apoptotic pathways in human YT and Jurkat cells
-
Lu,M., Dou,Q.P., Kitson,R.P., Smith,D.M. and Goldfarb,R.H. (2006) Differential effects of proteasome inhibitors on cell cycle and apoptotic pathways in human YT and Jurkat cells. J. Cell Biochem., 97, 122-134.
-
(2006)
J. Cell Biochem.
, vol.97
, pp. 122-134
-
-
Lu, M.1
Dou, Q.P.2
Kitson, R.P.3
Smith, D.M.4
Goldfarb, R.H.5
-
34
-
-
43749098729
-
Proteasome inhibition suppresses essential immune functions of human CD4(+) T cells
-
Berges,C., Haberstock,H., Fuchs,D., Miltz,M., Sadeghi,M., Opelz,G., Daniel,V. and Naujokat,C. (2008) Proteasome inhibition suppresses essential immune functions of human CD4(+) T cells. Immunology, 124, 234-246.
-
(2008)
Immunology
, vol.124
, pp. 234-246
-
-
Berges, C.1
Haberstock, H.2
Fuchs, D.3
Miltz, M.4
Sadeghi, M.5
Opelz, G.6
Daniel, V.7
Naujokat, C.8
-
35
-
-
77954677747
-
The proteasome inhibitor bortezomib inhibits T cell-dependent inflammatory responses
-
Yanaba,K., Yoshizaki,A., Muroi,E., Hara,T., Ogawa,F., Shimizu,K. and Sato,S. (2010) The proteasome inhibitor bortezomib inhibits T cell-dependent inflammatory responses. J. Leukoc. Biol., 88, 117-122.
-
(2010)
J. Leukoc. Biol.
, vol.88
, pp. 117-122
-
-
Yanaba, K.1
Yoshizaki, A.2
Muroi, E.3
Hara, T.4
Ogawa, F.5
Shimizu, K.6
Sato, S.7
-
36
-
-
0028029813
-
Activation of JAK kinases and STAT proteins by interleukin-2 and interferon alpha, but not the T cell antigen receptor, in human T lymphocytes
-
Beadling,C., Guschin,D., Witthuhn,B.A., Ziemiecki,A., Ihle,J.N., Kerr,I.M. and Cantrell,D.A. (1994) Activation of JAK kinases and STAT proteins by interleukin-2 and interferon alpha, but not the T cell antigen receptor, in human T lymphocytes. EMBO J., 13, 5605-5615.
-
(1994)
EMBO J.
, vol.13
, pp. 5605-5615
-
-
Beadling, C.1
Guschin, D.2
Witthuhn, B.A.3
Ziemiecki, A.4
Ihle, J.N.5
Kerr, I.M.6
Cantrell, D.A.7
-
37
-
-
84886724189
-
Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation
-
Hu,G.Q., Tang,Q.S., Sharma,S., Yu,F., Escobar,T.M., Muljo,S.A., Zhu,J.F. and Zhao,K.J. (2013) Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation. Nat. Immunol., 14, 1190-1198.
-
(2013)
Nat. Immunol.
, vol.14
, pp. 1190-1198
-
-
Hu, G.Q.1
Tang, Q.S.2
Sharma, S.3
Yu, F.4
Escobar, T.M.5
Muljo, S.A.6
Zhu, J.F.7
Zhao, K.J.8
-
38
-
-
58149214356
-
Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4(+) T Cells
-
Wei,G., Wei,L., Zhu,J.F., Zang,C.Z., Hu-Li,J., Yao,Z.J., Cui,K.R., Kanno,Y., Roh,T.Y., Watford,W.T. et al. (2009) Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4(+) T Cells. Immunity, 30, 155-167.
-
(2009)
Immunity
, vol.30
, pp. 155-167
-
-
Wei, G.1
Wei, L.2
Zhu, J.F.3
Zang, C.Z.4
Hu-Li, J.5
Yao, Z.J.6
Cui, K.R.7
Kanno, Y.8
Roh, T.Y.9
Watford, W.T.10
-
39
-
-
84921745933
-
Transcriptional regulatory networks for CD4 T Cell differentiation
-
Christie,D. and Zhu,J.F. (2014) Transcriptional regulatory networks for CD4 T Cell differentiation. Curr. Top Microbiol. Immunol., 381, 125-172.
-
(2014)
Curr. Top Microbiol. Immunol.
