-
1
-
-
47949099098
-
Origin and physiological roles of inflammation
-
Medzhitov R (2008) Origin and physiological roles of inflammation. Nature 454(7203): 428-435.
-
(2008)
Nature
, vol.454
, Issue.7203
, pp. 428-435
-
-
Medzhitov, R.1
-
2
-
-
26444435364
-
A TNF-induced gene expression program under oscillatory NF-kappaB control
-
Tian B, Nowak DE, Brasier AR (2005) A TNF-induced gene expression program under oscillatory NF-kappaB control. BMC Genomics 6:137.
-
(2005)
BMC Genomics
, vol.6
, pp. 137
-
-
Tian, B.1
Nowak, D.E.2
Brasier, A.R.3
-
3
-
-
72949123583
-
Post-transcriptional regulons coordinate the initiation and resolution of inflammation
-
Anderson P (2010) Post-transcriptional regulons coordinate the initiation and resolution of inflammation. Nat Rev Immunol 10(1):24-35.
-
(2010)
Nat Rev Immunol
, vol.10
, Issue.1
, pp. 24-35
-
-
Anderson, P.1
-
4
-
-
77956727472
-
Post-transcriptional control during chronic inflammation and cancer: A focus on AU-rich elements
-
Khabar KS (2010) Post-transcriptional control during chronic inflammation and cancer: A focus on AU-rich elements. Cell Mol Life Sci 67(17):2937-2955.
-
(2010)
Cell Mol Life Sci
, vol.67
, Issue.17
, pp. 2937-2955
-
-
Khabar, K.S.1
-
5
-
-
60749124122
-
The stability of mRNA influences the temporal order of the induction of genes encoding inflammatory molecules
-
Hao S, Baltimore D (2009) The stability of mRNA influences the temporal order of the induction of genes encoding inflammatory molecules. Nat Immunol 10(3):281-288.
-
(2009)
Nat Immunol
, vol.10
, Issue.3
, pp. 281-288
-
-
Hao, S.1
Baltimore, D.2
-
6
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core LJ, Waterfall JJ, Lis JT (2008) Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322(5909):1845-1848.
-
(2008)
Science
, vol.322
, Issue.5909
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
7
-
-
78751659330
-
Nascent transcript sequencing visualizes transcription at nucleotide resolution
-
Churchman LS, Weissman JS (2011) Nascent transcript sequencing visualizes transcription at nucleotide resolution. Nature 469(7330):368-373.
-
(2011)
Nature
, vol.469
, Issue.7330
, pp. 368-373
-
-
Churchman, L.S.1
Weissman, J.S.2
-
8
-
-
82955247079
-
Nascent-seq indicates widespread cotranscriptional premRNA splicing in Drosophila
-
Khodor YL, et al. (2011) Nascent-seq indicates widespread cotranscriptional premRNA splicing in Drosophila. Genes Dev 25(23):2502-2512.
-
(2011)
Genes Dev
, vol.25
, Issue.23
, pp. 2502-2512
-
-
Khodor, Y.L.1
-
9
-
-
56149098627
-
Novel DNA microarray system for analysis of nascent mRNAs
-
Ohtsu M, et al. (2008) Novel DNA microarray system for analysis of nascent mRNAs. DNA Res 15(4):241-251.
-
(2008)
DNA Res
, vol.15
, Issue.4
, pp. 241-251
-
-
Ohtsu, M.1
-
10
-
-
79955768436
-
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells
-
Rabani M, et al. (2011) Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells. Nat Biotechnol 29(5):436-442.
-
(2011)
Nat Biotechnol
, vol.29
, Issue.5
, pp. 436-442
-
-
Rabani, M.1
-
11
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhäusser B, et al. (2011) Global quantification of mammalian gene expression control. Nature 473(7347):337-342.
-
(2011)
Nature
, vol.473
, Issue.7347
, pp. 337-342
-
-
Schwanhäusser, B.1
-
12
-
-
0035233239
-
Genomic-scale measurement of mRNA turnover and the mechanisms of action of the anti-cancer drug flavopiridol
-
RESEARCH0041
-
Lam LT, et al. (2001) Genomic-scale measurement of mRNA turnover and the mechanisms of action of the anti-cancer drug flavopiridol. Genome Biol 2(10):RESEARCH0041.
