-
1
-
-
77952236323
-
RNAi-dependent formation of heterochromatin and its diverse functions
-
Grewal, S. I. (2010) RNAi-dependent formation of heterochromatin and its diverse functions. Curr. Opin. Genet. Dev. 20, 134-141.
-
(2010)
Curr. Opin. Genet. Dev.
, vol.20
, pp. 134-141
-
-
Grewal, S.I.1
-
2
-
-
0037072661
-
Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
-
Volpe, T. A., Kidner, C., Hall, I. M., Teng, G., Grewal, S. I., and Martienssen, R. A. (2002) Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297, 1833-1837.
-
(2002)
Science
, vol.297
, pp. 1833-1837
-
-
Volpe, T.A.1
Kidner, C.2
Hall, I.M.3
Teng, G.4
Grewal, S.I.5
Martienssen, R.A.6
-
3
-
-
0037183856
-
Establishment and maintenance of a heterochromatin domain
-
Hall, I. M., Shankaranarayana, G. D., Noma, K., Ayoub, N., Cohen, A., and Grewal, S. I. (2002) Establishment and maintenance of a heterochromatin domain. Science 297, 2232-2237.
-
(2002)
Science
, vol.297
, pp. 2232-2237
-
-
Hall, I.M.1
Shankaranarayana, G.D.2
Noma, K.3
Ayoub, N.4
Cohen, A.5
Grewal, S.I.6
-
4
-
-
4143149753
-
Dicer is essential for formation of the heterochromatin structure in vertebrate cells
-
Fukagawa, T., Nogami, M., Yoshikawa, M., Ikeno, M., Okazaki, T., Takami, Y., Nakayama, T., and Oshimura, M. (2004) Dicer is essential for formation of the heterochromatin structure in vertebrate cells. Nat. Cell Biol. 6, 784-791.
-
(2004)
Nat. Cell Biol.
, vol.6
, pp. 784-791
-
-
Fukagawa, T.1
Nogami, M.2
Yoshikawa, M.3
Ikeno, M.4
Okazaki, T.5
Takami, Y.6
Nakayama, T.7
Oshimura, M.8
-
5
-
-
4344705410
-
Small interfering RNA-induced transcriptional gene silencing in human cells
-
Morris, K. V., Chan, S. W., Jacobsen, S. E., and Looney, D. J. (2004) Small interfering RNA-induced transcriptional gene silencing in human cells. Science 305, 1289-1292.
-
(2004)
Science
, vol.305
, pp. 1289-1292
-
-
Morris, K.V.1
Chan, S.W.2
Jacobsen, S.E.3
Looney, D.J.4
-
6
-
-
33748368912
-
Argonaute- 1 directs siRNA-mediated transcriptional gene silencing in human cells
-
Kim, D. H., Villeneuve, L. M., Morris, K. V., and Rossi, J. J. (2006) Argonaute- 1 directs siRNA-mediated transcriptional gene silencing in human cells. Nat. Struct. Mol. Biol. 13, 793-797.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 793-797
-
-
Kim, D.H.1
Villeneuve, L.M.2
Morris, K.V.3
Rossi, J.J.4
-
7
-
-
84884692746
-
Ago1 interacts withRNApolymerase II and binds to the promoters of actively transcribed genes in human cancer cells
-
Huang, V., Zheng, J., Qi, Z., Wang, J., Place, R. F., Yu, J., Li, H., and Li, L. C. (2013) Ago1 interacts withRNApolymerase II and binds to the promoters of actively transcribed genes in human cancer cells. PLoS Genet. 9, e1003821.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003821
-
-
Huang, V.1
Zheng, J.2
Qi, Z.3
Wang, J.4
Place, R.F.5
Yu, J.6
Li, H.7
Li, L.C.8
-
8
-
-
80053591906
-
Maintenance of a constitutive heterochromatin domain in vertebrates by a Dicer-dependent mechanism
-
Giles, K. E., Ghirlando, R., and Felsenfeld, G. (2010) Maintenance of a constitutive heterochromatin domain in vertebrates by a Dicer-dependent mechanism. Nat. Cell Biol. 12, 94-99.
-
(2010)
Nat. Cell Biol.
