메뉴 건너뛰기




Volumn 12, Issue 7, 2016, Pages

Temporal Shift of Circadian-Mediated Gene Expression and Carbon Fixation Contributes to Biomass Heterosis in Maize Hybrids

Author keywords

[No Author keywords available]

Indexed keywords

STARCH; ARABIDOPSIS PROTEIN; CCA1 PROTEIN, ARABIDOPSIS; TRANSCRIPTION FACTOR;

EID: 84982812066     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1006197     Document Type: Article
Times cited : (95)

References (89)
  • 1
    • 84877658412 scopus 로고    scopus 로고
    • Progress toward understanding heterosis in crop plants
    • 23394499, .;:–. Epub 2013/02/12
    • Schnable PS, Springer NM, Progress toward understanding heterosis in crop plants. Annu Rev Plant Biol. 2013;64:71–88. Epub 2013/02/12. doi: 10.1146/annurev-arplant-042110-10382723394499.
    • (2013) Annu Rev Plant Biol , vol.64 , pp. 71-88
    • Schnable, P.S.1    Springer, N.M.2
  • 2
    • 0035220732 scopus 로고    scopus 로고
    • Biotechnology in the 1930s: the development of hybrid maize
    • 11253074, .;():–
    • Duvick DN, Biotechnology in the 1930s: the development of hybrid maize. Nat Rev Genet. 2001;2(1):69–74. 11253074.
    • (2001) Nat Rev Genet , vol.2 , Issue.1 , pp. 69-74
    • Duvick, D.N.1
  • 3
    • 77956795823 scopus 로고    scopus 로고
    • Heterosis
    • 20622146, .;():–. Epub 2010/07/14. tpc.110.076133 [pii]; PubMed Central PMCID: PMC2929104
    • Birchler JA, Yao H, Chudalayandi S, Vaiman D, Veitia RA, Heterosis. Plant Cell. 2010;22(7):2105–12. Epub 2010/07/14. tpc.110.076133 [pii] doi: 10.1105/tpc.110.07613320622146; PubMed Central PMCID: PMC2929104.
    • (2010) Plant Cell , vol.22 , Issue.7 , pp. 2105-2112
    • Birchler, J.A.1    Yao, H.2    Chudalayandi, S.3    Vaiman, D.4    Veitia, R.A.5
  • 4
    • 79551529430 scopus 로고    scopus 로고
    • A unifying theory for general multigenic heterosis: energy efficiency, protein metabolism, and implications for molecular breeding
    • 21166808, .;():–. Epub 2010/12/21
    • Goff SA, A unifying theory for general multigenic heterosis: energy efficiency, protein metabolism, and implications for molecular breeding. New Phytol. 2011;189(4):923–37. Epub 2010/12/21. doi: 10.1111/j.1469-8137.2010.03574.x21166808.
    • (2011) New Phytol , vol.189 , Issue.4 , pp. 923-937
    • Goff, S.A.1
  • 5
    • 84879412664 scopus 로고    scopus 로고
    • Genomic and epigenetic insights into the molecular bases of heterosis
    • 23752794, .;():–. Epub 2013/06/12
    • Chen ZJ, Genomic and epigenetic insights into the molecular bases of heterosis. Nat Rev Genet. 2013;14(7):471–82. Epub 2013/06/12. doi: 10.1038/nrg350323752794.
    • (2013) Nat Rev Genet , vol.14 , Issue.7 , pp. 471-482
    • Chen, Z.J.1
  • 6
    • 33847701258 scopus 로고    scopus 로고
    • Allelic variation and heterosis in maize: how do two halves make more than a whole?
    • 17255553, .;():–
    • Springer NM, Stupar RM, Allelic variation and heterosis in maize: how do two halves make more than a whole?Genome Res. 2007;17(3):264–75. 17255553.
    • (2007) Genome Res , vol.17 , Issue.3 , pp. 264-275
    • Springer, N.M.1    Stupar, R.M.2
  • 7
    • 33747866029 scopus 로고    scopus 로고
    • Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid
    • 16702414, .;():–
    • Stupar RM, Springer NM, Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid. Genetics. 2006;173(4):2199–210. 16702414.
    • (2006) Genetics , vol.173 , Issue.4 , pp. 2199-2210
    • Stupar, R.M.1    Springer, N.M.2
  • 8
    • 33646486694 scopus 로고    scopus 로고
    • All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents
    • 16641103, .;():–
    • Swanson-Wagner RA, Jia Y, DeCook R, Borsuk LA, Nettleton D, Schnable PS, All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. Proc Natl Acad Sci U S A. 2006;103(18):6805–10. 16641103.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , Issue.18 , pp. 6805-6810
    • Swanson-Wagner, R.A.1    Jia, Y.2    DeCook, R.3    Borsuk, L.A.4    Nettleton, D.5    Schnable, P.S.6
  • 9
    • 58249105076 scopus 로고    scopus 로고
    • Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids
    • 19029881, ..;():–
    • Ni Z, Kim ED, Ha M, Lackey E, Liu J, Zhang Y, et al. Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids. Nature. 2009;457(7227):327–31. 19029881doi: 10.1038/nature07523
    • (2009) Nature , vol.457 , Issue.7227 , pp. 327-331
    • Ni, Z.1    Kim, E.D.2    Ha, M.3    Lackey, E.4    Liu, J.5    Zhang, Y.6
  • 10
    • 84904965875 scopus 로고    scopus 로고
    • A Role for CHH Methylation in the Parent-of-Origin Effect on Altered Circadian Rhythms and Biomass Heterosis in Arabidopsis Intraspecific Hybrids
    • 24894042, ..;():–. Epub 2014/06/05
    • Ng DW, Miller M, Yu HH, Huang TY, Kim ED, Lu J, et al. A Role for CHH Methylation in the Parent-of-Origin Effect on Altered Circadian Rhythms and Biomass Heterosis in Arabidopsis Intraspecific Hybrids. Plant Cell. 2014;26(6):2430–40. Epub 2014/06/05. doi: 10.1105/tpc.113.11598024894042.
    • (2014) Plant Cell , vol.26 , Issue.6 , pp. 2430-2440
    • Ng, D.W.1    Miller, M.2    Yu, H.H.3    Huang, T.Y.4    Kim, E.D.5    Lu, J.6
  • 11
    • 84879420693 scopus 로고    scopus 로고
    • Ploidy and hybridity effects on growth vigor and gene expression in Arabidopsis thaliana hybrids and their parents
    • 22540042, .;():–. Epub 2012/04/28.[pii].; PubMed Central PMCID: PMC3337479
    • Miller M, Zhang C, Chen ZJ, Ploidy and hybridity effects on growth vigor and gene expression in Arabidopsis thaliana hybrids and their parents. G3 (Bethesda). 2012;2(4):505–13. Epub 2012/04/28. doi: 10.1534/g3.112.002162 [pii]. 22540042; PubMed Central PMCID: PMC3337479.