, vol.381
, pp. 125-172
-
-
Christie, D.1
Zhu, J.F.2
-
40
-
-
77958611660
-
Peripheral CD4+T-cell differentiation regulated by networks of cytokines and transcription factors
-
Zhu,J.F. and Paul,W.E. (2010) Peripheral CD4+T-cell differentiation regulated by networks of cytokines and transcription factors. Immunol. Rev., 238, 247-262.
-
(2010)
Immunol. Rev.
, vol.238
, pp. 247-262
-
-
Zhu, J.F.1
Paul, W.E.2
-
41
-
-
84872202296
-
Impaired proteasome function activates GATA3 in T cells and upregulates CTLA-4: Relevance for Sezary syndrome
-
Gibson,H.M., Mishra,A., Chan,D.V., Hake,T.S., Porcu,P. and Wong,H.K. (2013) Impaired proteasome function activates GATA3 in T cells and upregulates CTLA-4: relevance for Sezary syndrome. J. Invest. Dermatol., 133, 249-257.
-
(2013)
J. Invest. Dermatol.
, vol.133
, pp. 249-257
-
-
Gibson, H.M.1
Mishra, A.2
Chan, D.V.3
Hake, T.S.4
Porcu, P.5
Wong, H.K.6
-
42
-
-
78651102330
-
A meiotic gene regulatory cascade driven by alternative fates for newly synthesized transcripts
-
Cremona,N., Potter,K. and Wise,J.A. (2011) A meiotic gene regulatory cascade driven by alternative fates for newly synthesized transcripts. Mol. Biol. Cell, 22, 66-77.
-
(2011)
Mol. Biol. Cell
, vol.22
, pp. 66-77
-
-
Cremona, N.1
Potter, K.2
Wise, J.A.3
-
43
-
-
80053932983
-
Stress-responsive maturation of Clk1/4 pre-mRNAs promotes phosphorylation of SR splicing factor
-
Ninomiya,K., Kataoka,N. and Hagiwara,M. (2011) Stress-responsive maturation of Clk1/4 pre-mRNAs promotes phosphorylation of SR splicing factor. J. Cell Biol., 195, 27-40.
-
(2011)
J. Cell Biol.
, vol.195
, pp. 27-40
-
-
Ninomiya, K.1
Kataoka, N.2
Hagiwara, M.3
-
44
-
-
84875263259
-
Removal of retained introns regulates translation in the rapidly developing gametophyte of Marsilea vestita
-
Boothby,T.C., Zipper,R.S., van der Weele,C.M. and Wolniak,S.M. (2013) Removal of retained introns regulates translation in the rapidly developing gametophyte of Marsilea vestita. Dev. Cell, 24, 517-529.
-
(2013)
Dev. Cell
, vol.24
, pp. 517-529
-
-
Boothby, T.C.1
Zipper, R.S.2
Van Der Weele, C.M.3
Wolniak, S.M.4
-
45
-
-
78049416081
-
Alternative pre-mRNA splicing regulation in cancer: Pathways and programs unhinged
-
David,C.J. and Manley,J.L. (2010) Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged. Genes Dev., 24, 2343-2364.
-
(2010)
Genes Dev.
, vol.24
, pp. 2343-2364
-
-
David, C.J.1
Manley, J.L.2
-
46
-
-
0036798006
-
Signals and their transduction pathways regulating alternative splicing: A new dimension of the human genome
-
Stamm,S. (2002) Signals and their transduction pathways regulating alternative splicing: a new dimension of the human genome. Hum. Mol. Genet., 11, 2409-2416.
-
(2002)
Hum. Mol. Genet.