, vol.12
, pp. 94-99
-
-
Giles, K.E.1
Ghirlando, R.2
Felsenfeld, G.3
-
9
-
-
67650299463
-
Control of alternative splicing through siRNA-mediated transcriptional gene silencing
-
All', M., Buggiano, V., Fededa, J. P., Petrillo, E., Schor, I., de la Mata, M., Agirre, E., Plass, M., Eyras, E., Elela, S. A., Klinck, R., Chabot, B., and Kornblihtt, A. R. (2009) Control of alternative splicing through siRNA-mediated transcriptional gene silencing. Nat. Struct. Mol. Biol. 16, 717-724.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 717-724
-
-
All, M.1
Buggiano, V.2
Fededa, J.P.3
Petrillo, E.4
Schor, I.5
De La Mata, M.6
Agirre, E.7
Plass, M.8
Eyras, E.9
Elela, S.A.10
Klinck, R.11
Chabot, B.12
Kornblihtt, A.R.13
-
10
-
-
84867230570
-
Argonaute proteins couple chromatin silencing to alternative splicing
-
Ameyar-Zazoua, M., Rachez, C., Souidi, M., Robin, P., Fritsch, L., Young, R., Morozova, N., Fenouil, R., Descostes, N., Andrau, J. C., Mathieu, J., Hamiche, A., Ait-Si-Ali, S., Muchardt, C., Batsch', E., and Harel-Bellan, A. (2012) Argonaute proteins couple chromatin silencing to alternative splicing. Nat. Struct. Mol. Biol. 19, 998-1004.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 998-1004
-
-
Ameyar-Zazoua, M.1
Rachez, C.2
Souidi, M.3
Robin, P.4
Fritsch, L.5
Young, R.6
Morozova, N.7
Fenouil, R.8
Descostes, N.9
Andrau, J.C.10
Mathieu, J.11
Hamiche, A.12
Ait-Si-Ali, S.13
Muchardt, C.14
Batsch, E.15
Harel-Bellan, A.16
-
11
-
-
84930827484
-
Argonaute 2 binds directly to tRNA genes and promotes gene repression in cis
-
Woolnough, J. L., Atwood, B. L., and Giles, K. E. (2015) Argonaute 2 binds directly to tRNA genes and promotes gene repression in cis. Mol. Cell. Biol. 35, 2278-2294.
-
(2015)
Mol. Cell. Biol.
, vol.35
, pp. 2278-2294
-
-
Woolnough, J.L.1
Atwood, B.L.2
Giles, K.E.3
-
12
-
-
84892544892
-
RNAi factors are present and active in human cell nuclei
-
Gagnon, K. T., Li, L., Chu, Y., Janowski, B. A., and Corey, D. R. (2014) RNAi factors are present and active in human cell nuclei. Cell Rep. 6, 211-221.
-
(2014)
Cell Rep.
, vol.6
, pp. 211-221
-
-
Gagnon, K.T.1
Li, L.2
Chu, Y.3
Janowski, B.A.4
Corey, D.R.5
-
13
-
-
84896859718
-
Argonaute-bound small RNAs from promoter-proximal RNA polymerase II
-
Zamudio, J. R., Kelly, T. J., and Sharp, P. A. (2014) Argonaute-bound small RNAs from promoter-proximal RNA polymerase II. Cell 156, 920-934.
-
(2014)
Cell
, vol.156
, pp. 920-934
-
-
Zamudio, J.R.1
Kelly, T.J.2
Sharp, P.A.3
-
14
-
-
59049090827
-
X chromosome inactivation in the absence of Dicer
-
Kanellopoulou, C., Muljo, S. A., Dimitrov, S. D., Chen, X., Colin, C., Plath, K., and Livingston, D. M. (2009) X chromosome inactivation in the absence of Dicer: Proc. Natl. Acad. Sci. U.S.A. 106, 1122-1127.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 1122-1127
-
-
Kanellopoulou, C.1
Muljo, S.A.2
Dimitrov, S.D.3
Chen, X.4
Colin, C.5
Plath, K.6
Livingston, D.M.7
-
15
-
-
55849109584
-
The epigenetics of rRNA genes: From molecular to chromosome biology
-
McStay, B., and Grummt, I. (2008) The epigenetics of rRNA genes: from molecular to chromosome biology. Annu. Rev. Cell Dev. Biol. 24, 131-157.
-
(2008)
Annu. Rev. Cell Dev. Biol.