    • (2012) G3 (Bethesda) , vol.2 , Issue.4 , pp. 505-513
    • Miller, M.1    Zhang, C.2    Chen, Z.J.3
  • 12
    • 66449087281 scopus 로고    scopus 로고
    • The circadian system in higher plants
    • 19575587, .;:–. Epub 2009/07/07
    • Harmer SL, The circadian system in higher plants. Annu Rev Plant Biol. 2009;60:357–77. Epub 2009/07/07. doi: 10.1146/annurev.arplant.043008.09205419575587.
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 357-377
    • Harmer, S.L.1
  • 13
    • 33745456764 scopus 로고    scopus 로고
    • Plant circadian rhythms
    • 16595397, .;():–
    • McClung CR, Plant circadian rhythms. Plant Cell. 2006;18(4):792–803. 16595397.
    • (2006) Plant Cell , vol.18 , Issue.4 , pp. 792-803
    • McClung, C.R.1
  • 14
    • 22744451756 scopus 로고    scopus 로고
    • Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage
    • 16040710, ..;():–
    • Dodd AN, Salathia N, Hall A, Kevei E, Toth R, Nagy F, et al. Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage. Science. 2005;309(5734):630–3. 16040710.
    • (2005) Science , vol.309 , Issue.5734 , pp. 630-633
    • Dodd, A.N.1    Salathia, N.2    Hall, A.3    Kevei, E.4    Toth, R.5    Nagy, F.6
  • 15
    • 0035983622 scopus 로고    scopus 로고
    • Circadian rhythms confer a higher level of fitness to Arabidopsis plants
    • 12068102, .;():–
    • Green RM, Tingay S, Wang ZY, Tobin EM, Circadian rhythms confer a higher level of fitness to Arabidopsis plants. Plant Physiol. 2002;129(2):576–84. 12068102.
    • (2002) Plant Physiol , vol.129 , Issue.2 , pp. 576-584
    • Green, R.M.1    Tingay, S.2    Wang, Z.Y.3    Tobin, E.M.4
  • 16
    • 77952704133 scopus 로고    scopus 로고
    • Circadian control of carbohydrate availability for growth in Arabidopsis plants at night
    • 20439704, .;():–. Epub 2010/05/05. 0914299107 [pii]; PubMed Central PMCID: PMC2889127
    • Graf A, Schlereth A, Stitt M, Smith AM, Circadian control of carbohydrate availability for growth in Arabidopsis plants at night. Proc Natl Acad Sci USA. 2010;107(20):9458–63. Epub 2010/05/05. 0914299107 [pii] doi: 10.1073/pnas.091429910720439704; PubMed Central PMCID: PMC2889127.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.20 , pp. 9458-9463
    • Graf, A.1    Schlereth, A.2    Stitt, M.3    Smith, A.M.4
  • 17
    • 33846601810 scopus 로고    scopus 로고
    • Modulation of environmental responses of plants by circadian clocks
    • 17263778, ..;():–. Epub 2007/02/01. PCE1627 [pii]
    • Hotta CT, Gardner MJ, Hubbard KE, Baek SJ, Dalchau N, Suhita D, et al. Modulation of environmental responses of plants by circadian clocks. Plant Cell Environ. 2007;30(3):333–49. Epub 2007/02/01. PCE1627 [pii] doi: 10.1111/j.1365-3040.2006.01627.x17263778.
    • (2007) Plant Cell Environ , vol.30 , Issue.3 , pp. 333-349
    • Hotta, C.T.1    Gardner, M.J.2    Hubbard, K.E.3    Baek, S.J.4    Dalchau, N.5    Suhita, D.6
  • 18
    • 84858681457 scopus 로고    scopus 로고
    • Arabidopsis synchronizes jasmonate-mediated defense with insect circadian behavior
    • 22331878, .;():–. Epub 2012/02/15. 1116368109 [pii]; PubMed Central PMCID: PMC3311395
    • Goodspeed D, Chehab EW, Min-Venditti A, Braam J, Covington MF, Arabidopsis synchronizes jasmonate-mediated defense with insect circadian behavior. Proc Natl Acad Sci USA. 2012;109(12):4674–7. Epub 2012/02/15. 1116368109 [pii] doi: 10.1073/pnas.111636810922331878; PubMed Central PMCID: PMC3311395.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.12 , pp. 4674-4677
    • Goodspeed, D.1    Chehab, E.W.2    Min-Venditti, A.3    Braam, J.4    Covington, M.F.5
  • 19
    • 79551662808 scopus 로고    scopus 로고
    • Timing of plant immune responses by a central circadian regulator
    • 21293378, ..;():–. Epub 2011/02/05. nature09766 [pii]
    • Wang W, Barnaby JY, Tada Y, Li H, Tor M, Caldelari D, et al. Timing of plant immune responses by a central circadian regulator. Nature. 2011;470(7332):110–4. Epub 2011/02/05. nature09766 [pii] doi: 10.1038/nature0976621293378.
    • (2011) Nature , vol.470 , Issue.7332 , pp. 110-114
    • Wang, W.1    Barnaby, J.Y.2    Tada, Y.3    Li, H.4    Tor, M.5    Caldelari, D.6
  • 20
    • 18744413036 scopus 로고    scopus 로고
    • Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock
    • 15728337, .;():–. Epub 2005/02/25. pp.104.058354 [pii]; PubMed Central PMCID: PMC1065397
    • Fowler SG, Cook D, Thomashow MF, Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock. Plant Physiol. 2005;137(3):961–8. Epub 2005/02/25. pp.104.058354 [pii] doi: 10.1104/pp.104.05835415728337; PubMed Central PMCID: PMC1065397.
    • (2005) Plant Physiol , vol.137 , Issue.3 , pp. 961-968
    • Fowler, S.G.1    Cook, D.2    Thomashow, M.F.3
  • 21
    • 78751566502 scopus 로고    scopus 로고
    • Four easy pieces: mechanisms underlying circadian regulation of growth and development
    • 20943429, .. Epub 2010/10/15. S1369-5266(10)00128-7 [pii]
    • Thines B, Harmon FG, Four easy pieces: mechanisms underlying circadian regulation of growth and development. Curr Opin Plant Biol. 2010. Epub 2010/10/15. S1369-5266(10)00128-7 [pii] doi: 10.1016/j.pbi.2010.09.00920943429.
    • (2010) Curr Opin Plant Biol
    • Thines, B.1    Harmon, F.G.2
  • 22
    • 34447520296 scopus 로고    scopus 로고
    • Rhythmic growth explained by coincidence between internal and external cues
    • 17589502, ..;():–. Epub 2007/06/26. nature05946 [pii]
    • Nozue K, Covington MF, Duek PD, Lorrain S, Fankhauser C, Harmer SL, et al. Rhythmic growth explained by coincidence between internal and external cues. Nature. 2007;448(7151):358–61. Epub 2007/06/26. nature05946 [pii] doi: 10.1038/nature0594617589502.