-
(2001)
Genome Biol
, vol.2
, Issue.10
-
-
Lam, L.T.1
-
13
-
-
0037115826
-
Genome-wide analysis of mRNA decay in resting and activated primary human T lymphocytes
-
Raghavan A, et al. (2002) Genome-wide analysis of mRNA decay in resting and activated primary human T lymphocytes. Nucleic Acids Res 30(24):5529-5538.
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.24
, pp. 5529-5538
-
-
Raghavan, A.1
-
14
-
-
84865739425
-
Architecture of the human regulatory network derived from ENCODE data
-
Gerstein MB, et al. (2012) Architecture of the human regulatory network derived from ENCODE data. Nature 489(7414):91-100.
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 91-100
-
-
Gerstein, M.B.1
-
15
-
-
84860575639
-
Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals
-
Tani H, et al. (2012) Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals. Genome Res 22(5):947-956.
-
(2012)
Genome Res
, vol.22
, Issue.5
, pp. 947-956
-
-
Tani, H.1
-
16
-
-
79961060611
-
Dynamic profiling of mRNA turnover reveals gene-specific and system-wide regulation of mRNA decay
-
Munchel SE, Shultzaberger RK, Takizawa N, Weis K (2011) Dynamic profiling of mRNA turnover reveals gene-specific and system-wide regulation of mRNA decay. Mol Biol Cell 22(15):2787-2795.
-
(2011)
Mol Biol Cell
, vol.22
, Issue.15
, pp. 2787-2795
-
-
Munchel, S.E.1
Shultzaberger, R.K.2
Takizawa, N.3
Weis, K.4
-
17
-
-
0031214559
-
Immunoseparation and immunodetection of nucleic acids labeled with halogenated nucleotides
-
Haider SR, Juan G, Traganos F, Darzynkiewicz Z (1997) Immunoseparation and immunodetection of nucleic acids labeled with halogenated nucleotides. Exp Cell Res 234(2):498-506.
-
(1997)
Exp Cell Res
, vol.234
, Issue.2
, pp. 498-506
-
-
Haider, S.R.1
Juan, G.2
Traganos, F.3
Darzynkiewicz, Z.4
-
18
-
-
57849123049
-
RNA exosome depletion reveals transcription upstream of active human promoters
-
Preker P, et al. (2008) RNA exosome depletion reveals transcription upstream of active human promoters. Science 322(5909):1851-1854.
-
(2008)
Science
, vol.322
, Issue.5909
, pp. 1851-1854
-
-
Preker, P.1
-
19
-
-
77956927823
-
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
-
Tripathi V, et al. (2010) The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell 39(6): 925-938.
-
(2010)
Mol Cell
, vol.39
, Issue.6
, pp. 925-938
-
-
Tripathi, V.1
-
20
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali S, et al. (2012) Landscape of transcription in human cells. Nature 489(7414): 101-108.
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 101-108
-
-
Djebali, S.1
-
21
-
-
84860581983
-
Genome-wide analysis of long noncoding RNA stability
-
Clark MB, et al. (2012) Genome-wide analysis of long noncoding RNA stability. Genome Res 22(5):885-898.
-
(2012)
Genome Res
, vol.22
, Issue.5
, pp. 885-898
-
-
Clark, M.B.1
-
22
-
-
2942561052
-
Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors
-
Grigull J, Mnaimneh S, Pootoolal J, Robinson MD, Hughes TR (2004) Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors. Mol Cell Biol 24(12): 5534-5547.
-
(2004)
Mol Cell Biol
, vol.24
, Issue.12
, pp. 5534-5547
-
-
Grigull, J.1
Mnaimneh, S.2
Pootoolal, J.3
Robinson, M.D.4
Hughes, T.R.5
-
23
-
-
33847792061
-
Mitochondrial transcription and its regulation in mammalian cells
-
Asin-Cayuela J, Gustafsson CM (2007) Mitochondrial transcription and its regulation in mammalian cells. Trends Biochem Sci 32(3):111-117.