, vol.24
, pp. 131-157
-
-
McStay, B.1
Grummt, I.2
-
16
-
-
70350112537
-
Allelic inactivation of rDNA loci
-
Schlesinger, S., Selig, S., Bergman, Y., and Cedar, H. (2009) Allelic inactivation of rDNA loci. Genes Dev. 23, 2437-2447.
-
(2009)
Genes Dev.
, vol.23
, pp. 2437-2447
-
-
Schlesinger, S.1
Selig, S.2
Bergman, Y.3
Cedar, H.4
-
17
-
-
77957859055
-
Dicer is associated with ribosomal DNA chromatin in mammalian cells
-
Sinkkonen, L., Hugenschmidt, T., Filipowicz, W., and Svoboda, P. (2010) Dicer is associated with ribosomal DNA chromatin in mammalian cells. PloS One 5, e12175.
-
(2010)
PloS One
, vol.5
, pp. e12175
-
-
Sinkkonen, L.1
Hugenschmidt, T.2
Filipowicz, W.3
Svoboda, P.4
-
18
-
-
84914674878
-
Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells
-
All', M., Agirre, E., Bessonov, S., Bertucci, P., G'mez Acu'a, L., Buggiano, V., Bellora, N., Singh, B., Petrillo, E., Blaustein, M., Mi'ana, B., Dujardin, G., Pozzi, B., Pelisch, F., et al. (2014) Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells. Proc. Natl. Acad. Sci. U.S.A. 111, 15622-15629.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 15622-15629
-
-
All, M.1
Agirre, E.2
Bessonov, S.3
Bertucci, P.4
G'mez Acua, L.5
Buggiano, V.6
Bellora, N.7
Singh, B.8
Petrillo, E.9
Blaustein, M.10
Miana, B.11
Dujardin, G.12
Pozzi, B.13
Pelisch, F.14
-
19
-
-
79960202884
-
Integrative genomic analysis of human ribosomal DNA
-
Zentner, G. E., Saiakhova, A., Manaenkov, P., Adams, M. D., and Scacheri, P. C. (2011) Integrative genomic analysis of human ribosomal DNA. Nucleic Acids Res. 39, 4949-4960.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 4949-4960
-
-
Zentner, G.E.1
Saiakhova, A.2
Manaenkov, P.3
Adams, M.D.4
Scacheri, P.C.5
-
20
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang, Y., Liu, T., Meyer, C. A., Eeckhoute, J., Johnson, D. S., Bernstein, B. E., Nusbaum, C., Myers, R. M., Brown, M., Li, W., and Liu, X. S. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137.
-
(2008)
Genome Biol.
, vol.9
, pp. R137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
21
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner, M., Landthaler, M., Burger, L., Khorshid, M., Hausser, J., Berninger, P., Rothballer, A., Ascano, M., Jr., Jungkamp, A. C., Munschauer, M., Ulrich, A., Wardle, G. S., Dewell, S., Zavolan, M., and Tuschl, T. (2010) Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141, 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
Rothballer, A.7
Ascano, Jr.M.8
Jungkamp, A.C.9
Munschauer, M.10
Ulrich, A.11
Wardle, G.S.12
Dewell, S.13
Zavolan, M.14
Tuschl, T.15
-
22
-
-
80051786284
-
PARalyzer: Definition of RNA binding sites from PAR-CLIP short-read sequence data
-
Corcoran, D. L., Georgiev, S., Mukherjee, N., Gottwein, E., Skalsky, R. L., Keene, J. D., and Ohler, U. (2011) PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data. Genome Biol. 12, R79.
-
(2011)
Genome Biol.
, vol.12
, pp. R79
-
-
Corcoran, D.L.1
Georgiev, S.2
Mukherjee, N.3
Gottwein, E.4
Skalsky, R.L.5
Keene, J.D.6
Ohler, U.7
-
23
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M., and Salzberg, S. L. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25.
-
(2009)
Genome Biol.
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
24
-
-
84902301560
-
Online GESS: Prediction of miRNA-like off-target effects in large-scale RNAi screen data by seed region analysis
-
Yilmazel, B., Hu, Y., Sigoillot, F., Smith, J. A., Shamu, C. E., Perrimon, N., and Mohr, S. E. (2014) Online GESS: prediction of miRNA-like off-target effects in large-scale RNAi screen data by seed region analysis.BMCBioinformatics 15, 192.