    • (2007) Nature , vol.448 , Issue.7151 , pp. 358-361
    • Nozue, K.1    Covington, M.F.2    Duek, P.D.3    Lorrain, S.4    Fankhauser, C.5    Harmer, S.L.6
  • 23
    • 34548206704 scopus 로고    scopus 로고
    • The circadian clock regulates auxin signaling and responses in Arabidopsis
    • 17683202, .;():
    • Covington MF, Harmer SL, The circadian clock regulates auxin signaling and responses in Arabidopsis. PLoS Biol. 2007;5(8):e222. 17683202.
    • (2007) PLoS Biol , vol.5 , Issue.8 , pp. e222
    • Covington, M.F.1    Harmer, S.L.2
  • 24
    • 0346258011 scopus 로고    scopus 로고
    • Gating of the rapid shade-avoidance response by the circadian clock in plants
    • 14668869, .;():–
    • Salter MG, Franklin KA, Whitelam GC, Gating of the rapid shade-avoidance response by the circadian clock in plants. Nature. 2003;426(6967):680–3. 14668869.
    • (2003) Nature , vol.426 , Issue.6967 , pp. 680-683
    • Salter, M.G.1    Franklin, K.A.2    Whitelam, G.C.3
  • 25
    • 79959327617 scopus 로고    scopus 로고
    • Circadian oscillation of gibberellin signaling in Arabidopsis
    • 21576475, .;():–.; PubMed Central PMCID: PMC3107313
    • Arana MV, Marin-de la Rosa N, Maloof JN, Blazquez MA, Alabadi D, Circadian oscillation of gibberellin signaling in Arabidopsis. Proc Natl Acad Sci U S A. 2011;108(22):9292–7. doi: 10.1073/pnas.110105010821576475; PubMed Central PMCID: PMC3107313.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.22 , pp. 9292-9297
    • Arana, M.V.1    Marin-de la Rosa, N.2    Maloof, J.N.3    Blazquez, M.A.4    Alabadi, D.5
  • 26
    • 0002404960 scopus 로고    scopus 로고
    • Anatomical and ultrastructural changes associated with sink-to-source transition in developing maize leaves
    • .;:–
    • Evert RF, Russin WA, Bosabalidis AM, Anatomical and ultrastructural changes associated with sink-to-source transition in developing maize leaves. Int J Plant Sci. 1996;157:247–61.
    • (1996) Int J Plant Sci , vol.157 , pp. 247-261
    • Evert, R.F.1    Russin, W.A.2    Bosabalidis, A.M.3
  • 27
    • 0001577786 scopus 로고
    • Diurnal Changes in Maize Leaf Photosynthesis: III. Leaf Elongation Rate in Relation to Carbohydrates and Activities of Sucrose Metabolizing Enzymes in Elongating Leaf Tissue
    • 16665239, .;():–. Epub 1987/02/01.; PubMed Central PMCID: PMC1056351
    • Kalt-Torres W, Huber SC, Diurnal Changes in Maize Leaf Photosynthesis: III. Leaf Elongation Rate in Relation to Carbohydrates and Activities of Sucrose Metabolizing Enzymes in Elongating Leaf Tissue. Plant Physiol. 1987;83(2):294–8. Epub 1987/02/01. 16665239; PubMed Central PMCID: PMC1056351.
    • (1987) Plant Physiol , vol.83 , Issue.2 , pp. 294-298
    • Kalt-Torres, W.1    Huber, S.C.2
  • 28
    • 33846079112 scopus 로고    scopus 로고
    • Leaf growth rate per unit thermal time follows QTL-dependent daily patterns in hundreds of maize lines under naturally fluctuating conditions
    • 17238905, .;():–
    • Sadok W, Naudin P, Boussuge B, Muller B, Welcker C, Tardieu F, Leaf growth rate per unit thermal time follows QTL-dependent daily patterns in hundreds of maize lines under naturally fluctuating conditions. Plant Cell Environ. 2007;30(2):135–46. doi: 10.1111/j.1365-3040.2006.01611.x17238905.
    • (2007) Plant Cell Environ , vol.30 , Issue.2 , pp. 135-146
    • Sadok, W.1    Naudin, P.2    Boussuge, B.3    Muller, B.4    Welcker, C.5    Tardieu, F.6
  • 29
    • 77957592239 scopus 로고    scopus 로고
    • Coordination of the maize transcriptome by a conserved circadian clock
    • 20576144, .;:. Epub 2010/06/26. 1471-2229-10-126 [pii]
    • Khan S, Rowe SC, Harmon FG, Coordination of the maize transcriptome by a conserved circadian clock. BMC Plant Biol. 2010;10:126. Epub 2010/06/26. 1471-2229-10-126 [pii] doi: 10.1186/1471-2229-10-12620576144.
    • (2010) BMC Plant Biol , vol.10 , pp. 126
    • Khan, S.1    Rowe, S.C.2    Harmon, F.G.3
  • 30
    • 77958612183 scopus 로고    scopus 로고
    • Maize global transcriptomics reveals pervasive leaf diurnal rhythms but rhythms in developing ears are largely limited to the core oscillator
    • 20886102, .;():. Epub 2010/10/05.; PubMed Central PMCID: PMC2944807
    • Hayes KR, Beatty M, Meng X, Simmons CR, Habben JE, Danilevskaya ON, Maize global transcriptomics reveals pervasive leaf diurnal rhythms but rhythms in developing ears are largely limited to the core oscillator. PLoS One. 2010;5(9):e12887. Epub 2010/10/05. doi: 10.1371/journal.pone.001288720886102; PubMed Central PMCID: PMC2944807.