, vol.11
, pp. 2409-2416
-
-
Stamm, S.1
-
47
-
-
84864929478
-
Computational inference of mRNA stability from histone modification and transcriptome profiles
-
Wang,C., Tian,R., Zhao,Q., Xu,H., Meyer,C.A., Li,C., Zhang,Y. and Liu,X.S. (2012) Computational inference of mRNA stability from histone modification and transcriptome profiles. Nucleic Acids Res., 40, 6414-6423.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 6414-6423
-
-
Wang, C.1
Tian, R.2
Zhao, Q.3
Xu, H.4
Meyer, C.A.5
Li, C.6
Zhang, Y.7
Liu, X.S.8
-
48
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core,L.J., Waterfall,J.J. and Lis,J.T. (2008) Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science, 322, 1845-1848.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
49
-
-
84873426026
-
Coordinated regulation of synthesis and stability of RNA during the acute TNF-induced proinflammatory response
-
Paulsen,M.T., Veloso,A., Prasad,J., Bedi,K., Ljungman,E.A., Tsan,Y.C., Chang,C.W., Tarrier,B., Washburn,J.G., Lyons,R. et al. (2013) Coordinated regulation of synthesis and stability of RNA during the acute TNF-induced proinflammatory response. Proc. Natl. Acad. Sci. U.S.A., 110, 2240-2245.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 2240-2245
-
-
Paulsen, M.T.1
Veloso, A.2
Prasad, J.3
Bedi, K.4
Ljungman, E.A.5
Tsan, Y.C.6
Chang, C.W.7
Tarrier, B.8
Washburn, J.G.9
Lyons, R.10
-
50
-
-
84865777822
-
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
-
Tilgner,H., Knowles,D.G., Johnson,R., Davis,C.A., Chakraborty,S., Djebali,S., Curado,J., Snyder,M., Gingeras,T.R. and Guigo,R. (2012) Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs. Genome Res., 22, 1616-1625.
-
(2012)
Genome Res.
, vol.22
, pp. 1616-1625
-
-
Tilgner, H.1
Knowles, D.G.2
Johnson, R.3
Davis, C.A.4
Chakraborty, S.5
Djebali, S.6
Curado, J.7
Snyder, M.8
Gingeras, T.R.9
Guigo, R.10
-
51
-
-
32544442422
-
Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells
-
Brodsky,A.S., Meyer,C.A., Swinburne,I.A., Giles,H., Keenan,B.J., Liu,X.L.S., Fox,E.A. and Silver,P.A. (2005) Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells. Genome Biol., 6, R64.
-
(2005)
Genome Biol.
, vol.6
, pp. R64
-
-
Brodsky, A.S.1
Meyer, C.A.2
Swinburne, I.A.3
Giles, H.4
Keenan, B.J.5
Liu, X.L.S.6
Fox, E.A.7
Silver, P.A.8
-
52
-
-
78649303325
-
Splicing-dependent RNA polymerase pausing in yeast
-
Alexander,R.D., Innocente,S.A., Barrass,J.D. and Beggs,J.D. (2010) Splicing-dependent RNA polymerase pausing in yeast. Mol. Cell, 40, 582-593.
-
(2010)
Mol. Cell
, vol.40
, pp. 582-593
-
-
Alexander, R.D.1
Innocente, S.A.2
Barrass, J.D.3
Beggs, J.D.4
-
53
-
-
77954659099
-
Relationship between nucleosome positioning and DNA methylation
-
Chodavarapu,R.K., Feng,S.H., Bernatavichute,Y.V., Chen,P.Y., Stroud,H., Yu,Y.C., Hetzel,J.A., Kuo,F., Kim,J., Cokus,S.J. et al. (2010) Relationship between nucleosome positioning and DNA methylation. Nature, 466, 388-392.
-
(2010)
Nature
, vol.466
, pp. 388-392
-
-
Chodavarapu, R.K.1
Feng, S.H.2
Bernatavichute, Y.V.3
Chen, P.Y.4
Stroud, H.5
Yu, Y.C.6
Hetzel, J.A.7
Kuo, F.8
Kim, J.9
Cokus, S.J.10
-
54
-
-
84874175008
-
Precise maps of RNA polymerase reveal how promoters direct initiation and pausing
-
Kwak,H., Fuda,N.J., Core,L.J. and Lis,J.T. (2013) Precise maps of RNA polymerase reveal how promoters direct initiation and pausing. Science, 339, 950-953.
-
(2013)
Science
, vol.339
, pp. 950-953
-
-
Kwak, H.1
Fuda, N.J.2
Core, L.J.3
Lis, J.T.4
-
55
-
-
84875444381
-
Alternative splicing: A pivotal step between eukaryotic transcription and translation
-
Kornblihtt,A.R., Schor,I.E., Allo,M., Dujardin,G., Petrillo,E. and Munoz,M.J. (2013) Alternative splicing: A pivotal step between eukaryotic transcription and translation. Nat. Rev. Mol. Cell Biol., 14, 153-165.
-
(2013)
Nat. Rev. Mol. Cell Biol.
, vol.14
, pp. 153-165
-
-
Kornblihtt, A.R.1
Schor, I.E.2
Allo, M.3
Dujardin, G.4
Petrillo, E.5
Munoz, M.J.6
-
56
-
-
84861848461
-
Co-transcriptional regulation of alternative pre-mRNA splicing
-
Shukla,S. and Oberdoerffer,S. (2012) Co-transcriptional regulation of alternative pre-mRNA splicing. Biochim. Biophys. Acta, 1819, 673-683.