-
(2014)
BMCBioinformatics
, vol.15
, pp. 192
-
-
Yilmazel, B.1
Hu, Y.2
Sigoillot, F.3
Smith, J.A.4
Shamu, C.E.5
Perrimon, N.6
Mohr, S.E.7
-
25
-
-
77949473897
-
Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis
-
Sudbery, I., Enright, A. J., Fraser, A. G., and Dunham, I. (2010) Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis. BMC Genomics 11, 175.
-
(2010)
BMC Genomics
, vol.11
, pp. 175
-
-
Sudbery, I.1
Enright, A.J.2
Fraser, A.G.3
Dunham, I.4
-
26
-
-
70449122099
-
Distinct mechanisms for microRNA strand selection by Drosophila Argonautes
-
Okamura, K., Liu, N., and Lai, E. C. (2009) Distinct mechanisms for microRNA strand selection by Drosophila Argonautes. Mol. Cell 36, 431-444.
-
(2009)
Mol. Cell
, vol.36
, pp. 431-444
-
-
Okamura, K.1
Liu, N.2
Lai, E.C.3
-
27
-
-
77951194366
-
Reduced seed region-based off-target activity with lentivirus-mediated RNAi
-
Klinghoffer, R. A., Magnus, J., Schelter, J., Mehaffey, M., Coleman, C., and Cleary, M. A. (2010) Reduced seed region-based off-target activity with lentivirus-mediated RNAi. RNA 16, 879-884.
-
(2010)
RNA
, vol.16
, pp. 879-884
-
-
Klinghoffer, R.A.1
Magnus, J.2
Schelter, J.3
Mehaffey, M.4
Coleman, C.5
Cleary, M.A.6
-
28
-
-
84859440105
-
Thermodynamic basis of selectivity in guide-target-mismatched RNA interference
-
Joseph, T. T., and Osman, R. (2012) Thermodynamic basis of selectivity in guide-target-mismatched RNA interference. Proteins 80, 1283-1298.
-
(2012)
Proteins
, vol.80
, pp. 1283-1298
-
-
Joseph, T.T.1
Osman, R.2
-
29
-
-
84901402848
-
Derivation and characterization of Dicer- and microRNAdeficient human cells
-
Bogerd, H. P., Whisnant, A. W., Kennedy, E. M., Flores, O., and Cullen, B. R. (2014) Derivation and characterization of Dicer- and microRNAdeficient human cells. RNA 20, 923-937.
-
(2014)
RNA
, vol.20
, pp. 923-937
-
-
Bogerd, H.P.1
Whisnant, A.W.2
Kennedy, E.M.3
Flores, O.4
Cullen, B.R.5
-
30
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
31
-
-
84864913576
-
Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs
-
Li, Z., Ender, C., Meister, G., Moore, P. S., Chang, Y., and John, B. (2012) Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs. Nucleic Acids Res. 40, 6787-6799.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 6787-6799
-
-
Li, Z.1
Ender, C.2
Meister, G.3
Moore, P.S.4
Chang, Y.5
John, B.6
-
32
-
-
84958781049
-
RNAsynthesis and turnover in the molluscan nervous system studied by Click-iT method
-
Ierusalimsky, V. N., and Balaban, P. M. (2016)RNAsynthesis and turnover in the molluscan nervous system studied by Click-iT method. Brain Res. 1633, 139-148.
-
(2016)
Brain Res.
, vol.1633
, pp. 139-148
-
-
Ierusalimsky, V.N.1
Balaban, P.M.2
-
33
-
-
84886044727
-
4-thiouridine inhibits rRNA synthesis and causes a nucleolar stress response
-
Burger, K., M'hl, B., Kellner, M., Rohrmoser, M., Gruber-Eber, A., Windhager, L., Friedel, C. C., D'lken, L., and Eick, D. (2013) 4-thiouridine inhibits rRNA synthesis and causes a nucleolar stress response. RNA Biol. 10, 1623-1630.
-
(2013)
RNA Biol.
, vol.10
, pp. 1623-1630
-
-
Burger, K.1
M'hl, B.2
Kellner, M.3
Rohrmoser, M.4
Gruber-Eber, A.5
Windhager, L.6
Friedel, C.C.7
D'Lken, L.8
Eick, D.9
-
34
-
-
0018849252
-
The effect of actinomycin D on the nucleolus and on pigment synthesis in pigment cells of Xenopus laevis: An ultrastructural study
-
Kramer, B. (1980) The effect of actinomycin D on the nucleolus and on pigment synthesis in pigment cells of Xenopus laevis: an ultrastructural study. J. Anat. 130, 809-820.