    • (2010) PLoS One , vol.5 , Issue.9 , pp. e12887
    • Hayes, K.R.1    Beatty, M.2    Meng, X.3    Simmons, C.R.4    Habben, J.E.5    Danilevskaya, O.N.6
  • 31
    • 57849139821 scopus 로고    scopus 로고
    • The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots
    • 19095940, ..;():–
    • James AB, Monreal JA, Nimmo GA, Kelly CL, Herzyk P, Jenkins GI, et al. The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots. Science. 2008;322(5909):1832–5. 19095940doi: 10.1126/science.1161403
    • (2008) Science , vol.322 , Issue.5909 , pp. 1832-1835
    • James, A.B.1    Monreal, J.A.2    Nimmo, G.A.3    Kelly, C.L.4    Herzyk, P.5    Jenkins, G.I.6
  • 32
    • 80053632751 scopus 로고    scopus 로고
    • Coincident light and clock regulation of pseudoresponse regulator protein 37 (PRR37) controls photoperiodic flowering in sorghum
    • 21930910, ..;():–. Epub 2011/09/21. 1106212108 [pii]; PubMed Central PMCID: PMC3182727
    • Murphy RL, Klein RR, Morishige DT, Brady JA, Rooney WL, Miller FR, et al. Coincident light and clock regulation of pseudoresponse regulator protein 37 (PRR37) controls photoperiodic flowering in sorghum. Proc Natl Acad Sci U S A. 2011;108(39):16469–74. Epub 2011/09/21. 1106212108 [pii] doi: 10.1073/pnas.110621210821930910; PubMed Central PMCID: PMC3182727.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.39 , pp. 16469-16474
    • Murphy, R.L.1    Klein, R.R.2    Morishige, D.T.3    Brady, J.A.4    Rooney, W.L.5    Miller, F.R.6
  • 33
    • 84878652080 scopus 로고    scopus 로고
    • The circadian clock-associated gene gigantea1 affects maize developmental transitions
    • WOS:000319875100012, .;():–
    • Bendix C, Mendoza JM, Stanley DN, Meeley R, Harmon FG, The circadian clock-associated gene gigantea1 affects maize developmental transitions. Plant Cell Environ. 2013;36(7):1379–90. doi: 10.1111/Pce.12067WOS:000319875100012.
    • (2013) Plant Cell Environ , vol.36 , Issue.7 , pp. 1379-1390
    • Bendix, C.1    Mendoza, J.M.2    Stanley, D.N.3    Meeley, R.4    Harmon, F.G.5
  • 34
    • 78649853497 scopus 로고    scopus 로고
    • Comparative transcriptional profiling and preliminary study on heterosis mechanism of super-hybrid rice
    • 20729474, ..;():–. Epub 2010/08/24. ssq046 [pii]; PubMed Central PMCID: PMC2993235
    • Song GS, Zhai HL, Peng YG, Zhang L, Wei G, Chen XY, et al. Comparative transcriptional profiling and preliminary study on heterosis mechanism of super-hybrid rice. Mol Plant. 2010;3(6):1012–25. Epub 2010/08/24. ssq046 [pii] doi: 10.1093/mp/ssq04620729474; PubMed Central PMCID: PMC2993235.
    • (2010) Mol Plant , vol.3 , Issue.6 , pp. 1012-1025
    • Song, G.S.1    Zhai, H.L.2    Peng, Y.G.3    Zhang, L.4    Wei, G.5    Chen, X.Y.6
  • 35
    • 79958225100 scopus 로고    scopus 로고
    • A map-based cloning strategy employing a residual heterozygous line reveals that the GIGANTEA gene is involved in soybean maturity and flowering
    • 21406680, ..;():–.; PubMed Central PMCID: PMC3122305
    • Watanabe S, Xia Z, Hideshima R, Tsubokura Y, Sato S, Yamanaka N, et al. A map-based cloning strategy employing a residual heterozygous line reveals that the GIGANTEA gene is involved in soybean maturity and flowering. Genetics. 2011;188(2):395–407. doi: 10.1534/genetics.110.12506221406680; PubMed Central PMCID: PMC3122305.
    • (2011) Genetics , vol.188 , Issue.2 , pp. 395-407
    • Watanabe, S.1    Xia, Z.2    Hideshima, R.3    Tsubokura, Y.4    Sato, S.5    Yamanaka, N.6
  • 36
    • 84902078728 scopus 로고    scopus 로고
    • CONSTANS is a photoperiod regulated activator of flowering in sorghum
    • 24884377, .;:.; PubMed Central PMCID: PMC4046011
    • Yang S, Weers BD, Morishige DT, Mullet JE, CONSTANS is a photoperiod regulated activator of flowering in sorghum. BMC Plant Biol. 2014;14:148. doi: 10.1186/1471-2229-14-14824884377; PubMed Central PMCID: PMC4046011.
    • (2014) BMC Plant Biol , vol.14 , pp. 148
    • Yang, S.1    Weers, B.D.2    Morishige, D.T.3    Mullet, J.E.4
  • 37
    • 84947087027 scopus 로고    scopus 로고
    • Domestication selected for deceleration of the circadian clock in cultivated tomato
    • 26569124, ..;():–
    • Muller NA, Wijnen CL, Srinivasan A, Ryngajllo M, Ofner I, Lin T, et al. Domestication selected for deceleration of the circadian clock in cultivated tomato. Nat Genet. 2016;48(1):89–93. doi: 10.1038/ng.344726569124.
    • (2016) Nat Genet , vol.48 , Issue.1 , pp. 89-93
    • Muller, N.A.1    Wijnen, C.L.2    Srinivasan, A.3    Ryngajllo, M.4    Ofner, I.5    Lin, T.6
  • 38
    • 68449083317 scopus 로고    scopus 로고
    • The genetic architecture of maize flowering time
    • 19661422, ..;():–. Epub 2009/08/08. 325/5941/714 [pii]
    • Buckler ES, Holland JB, Bradbury PJ, Acharya CB, Brown PJ, Browne C, et al. The genetic architecture of maize flowering time. Science. 2009;325(5941):714–8. Epub 2009/08/08. 325/5941/714 [pii] doi: 10.1126/science.117427619661422.
    • (2009) Science , vol.325 , Issue.5941 , pp. 714-718
    • Buckler, E.S.1    Holland, J.B.2    Bradbury, P.J.3    Acharya, C.B.4    Brown, P.J.5    Browne, C.6
  • 39
    • 84868686736 scopus 로고    scopus 로고
    • PICARA, an analytical pipeline providing probabilistic inference about a priori candidates genes underlying genome-wide association QTL in plants
    • 23144785, .;():.; PubMed Central PMCID: PMC3492367
    • Chen C, DeClerck G, Tian F, Spooner W, McCouch S, Buckler E, PICARA, an analytical pipeline providing probabilistic inference about a priori candidates genes underlying genome-wide association QTL in plants. PLoS One. 2012;7(11):e46596. doi: 10.1371/journal.pone.004659623144785; PubMed Central PMCID: PMC3492367.
    • (2012) PLoS One , vol.7 , Issue.11 , pp. e46596
    • Chen, C.1    DeClerck, G.2    Tian, F.3    Spooner, W.4    McCouch, S.5    Buckler, E.6
  • 41
    • 0000712139 scopus 로고
    • Heterosis
    • 17246801, .;:–
    • East EM, Heterosis. Genetics. 1936;21:375–97. 17246801
    • (1936) Genetics , vol.21 , pp. 375-397
    • East, E.M.1
  • 42
    • 78649488563 scopus 로고    scopus 로고
    • The developmental dynamics of the maize leaf transcriptome
    • 21037569, ..;():–. Epub 2010/11/03. ng.703 [pii]
    • Li P, Ponnala L, Gandotra N, Wang L, Si Y, Tausta SL, et al. The developmental dynamics of the maize leaf transcriptome. Nat Genet. 2010;42(12):1060–7. Epub 2010/11/03. ng.703 [pii] doi: 10.1038/ng.70321037569.