-
(2007)
Trends Biochem Sci
, vol.32
, Issue.3
, pp. 111-117
-
-
Asin-Cayuela, J.1
Gustafsson, C.M.2
-
24
-
-
80052007901
-
The human mitochondrial transcriptome
-
Mercer TR, et al. (2011) The human mitochondrial transcriptome. Cell 146(4):645-658.
-
(2011)
Cell
, vol.146
, Issue.4
, pp. 645-658
-
-
Mercer, T.R.1
-
25
-
-
79960202884
-
Integrative genomic analysis of human ribosomal DNA
-
Zentner GE, Saiakhova A, Manaenkov P, Adams MD, Scacheri PC (2011) Integrative genomic analysis of human ribosomal DNA. Nucleic Acids Res 39(12):4949-4960.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.12
, pp. 4949-4960
-
-
Zentner, G.E.1
Saiakhova, A.2
Manaenkov, P.3
Adams, M.D.4
Scacheri, P.C.5
-
26
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11(10):R106.
-
(2010)
Genome Biol
, vol.11
, Issue.10
-
-
Anders, S.1
Huber, W.2
-
27
-
-
33846845071
-
MicroRNA-155 is induced during the macrophage inflammatory response
-
O'Connell RM, Taganov KD, Boldin MP, Cheng G, Baltimore D (2007) MicroRNA-155 is induced during the macrophage inflammatory response. Proc Natl Acad Sci USA 104(5): 1604-1609.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.5
, pp. 1604-1609
-
-
O'Connell, R.M.1
Taganov, K.D.2
Boldin, M.P.3
Cheng, G.4
Baltimore, D.5
-
28
-
-
33747608638
-
NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses
-
Taganov KD, Boldin MP, Chang KJ, Baltimore D (2006) NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses. Proc Natl Acad Sci USA 103(33):12481-12486.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.33
, pp. 12481-12486
-
-
Taganov, K.D.1
Boldin, M.P.2
Chang, K.J.3
Baltimore, D.4
-
29
-
-
84862812020
-
A novel miR-155/miR-143 cascade controls glycolysis by regulating hexokinase 2 in breast cancer cells
-
Jiang S, et al. (2012) A novel miR-155/miR-143 cascade controls glycolysis by regulating hexokinase 2 in breast cancer cells. EMBO J 31(8):1985-1998.
-
(2012)
EMBO J
, vol.31
, Issue.8
, pp. 1985-1998
-
-
Jiang, S.1
-
30
-
-
85047692516
-
Signalling pathways of the TNF superfamily: A double-edged sword
-
Aggarwal BB (2003) Signalling pathways of the TNF superfamily: A double-edged sword. Nat Rev Immunol 3(9):745-756.
-
(2003)
Nat Rev Immunol
, vol.3
, Issue.9
, pp. 745-756
-
-
Aggarwal, B.B.1
-
31
-
-
0029976817
-
An essential role for NF-kappaB in preventing TNF-alphainduced cell death
-
Beg AA, Baltimore D (1996) An essential role for NF-kappaB in preventing TNF-alphainduced cell death. Science 274(5288):782-784.
-
(1996)
Science
, vol.274
, Issue.5288
, pp. 782-784
-
-
Beg, A.A.1
Baltimore, D.2
-
32
-
-
0033590624
-
Inhibition of RNA polymerase II as a trigger for the p53 response
-
Ljungman M, Zhang FF, Chen F, Rainbow AJ, McKay BC (1999) Inhibition of RNA polymerase II as a trigger for the p53 response. Oncogene 18(3):583-592.
-
(1999)
Oncogene
, vol.18
, Issue.3
, pp. 583-592
-
-
Ljungman, M.1
Zhang, F.F.2
Chen, F.3
Rainbow, A.J.4
McKay, B.C.5
-
33
-
-
50649118115
-
High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay
-
Dölken L, et al. (2008) High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA 14(9):1959-1972.
-
(2008)
RNA
, vol.14
, Issue.9
, pp. 1959-1972
-
-
Dölken, L.1
-
34
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5(7):621-628.
-
(2008)
Nat Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
|