-
(1980)
J. Anat.
, vol.130
, pp. 809-820
-
-
Kramer, B.1
-
35
-
-
0027524448
-
TheRNAPolymerase I-specific transcription initiation factor UBF is associated with transcriptionally active and inactive ribosomal genes
-
Zatsepina, O. V., Voit, R., Grummt, I., Spring, H., Semenov, M. V., and Trendelenburg, M. F. (1993) TheRNAPolymerase I-specific transcription initiation factor UBF is associated with transcriptionally active and inactive ribosomal genes. Chromosoma 102, 599-611.
-
(1993)
Chromosoma
, vol.102
, pp. 599-611
-
-
Zatsepina, O.V.1
Voit, R.2
Grummt, I.3
Spring, H.4
Semenov, M.V.5
Trendelenburg, M.F.6
-
36
-
-
0015186374
-
The stability of rat liver ribonucleic acid in vivo after methylation with methyl methanesulphonate or dimethylnitrosamine
-
McElhone, M. J., O'Connor, P. J., and Craig, A. W. (1971) The stability of rat liver ribonucleic acid in vivo after methylation with methyl methanesulphonate or dimethylnitrosamine. Biochem. J. 125, 821-827.
-
(1971)
Biochem. J.
, vol.125
, pp. 821-827
-
-
McElhone, M.J.1
O'Connor, P.J.2
Craig, A.W.3
-
37
-
-
75649133887
-
Expanded RNA-binding activities of mammalian Argonaute.2
-
Tan, G. S., Garchow, B. G., Liu, X., Yeung, J., Morris, J. P., 4th, Cuellar, T. L., McManus, M. T., and Kiriakidou, M. (2009) Expanded RNA-binding activities of mammalian Argonaute.2. Nucleic Acids Res. 37, 7533-7545.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 7533-7545
-
-
Tan, G.S.1
Garchow, B.G.2
Liu, X.3
Yeung, J.4
Morris, J.P.5
Cuellar, T.L.6
McManus, M.T.7
Kiriakidou, M.8
-
38
-
-
79959455595
-
Depletion of key protein components of the RISC pathway impairs pre-ribosomal RNA processing
-
Liang, X. H., and Crooke, S. T. (2011) Depletion of key protein components of the RISC pathway impairs pre-ribosomal RNA processing. Nucleic Acids Res. 39, 4875-4889.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 4875-4889
-
-
Liang, X.H.1
Crooke, S.T.2
-
39
-
-
84907332153
-
The MicroRNA biology of the mammalian nucleus
-
Roberts, T. C. (2014) The MicroRNA biology of the mammalian nucleus. Mol. Ther. Nucleic Acids 3, e188.
-
(2014)
Mol. Ther. Nucleic Acids
, vol.3
, pp. e188
-
-
Roberts, T.C.1
-
40
-
-
35548971658
-
MicroRNA-206 colocalizes with ribosome-rich regions in both the nucleolus and cytoplasm of rat myogenic cells
-
Politz, J. C., Zhang, F., and Pederson, T. (2006) MicroRNA-206 colocalizes with ribosome-rich regions in both the nucleolus and cytoplasm of rat myogenic cells. Proc. Natl. Acad. Sci. U.S.A. 103, 18957-18962.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 18957-18962
-
-
Politz, J.C.1
Zhang, F.2
Pederson, T.3
-
41
-
-
69049118109
-
MicroRNAs with a nucleolar location
-
Politz, J. C., Hogan, E. M., and Pederson, T. (2009) MicroRNAs with a nucleolar location. RNA 15, 1705-1715.
-
(2009)
RNA
, vol.15
, pp. 1705-1715
-
-
Politz, J.C.1
Hogan, E.M.2
Pederson, T.3
-
42
-
-
83755171315
-
Nucleolin protein interacts with microprocessor complex to affect biogenesis of microRNAs 15a and 16
-
Pickering, B. F., Yu, D., and Van Dyke, M. W. (2011) Nucleolin protein interacts with microprocessor complex to affect biogenesis of microRNAs 15a and 16. J. Biol. Chem. 286, 44095-44103.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 44095-44103
-
-
Pickering, B.F.1
Yu, D.2
Van Dyke, M.W.3
-
43
-
-
84881133452
-
Dynamic localisation of mature microRNAs in Human nucleoli is influenced by exogenous genetic materials
-
Li, Z. F., Liang, Y. M., Lau, P. N., Shen, W., Wang, D. K., Cheung, W. T., Xue, C. J., Poon, L. M., and Lam, Y. W. (2013) Dynamic localisation of mature microRNAs in Human nucleoli is influenced by exogenous genetic materials. PloS One 8, e70869.