    • (2010) Nat Genet , vol.42 , Issue.12 , pp. 1060-1067
    • Li, P.1    Ponnala, L.2    Gandotra, N.3    Wang, L.4    Si, Y.5    Tausta, S.L.6
  • 43
    • 84856421612 scopus 로고    scopus 로고
    • Systems analysis of a maize leaf developmental gradient redefines the current C4 model and provides candidates for regulation
    • 22186372, ..;():–.; PubMed Central PMCID: PMC3269860
    • Pick TR, Brautigam A, Schluter U, Denton AK, Colmsee C, Scholz U, et al. Systems analysis of a maize leaf developmental gradient redefines the current C4 model and provides candidates for regulation. Plant Cell. 2011;23(12):4208–20. doi: 10.1105/tpc.111.09032422186372; PubMed Central PMCID: PMC3269860.
    • (2011) Plant Cell , vol.23 , Issue.12 , pp. 4208-4220
    • Pick, T.R.1    Brautigam, A.2    Schluter, U.3    Denton, A.K.4    Colmsee, C.5    Scholz, U.6
  • 44
    • 70450202132 scopus 로고    scopus 로고
    • The b73 maize genome: complexity, diversity, and dynamics
    • 19965430, ..;():–. Epub 2009/12/08. 326/5956/1112 [pii]
    • Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, et al. The b73 maize genome: complexity, diversity, and dynamics. Science. 2009;326(5956):1112–5. Epub 2009/12/08. 326/5956/1112 [pii] doi: 10.1126/science.117853419965430.
    • (2009) Science , vol.326 , Issue.5956 , pp. 1112-1115
    • Schnable, P.S.1    Ware, D.2    Fulton, R.S.3    Stein, J.C.4    Wei, F.5    Pasternak, S.6
  • 45
    • 79952744855 scopus 로고    scopus 로고
    • Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
    • 21368132, .;():–. Epub 2011/03/04.; PubMed Central PMCID: PMC3053962
    • Schnable JC, Springer NM, Freeling M, Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc Natl Acad Sci U S A. 2011;108(10):4069–74. Epub 2011/03/04. doi: 10.1073/pnas.110136810821368132; PubMed Central PMCID: PMC3053962.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.10 , pp. 4069-4074
    • Schnable, J.C.1    Springer, N.M.2    Freeling, M.3
  • 46
    • 84864440018 scopus 로고    scopus 로고
    • A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis
    • 22715042, ..;():–. Epub 2012/06/21.; PubMed Central PMCID: PMC3406914
    • Seo PJ, Park MJ, Lim MH, Kim SG, Lee M, Baldwin IT, et al. A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis. Plant Cell. 2012;24(6):2427–42. Epub 2012/06/21. doi: 10.1105/tpc.112.09872322715042; PubMed Central PMCID: PMC3406914.
    • (2012) Plant Cell , vol.24 , Issue.6 , pp. 2427-2442
    • Seo, P.J.1    Park, M.J.2    Lim, M.H.3    Kim, S.G.4    Lee, M.5    Baldwin, I.T.6
  • 47
    • 84876533257 scopus 로고    scopus 로고
    • Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays
    • 23637782, ..;():.; PubMed Central PMCID: PMC3634062
    • Sekhon RS, Briskine R, Hirsch CN, Myers CL, Springer NM, Buell CR, et al. Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays. PLoS One. 2013;8(4):e61005. doi: 10.1371/journal.pone.006100523637782; PubMed Central PMCID: PMC3634062.
    • (2013) PLoS One , vol.8 , Issue.4 , pp. e61005
    • Sekhon, R.S.1    Briskine, R.2    Hirsch, C.N.3    Myers, C.L.4    Springer, N.M.5    Buell, C.R.6
  • 48
    • 84860109530 scopus 로고    scopus 로고
    • Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids
    • 22438023, ..;():–. Epub 2012/03/23. tpc.111.094870 [pii]; PubMed Central PMCID: PMC3336129
    • Shen H, He H, Li J, Chen W, Wang X, Guo L, et al. Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids. Plant Cell. 2012;24(3):875–92. Epub 2012/03/23. tpc.111.094870 [pii] doi: 10.1105/tpc.111.09487022438023; PubMed Central PMCID: PMC3336129.
    • (2012) Plant Cell , vol.24 , Issue.3 , pp. 875-892
    • Shen, H.1    He, H.2    Li, J.3    Chen, W.4    Wang, X.5    Guo, L.6
  • 49
    • 33644813858 scopus 로고    scopus 로고
    • Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis
    • 15923346, .;():–
    • Harmer SL, Kay SA, Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis. Plant Cell. 2005;17(7):1926–40. 15923346.
    • (2005) Plant Cell , vol.17 , Issue.7 , pp. 1926-1940
    • Harmer, S.L.1    Kay, S.A.2
  • 50
    • 0030138945 scopus 로고    scopus 로고
    • Ubiquitin promoter-based vectors for high-level expression of selectable and/or screenable marker genes in monocotyledonous plants
    • 8673150, .;():–. Epub 1996/05/01
    • Christensen AH, Quail PH, Ubiquitin promoter-based vectors for high-level expression of selectable and/or screenable marker genes in monocotyledonous plants. Transgenic Res. 1996;5(3):213–8. Epub 1996/05/01. 8673150.
    • (1996) Transgenic Res , vol.5 , Issue.3 , pp. 213-218
    • Christensen, A.H.1    Quail, P.H.2
  • 51
    • 84886953405 scopus 로고    scopus 로고
    • Photosynthetic entrainment of the Arabidopsis thaliana circadian clock
    • 24153186, .;():–. Epub 2013/10/25.; PubMed Central PMCID: PMC3827739
    • Haydon MJ, Mielczarek O, Robertson FC, Hubbard KE, Webb AA, Photosynthetic entrainment of the Arabidopsis thaliana circadian clock. Nature. 2013;502(7473):689–92. Epub 2013/10/25. doi: 10.1038/nature1260324153186; PubMed Central PMCID: PMC3827739.
    • (2013) Nature , vol.502 , Issue.7473 , pp. 689-692
    • Haydon, M.J.1    Mielczarek, O.2    Robertson, F.C.3    Hubbard, K.E.4    Webb, A.A.5
  • 52
    • 84867667011 scopus 로고    scopus 로고
    • Transcriptional architecture and chromatin landscape of the core circadian clock in mammals
    • 22936566, ..;():–. Epub 2012/09/01
    • Koike N, Yoo SH, Huang HC, Kumar V, Lee C, Kim TK, et al. Transcriptional architecture and chromatin landscape of the core circadian clock in mammals. Science. 2012;338(6105):349–54. Epub 2012/09/01. doi: 10.1126/science.122633922936566.