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 673-683
-
-
Shukla, S.1
Oberdoerffer, S.2
-
57
-
-
0035883954
-
Transcription regulation by histone methylation: Interplay between different covalent modifications of the core histone tails
-
Zhang,Y. and Reinberg,D. (2001) Transcription regulation by histone methylation: interplay between different covalent modifications of the core histone tails. Genes Dev., 15, 2343-2360.
-
(2001)
Genes Dev.
, vol.15
, pp. 2343-2360
-
-
Zhang, Y.1
Reinberg, D.2
-
58
-
-
77149175671
-
Regulation of alternative splicing by histone modifications
-
Luco,R.F., Pan,Q., Tominaga,K., Blencowe,B.J., Pereira-Smith,O.M. and Misteli,T. (2010) Regulation of alternative splicing by histone modifications. Science, 327, 996-1000.
-
(2010)
Science
, vol.327
, pp. 996-1000
-
-
Luco, R.F.1
Pan, Q.2
Tominaga, K.3
Blencowe, B.J.4
Pereira-Smith, O.M.5
Misteli, T.6
-
59
-
-
84922272084
-
BS69/ZMYND11 reads and connects histone H3 3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing
-
Guo,R., Zheng,L., Park,J.W., Lv,R., Chen,H., Jiao,F., Xu,W., Mu,S., Wen,H., Qiu,J. et al. (2014) BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing. Mol. Cell, 56, 298-310.
-
(2014)
Mol. Cell
, vol.56
, pp. 298-310
-
-
Guo, R.1
Zheng, L.2
Park, J.W.3
Lv, R.4
Chen, H.5
Jiao, F.6
Xu, W.7
Mu, S.8
Wen, H.9
Qiu, J.10
-
60
-
-
84943538773
-
Widespread JNK-dependent alternative splicing induces a positive feedback loop through CELF2-mediated regulation of MKK7 during T-cell activation
-
Martinez,N.M., Agosto,L., Qiu,J., Mallory,M.J., Gazzara,M.R., Barash,Y., Fu,X.D. and Lynch,K.W. (2015) Widespread JNK-dependent alternative splicing induces a positive feedback loop through CELF2-mediated regulation of MKK7 during T-cell activation. Genes Dev., 29, 2054-2066.
-
(2015)
Genes Dev.
, vol.29
, pp. 2054-2066
-
-
Martinez, N.M.1
Agosto, L.2
Qiu, J.3
Mallory, M.J.4
Gazzara, M.R.5
Barash, Y.6
Fu, X.D.7
Lynch, K.W.8
-
61
-
-
84947430260
-
Global analysis of physical and functional RNA targets of hnRNP L reveals distinct sequence and epigenetic features of repressed and enhanced exons
-
Cole,B.S., Tapescu,I., Allon,S.J., Mallory,M.J., Qiu,J., Lake,R.J., Fan,H.Y., Fu,X.D. and Lynch,K.W. (2015) Global analysis of physical and functional RNA targets of hnRNP L reveals distinct sequence and epigenetic features of repressed and enhanced exons. RNA, 21, 2053-2066.
-
(2015)
RNA
, vol.21
, pp. 2053-2066
-
-
Cole, B.S.1
Tapescu, I.2
Allon, S.J.3
Mallory, M.J.4
Qiu, J.5
Lake, R.J.6
Fan, H.Y.7
Fu, X.D.8
Lynch, K.W.9
-
62
-
-
84924279535
-
HTLV-1-infected CD4+ T-cells display alternative exon usages that culminate in adult T-cell leukemia
-
Thenoz,M., Vernin,C., Mortada,H., Karam,M., Pinatel,C., Gessain,A., Webb,T.R., Auboeuf,D.,Wattel,E. and Mortreux,F. (2014) HTLV-1-infected CD4+ T-cells display alternative exon usages that culminate in adult T-cell leukemia. Retrovirology, 11, 119.
-
(2014)
Retrovirology
, vol.11
, pp. 119
-
-
Thenoz, M.1
Vernin, C.2
Mortada, H.3
Karam, M.4
Pinatel, C.5
Gessain, A.6
Webb, T.R.7
Auboeuf, D.8
Wattel, E.9
Mortreux, F.10
|