-
(2013)
PloS One
, vol.8
, pp. e70869
-
-
Li, Z.F.1
Liang, Y.M.2
Lau, P.N.3
Shen, W.4
Wang, D.K.5
Cheung, W.T.6
Xue, C.J.7
Poon, L.M.8
Lam, Y.W.9
-
44
-
-
84929939713
-
RNASeq of the nucleolus reveals abundant SNORD44-derived small RNAs
-
Bai, B., Yegnasubramanian, S., Wheelan, S. J., and Laiho, M. (2014) RNASeq of the nucleolus reveals abundant SNORD44-derived small RNAs. PloS One 9, e107519.
-
(2014)
PloS One
, vol.9
, pp. e107519
-
-
Bai, B.1
Yegnasubramanian, S.2
Wheelan, S.J.3
Laiho, M.4
-
45
-
-
84901243830
-
Small RNA expression and deep sequencing analyses of the nucleolus reveal the presence of nucleolusassociated microRNAs
-
Bai, B., Liu, H., and Laiho, M. (2014) Small RNA expression and deep sequencing analyses of the nucleolus reveal the presence of nucleolusassociated microRNAs. FEBS Open Bio. 4, 441-449.
-
(2014)
FEBS Open Bio.
, vol.4
, pp. 441-449
-
-
Bai, B.1
Liu, H.2
Laiho, M.3
-
46
-
-
84886952042
-
The nucleolus: An emerging target for cancer therapy
-
Hein, N., Hannan, K. M., George, A. J., Sanij, E., and Hannan, R. D. (2013) The nucleolus: an emerging target for cancer therapy. Trends Mol. Med. 19, 643-654.
-
(2013)
Trends Mol. Med.
, vol.19
, pp. 643-654
-
-
Hein, N.1
Hannan, K.M.2
George, A.J.3
Sanij, E.4
Hannan, R.D.5
-
47
-
-
84863822813
-
Discovery of CX-5461, the first direct and selective inhibitor of RNA polymerase I, for cancer therapeutics
-
Haddach, M., Schwaebe, M. K., Michaux, J., Nagasawa, J., O'Brien, S. E., Whitten, J. P., Pierre, F., Kerdoncuff, P., Darjania, L., Stansfield, R., Drygin, D., Anderes, K., Proffitt, C., Bliesath, J., Siddiqui-Jain, A., Omori, M., Huser, N., Rice, W. G., and Ryckman, D. M. (2012) Discovery of CX-5461, the first direct and selective inhibitor of RNA polymerase I, for cancer therapeutics. ACS Med. Chem. Lett. 3, 602-606
-
(2012)
ACS Med. Chem. Lett.
, vol.3
, pp. 602-606
-
-
Haddach, M.1
Schwaebe, M.K.2
Michaux, J.3
Nagasawa, J.4
O'Brien, S.E.5
Whitten, J.P.6
Pierre, F.7
Kerdoncuff, P.8
Darjania, L.9
Stansfield, R.10
Drygin, D.11
Anderes, K.12
Proffitt, C.13
Bliesath, J.14
Siddiqui-Jain, A.15
Omori, M.16
Huser, N.17
Rice, W.G.18
Ryckman, D.M.19
-
48
-
-
84938522622
-
CX-5461 inhibits RNA Pol i in blood cancers
-
(2014) CX-5461 inhibits RNA Pol I in blood cancers. Cancer Discov. 4, OF5.
-
(2014)
Cancer Discov.
, vol.4
, pp. OF5
-
-
-
49
-
-
3242736704
-
Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs
-
Meister, G., Landthaler, M., Patkaniowska, A., Dorsett, Y., Teng, G., and Tuschl, T. (2004) Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. Mol. Cell 15, 185-197.
-
(2004)
Mol. Cell
, vol.15
, pp. 185-197
-
-
Meister, G.1
Landthaler, M.2
Patkaniowska, A.3
Dorsett, Y.4
Teng, G.5
Tuschl, T.6
-
50
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B., and Salzberg, S. L. (2012) Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357-359.