    • (2012) Science , vol.338 , Issue.6105 , pp. 349-354
    • Koike, N.1    Yoo, S.H.2    Huang, H.C.3    Kumar, V.4    Lee, C.5    Kim, T.K.6
  • 53
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of ChIP-Seq (MACS)
    • 18798982, ..;():.; PubMed Central PMCID: PMC2592715
    • Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. doi: 10.1186/gb-2008-9-9-r13718798982; PubMed Central PMCID: PMC2592715.
    • (2008) Genome Biol , vol.9 , Issue.9 , pp. R137
    • Zhang, Y.1    Liu, T.2    Meyer, C.A.3    Eeckhoute, J.4    Johnson, D.S.5    Bernstein, B.E.6
  • 54
    • 0024712231 scopus 로고
    • Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data
    • 2762323, .;():–.; PubMed Central PMCID: PMCPMC297805
    • Wolfe KH, Gouy M, Yang YW, Sharp PM, Li WH, Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc Natl Acad Sci U S A. 1989;86(16):6201–5. 2762323; PubMed Central PMCID: PMCPMC297805.
    • (1989) Proc Natl Acad Sci U S A , vol.86 , Issue.16 , pp. 6201-6205
    • Wolfe, K.H.1    Gouy, M.2    Yang, Y.W.3    Sharp, P.M.4    Li, W.H.5
  • 55
    • 34447506667 scopus 로고    scopus 로고
    • Quantifying similarity between motifs
    • 17324271, .;():.; PubMed Central PMCID: PMCPMC1852410
    • Gupta S, Stamatoyannopoulos JA, Bailey TL, Noble WS, Quantifying similarity between motifs. Genome Biol. 2007;8(2):R24. doi: 10.1186/gb-2007-8-2-r2417324271; PubMed Central PMCID: PMCPMC1852410.
    • (2007) Genome Biol , vol.8 , Issue.2 , pp. R24
    • Gupta, S.1    Stamatoyannopoulos, J.A.2    Bailey, T.L.3    Noble, W.S.4
  • 56
    • 0031803817 scopus 로고    scopus 로고
    • Involvement of maize Dof zinc finger proteins in tissue-specific and light-regulated gene expression
    • 9477573, .;():–.; PubMed Central PMCID: PMCPMC143930
    • Yanagisawa S, Sheen J, Involvement of maize Dof zinc finger proteins in tissue-specific and light-regulated gene expression. Plant Cell. 1998;10(1):75–89. 9477573; PubMed Central PMCID: PMCPMC143930.
    • (1998) Plant Cell , vol.10 , Issue.1 , pp. 75-89
    • Yanagisawa, S.1    Sheen, J.2
  • 57
    • 33845611615 scopus 로고    scopus 로고
    • Interplay of circadian clocks and metabolic rhythms
    • 17094740, .;:–
    • Wijnen H, Young MW, Interplay of circadian clocks and metabolic rhythms. Annu Rev Genet. 2006;40:409–48. 17094740.
    • (2006) Annu Rev Genet , vol.40 , pp. 409-448
    • Wijnen, H.1    Young, M.W.2
  • 58
    • 84864594234 scopus 로고    scopus 로고
    • Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids
    • 22487254, ..;():–. Epub 2012/04/11
    • Meyer RC, Witucka-Wall H, Becher M, Blacha A, Boudichevskaia A, Dormann P, et al. Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids. The Plant J. 2012;71(4):669–83. Epub 2012/04/11. doi: 10.1111/j.1365-313X.2012.05021.x22487254.
    • (2012) The Plant J , vol.71 , Issue.4 , pp. 669-683
    • Meyer, R.C.1    Witucka-Wall, H.2    Becher, M.3    Blacha, A.4    Boudichevskaia, A.5    Dormann, P.6
  • 59
    • 84860817093 scopus 로고    scopus 로고
    • Heterosis of Arabidopsis hybrids between C24 and Col is associated with increased photosynthesis capacity
    • 22493265, .;():–. Epub 2012/04/12.; PubMed Central PMCID: PMC3344962
    • Fujimoto R, Taylor JM, Shirasawa S, Peacock WJ, Dennis ES, Heterosis of Arabidopsis hybrids between C24 and Col is associated with increased photosynthesis capacity. Proc Natl Acad Sci USA. 2012;109(18):7109–14. Epub 2012/04/12. doi: 10.1073/pnas.120446410922493265; PubMed Central PMCID: PMC3344962.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.18 , pp. 7109-7114
    • Fujimoto, R.1    Taylor, J.M.2    Shirasawa, S.3    Peacock, W.J.4    Dennis, E.S.5
  • 60
    • 77953220837 scopus 로고    scopus 로고
    • Cell Number Regulator1 affects plant and organ size in maize: implications for crop yield enhancement and heterosis
    • 20400678, ..;():–. Epub 2010/04/20.; PubMed Central PMCID: PMC2879740
    • Guo M, Rupe MA, Dieter JA, Zou J, Spielbauer D, Duncan KE, et al. Cell Number Regulator1 affects plant and organ size in maize: implications for crop yield enhancement and heterosis. The Plant cell. 2010;22(4):1057–73. Epub 2010/04/20. doi: 10.1105/tpc.109.07367620400678; PubMed Central PMCID: PMC2879740.
    • (2010) The Plant cell , vol.22 , Issue.4 , pp. 1057-1073
    • Guo, M.1    Rupe, M.A.2    Dieter, J.A.3    Zou, J.4    Spielbauer, D.5    Duncan, K.E.6
  • 61
    • 75849147404 scopus 로고    scopus 로고
    • Gene expression analysis at the intersection of ploidy and hybridity in maize
    • 19657617, .;():–. Epub 2009/08/07
    • Riddle NC, Jiang H, An L, Doerge RW, Birchler JA, Gene expression analysis at the intersection of ploidy and hybridity in maize. Theor Appl Genet. 2010;120(2):341–53. Epub 2009/08/07. doi: 10.1007/s00122-009-1113-319657617.
    • (2010) Theor Appl Genet , vol.120 , Issue.2 , pp. 341-353
    • Riddle, N.C.1    Jiang, H.2    An, L.3    Doerge, R.W.4    Birchler, J.A.5
  • 62
    • 84907051280 scopus 로고    scopus 로고
    • Intraspecific Arabidopsis hybrids show different patterns of heterosis despite the close relatedness of the parental genomes
    • 25073707, ..;():–.; PubMed Central PMCID: PMC4149712
    • Groszmann M, Gonzalez-Bayon R, Greaves IK, Wang L, Huen AK, Peacock WJ, et al. Intraspecific Arabidopsis hybrids show different patterns of heterosis despite the close relatedness of the parental genomes. Plant Physiol. 2014;166(1):265–80. doi: 10.1104/pp.114.24399825073707; PubMed Central PMCID: PMC4149712.
    • (2014) Plant Physiol , vol.166 , Issue.1 , pp. 265-280
    • Groszmann, M.1    Gonzalez-Bayon, R.2    Greaves, I.K.3    Wang, L.4    Huen, A.K.5    Peacock, W.J.6
  • 63
    • 0035800467 scopus 로고    scopus 로고
    • Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock
    • 11486091, .;():–
    • Alabadi D, Oyama T, Yanovsky MJ, Harmon FG, Mas P, Kay SA, Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock. Science. 2001;293(5531):880–3. 11486091.
    • (2001) Science , vol.293 , Issue.5531 , pp. 880-883
    • Alabadi, D.1    Oyama, T.2    Yanovsky, M.J.3    Harmon, F.G.4    Mas, P.5    Kay, S.A.6
  • 64
    • 84863012419 scopus 로고    scopus 로고
    • CCA1 and ELF3 Interact in the control of hypocotyl length and flowering time in Arabidopsis
    • 22190341, .;():–. Epub 2011/12/23.; PubMed Central PMCID: PMC3271744
    • Lu SX, Webb CJ, Knowles SM, Kim SH, Wang Z, Tobin EM, CCA1 and ELF3 Interact in the control of hypocotyl length and flowering time in Arabidopsis. Plant Physiology. 2012;158(2):1079–88. Epub 2011/12/23. doi: 10.1104/pp.111.18967022190341; PubMed Central PMCID: PMC3271744.
    • (2012) Plant Physiology , vol.158 , Issue.2 , pp. 1079-1088
    • Lu, S.X.1    Webb, C.J.2    Knowles, S.M.3    Kim, S.H.4    Wang, Z.5    Tobin, E.M.6
  • 65
    • 11844289579 scopus 로고    scopus 로고
    • Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock
    • 15649364, .;():–
    • Farre EM, Harmer SL, Harmon FG, Yanovsky MJ, Kay SA, Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock. Curr Biol. 2005;15(1):47–54. 15649364.
    • (2005) Curr Biol , vol.15 , Issue.1 , pp. 47-54
    • Farre, E.M.1    Harmer, S.L.2    Harmon, F.G.3    Yanovsky, M.J.4    Kay, S.A.5
  • 66
    • 79955551575 scopus 로고    scopus 로고
    • CIRCADIAN CLOCK-ASSOCIATED 1 and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis
    • 21471455, .;():–. Epub 2011/04/08. 1103741108 [pii]; PubMed Central PMCID: PMC3084081
    • Dong MA, Farre EM, Thomashow MF, CIRCADIAN CLOCK-ASSOCIATED 1 and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis. Proc Natl Acad Sci USA. 2011;108(17):7241–6. Epub 2011/04/08. 1103741108 [pii] doi: 10.1073/pnas.110374110821471455; PubMed Central PMCID: PMC3084081.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.17 , pp. 7241-7246
    • Dong, M.A.1    Farre, E.M.2    Thomashow, M.F.3
  • 67
    • 0033616586 scopus 로고    scopus 로고
    • Loss of the circadian clock-associated protein 1 in Arabidopsis results in altered clock-regulated gene expression
    • 10097183, .;():–.; PubMed Central PMCID: PMC22440
    • Green RM, Tobin EM, Loss of the circadian clock-associated protein 1 in Arabidopsis results in altered clock-regulated gene expression. Proc Natl Acad Sci U S A. 1999;96(7):4176–9. 10097183; PubMed Central PMCID: PMC22440.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , Issue.7 , pp. 4176-4179
    • Green, R.M.1    Tobin, E.M.2
  • 68
    • 84947607252 scopus 로고    scopus 로고
    • Natural variation in timing of stress-responsive gene expression predicts heterosis in intraspecific hybrids of Arabidopsis
    • 26154604, .;:
    • Miller M, Song Q, Shi X, Juenger TE, Chen ZJ, Natural variation in timing of stress-responsive gene expression predicts heterosis in intraspecific hybrids of Arabidopsis. Nat Commun. 2015;6:7453. doi: 10.1038/ncomms845326154604.
    • (2015) Nat Commun , vol.6 , pp. 7453
    • Miller, M.1    Song, Q.2    Shi, X.3    Juenger, T.E.4    Chen, Z.J.5
  • 69
    • 66649134368 scopus 로고    scopus 로고
    • CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis
    • 19218364, .;():–. Epub 2009/02/17. pp.108.133272 [pii]; PubMed Central PMCID: PMC2689956
    • Lu SX, Knowles SM, Andronis C, Ong MS, Tobin EM, CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis. Plant Physiol. 2009;150(2):834–43. Epub 2009/02/17. pp.108.133272 [pii] doi: 10.1104/pp.108.13327219218364; PubMed Central PMCID: PMC2689956.
    • (2009) Plant Physiol , vol.150 , Issue.2 , pp. 834-843
    • Lu, S.X.1    Knowles, S.M.2    Andronis, C.3    Ong, M.S.4    Tobin, E.M.5
  • 70
    • 84863205849 scopus 로고    scopus 로고
    • NIH Image to ImageJ: 25 years of image analysis
    • ISI:000305942200020, .;():–
    • Schneider CA, Rasband WS, Eliceiri KW, NIH Image to ImageJ: 25 years of image analysis. Nature Methods. 2012;9(7):671–5. doi: 10.1038/Nmeth.2089ISI:000305942200020.
    • (2012) Nature Methods , vol.9 , Issue.7 , pp. 671-675
    • Schneider, C.A.1    Rasband, W.S.2    Eliceiri, K.W.3
  • 71
    • 0031159538 scopus 로고    scopus 로고
    • Quantitative analysis of Drosophila period gene transcription in living animals
    • 9181432, ..;():–. Epub 1997/06/01
    • Plautz JD, Straume M, Stanewsky R, Jamison CF, Brandes C, Dowse HB, et al. Quantitative analysis of Drosophila period gene transcription in living animals. Journal of biological rhythms. 1997;12(3):204–17. Epub 1997/06/01. 9181432.
    • (1997) Journal of biological rhythms , vol.12 , Issue.3 , pp. 204-217
    • Plautz, J.D.1    Straume, M.2    Stanewsky, R.3    Jamison, C.F.4    Brandes, C.5    Dowse, H.B.6
  • 72
    • 3242886403 scopus 로고    scopus 로고
    • Assessment of conditions affecting Agrobacterium-mediated soybean transformation using the cotyledonary node explant
    • .;:–
    • Paz MM, Shou H, Guo Z, Zhang Z, Banerjee AK, Wang K, Assessment of conditions affecting Agrobacterium-mediated soybean transformation using the cotyledonary node explant. Euphytica. 2004;136:167–79.