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
51
-
-
68549104404
-
The sequence alignment/Map format and SAMtools
-
1000 Genome Project Data Processing Subgroup
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., and 1000 Genome Project Data Processing Subgroup (2009) The sequence alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
52
-
-
84888264156
-
Practical guidelines for the comprehensive analysis of ChIP-seq data
-
Bailey, T., Krajewski, P., Ladunga, I., Lefebvre, C., Li, Q., Liu, T., Madrigal, P., Taslim, C., and Zhang, J. (2013) Practical guidelines for the comprehensive analysis of ChIP-seq data. PLoS Comput. Biol. 9, e1003326.
-
(2013)
PLoS Comput. Biol.
, vol.9
, pp. e1003326
-
-
Bailey, T.1
Krajewski, P.2
Ladunga, I.3
Lefebvre, C.4
Li, Q.5
Liu, T.6
Madrigal, P.7
Taslim, C.8
Zhang, J.9
-
53
-
-
84865777819
-
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
-
Landt, S. G., Marinov, G. K., Kundaje, A., Kheradpour, P., Pauli, F., Batzoglou, S., Bernstein, B. E., Bickel, P., Brown, J. B., Cayting, P., Chen, Y., DeSalvo, G., Epstein, C., Fisher-Aylor, K. I., Euskirchen, G., et al. (2012) ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res. 22, 1813-1831.
-
(2012)
Genome Res.
, vol.22
, pp. 1813-1831
-
-
Landt, S.G.1
Marinov, G.K.2
Kundaje, A.3
Kheradpour, P.4
Pauli, F.5
Batzoglou, S.6
Bernstein, B.E.7
Bickel, P.8
Brown, J.B.9
Cayting, P.10
Chen, Y.11
DeSalvo, G.12
Epstein, C.13
Fisher-Aylor, K.I.14
Euskirchen, G.15
-
54
-
-
84865790047
-
An integrated encyclopedia ofDNA elements in the human genome
-
ENCODE Project Consortium (2012) An integrated encyclopedia ofDNA elements in the human genome. Nature 489, 57-74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Project Consortium, E.1
-
55
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A. R., and Hall, I. M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
56
-
-
84899820221
-
The histone H2A deubiquitinase Usp16 regulates embryonic stem cell gene expression and lineage commitment
-
Yang, W., Lee, Y. H., Jones, A. E., Woolnough, J. L., Zhou, D., Dai, Q., Wu, Q., Giles, K. E., Townes, T. M., and Wang, H. (2014) The histone H2A deubiquitinase Usp16 regulates embryonic stem cell gene expression and lineage commitment. Nat. Commun. 5, 3818.
-
(2014)
Nat. Commun.
, vol.5
, pp. 3818
-
-
Yang, W.1
Lee, Y.H.2
Jones, A.E.3
Woolnough, J.L.4
Zhou, D.5
Dai, Q.6
Wu, Q.7
Giles, K.E.8
Townes, T.M.9
Wang, H.10
-
57
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar, R., Domrachev, M., and Lash, A. E. (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30, 207-210.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
58
-
-
79959813870
-
A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins
-
Kishore, S., Jaskiewicz, L., Burger, L., Hausser, J., Khorshid, M., and Zavolan, M. (2011) A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins. Nat. Methods 8, 559-564.
-
(2011)
Nat. Methods
, vol.8
, pp. 559-564
-
-
Kishore, S.1
Jaskiewicz, L.2
Burger, L.3
Hausser, J.4
Khorshid, M.5
Zavolan, M.6
-
59
-
-
67650727366
-
VARNA: Interactive drawing and editing of the RNA secondary structure
-
Darty, K., Denise, A., and Ponty, Y. (2009) VARNA: Interactive drawing and editing of the RNA secondary structure. Bioinformatics 25, 1974-1975.
-
(2009)
Bioinformatics
, vol.25
, pp. 1974-1975
-
-
Darty, K.1
Denise, A.2
Ponty, Y.3
-
60
-
-
34250159524
-
Genomewide mapping of in vivo protein-DNA interactions
-
Johnson, D. S., Mortazavi, A., Myers, R. M., and Wold, B. (2007) Genomewide mapping of in vivo protein-DNA interactions. Science 316, 1497-1502.
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
|