    • (2004) Euphytica , vol.136 , pp. 167-179
    • Paz, M.M.1    Shou, H.2    Guo, Z.3    Zhang, Z.4    Banerjee, A.K.5    Wang, K.6
  • 73
    • 84855269472 scopus 로고    scopus 로고
    • Gateway-compatible vectors for high-throughput gene functional analysis in switchgrass (Panicum virgatum L.) and other monocot species
    • 21955653, ..;():–
    • Mann DG, Lafayette PR, Abercrombie LL, King ZR, Mazarei M, Halter MC, et al. Gateway-compatible vectors for high-throughput gene functional analysis in switchgrass (Panicum virgatum L.) and other monocot species. Plant Biotechnol J. 2012;10(2):226–36. doi: 10.1111/j.1467-7652.2011.00658.x21955653.
    • (2012) Plant Biotechnol J , vol.10 , Issue.2 , pp. 226-236
    • Mann, D.G.1    Lafayette, P.R.2    Abercrombie, L.L.3    King, Z.R.4    Mazarei, M.5    Halter, M.C.6
  • 74
    • 0036000038 scopus 로고    scopus 로고
    • Agrobacterium tumefaciens-mediated transformation of maize embryos using a standard binary vector system
    • 12011333, ..;():–.; PubMed Central PMCID: PMCPMC1540222
    • Frame BR, Shou H, Chikwamba RK, Zhang Z, Xiang C, Fonger TM, et al. Agrobacterium tumefaciens-mediated transformation of maize embryos using a standard binary vector system. Plant Physiol. 2002;129(1):13–22. doi: 10.1104/pp.00065312011333; PubMed Central PMCID: PMCPMC1540222.
    • (2002) Plant Physiol , vol.129 , Issue.1 , pp. 13-22
    • Frame, B.R.1    Shou, H.2    Chikwamba, R.K.3    Zhang, Z.4    Xiang, C.5    Fonger, T.M.6
  • 75
    • 0024717888 scopus 로고
    • Molecular analysis of the ADH1-Cm allele of maize
    • 2577507, .;():–
    • Osterman JC, Dennis ES, Molecular analysis of the ADH1-Cm allele of maize. Plant Mol Biol. 1989;13(2):203–12. 2577507.
    • (1989) Plant Mol Biol , vol.13 , Issue.2 , pp. 203-212
    • Osterman, J.C.1    Dennis, E.S.2
  • 76
    • 0036143646 scopus 로고    scopus 로고
    • An evaluation of noninvasive methods to estimate foliar chlorophyll content
    • .;:–
    • Richardson AD, Duigan SP, Berlyn GP, An evaluation of noninvasive methods to estimate foliar chlorophyll content. New Phytol. 2002;153:185–94.
    • (2002) New Phytol , vol.153 , pp. 185-194
    • Richardson, A.D.1    Duigan, S.P.2    Berlyn, G.P.3
  • 78
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • 3447015, .;():–. Epub 1987/07/01
    • Saitou N, Nei M, The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4(4):406–25. Epub 1987/07/01. 3447015.
    • (1987) Mol Biol Evol , vol.4 , Issue.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 80
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: Molecular Evolutionary Genetics Analysis version 6.0
    • 24132122, .;():–.; PubMed Central PMCID: PMC3840312
    • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S, MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol. 2013;30(12):2725–9. doi: 10.1093/molbev/mst19724132122; PubMed Central PMCID: PMC3840312.
    • (2013) Mol Biol Evol , vol.30 , Issue.12 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 81
    • 44949085661 scopus 로고    scopus 로고
    • An efficient chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in Arabidopsis plants
    • 18536649, .;():–
    • Saleh A, Alvarez-Venegas R, Avramova Z, An efficient chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in Arabidopsis plants. Nat Protoc. 2008;3(6):1018–25. 18536649doi: 10.1038/nprot.2008.66
    • (2008) Nat Protoc , vol.3 , Issue.6 , pp. 1018-1025
    • Saleh, A.1    Alvarez-Venegas, R.2    Avramova, Z.3
  • 82
    • 84886516748 scopus 로고    scopus 로고
    • Dynamic expression of imprinted genes associates with maternally controlled nutrient allocation during maize endosperm development
    • 24058158, ..;():–. Epub 2013/09/24.; PubMed Central PMCID: PMC3809528
    • Xin M, Yang R, Li G, Chen H, Laurie J, Ma C, et al. Dynamic expression of imprinted genes associates with maternally controlled nutrient allocation during maize endosperm development. Plant Cell. 2013;25(9):3212–27. Epub 2013/09/24. doi: 10.1105/tpc.113.11559224058158; PubMed Central PMCID: PMC3809528.
    • (2013) Plant Cell , vol.25 , Issue.9 , pp. 3212-3227
    • Xin, M.1    Yang, R.2    Li, G.3    Chen, H.4    Laurie, J.5    Ma, C.6
  • 83
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • ISI:000302218500017, .;():–
    • Langmead B, Salzberg SL, Fast gapped-read alignment with Bowtie 2. Nature Methods. 2012;9(4):357–U54. doi: 10.1038/Nmeth.1923ISI:000302218500017.
    • (2012) Nature Methods , vol.9 , Issue.4 , pp. U54-357
    • Langmead, B.1    Salzberg, S.L.2
  • 84
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • ISI:000268808600014, ..;():–
    • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009;25(16):2078–9. doi: 10.1093/Bioinformatics/Btp352ISI:000268808600014.
    • (2009) Bioinformatics , vol.25 , Issue.16 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3    Fennell, T.4    Ruan, J.5    Homer, N.6
  • 85
    • 70349739736 scopus 로고    scopus 로고
    • The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
    • 19654113, .;():–.; PubMed Central PMCID: PMC2759552
    • Nicol JW, Helt GA, Blanchard SG, Jr.Raja A, Loraine AE, The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets. Bioinformatics. 2009;25(20):2730–1. doi: 10.1093/bioinformatics/btp47219654113; PubMed Central PMCID: PMC2759552.
    • (2009) Bioinformatics , vol.25 , Issue.20 , pp. 2730-2731
    • Nicol, J.W.1    Helt, G.A.2    Blanchard, S.G.3    Raja, A.4    Loraine, A.E.5
  • 86
    • 84900988020 scopus 로고    scopus 로고
    • deepTools: a flexible platform for exploring deep-sequencing data
    • 24799436, .;(Web Server issue):–.; PubMed Central PMCID: PMC4086134
    • Ramirez F, Dundar F, Diehl S, Gruning BA, Manke T, deepTools: a flexible platform for exploring deep-sequencing data. Nucleic Acids Res. 2014;42(Web Server issue):W187–91. doi: 10.1093/nar/gku36524799436; PubMed Central PMCID: PMC4086134.
    • (2014) Nucleic Acids Res , vol.42 , pp. W187-W191
    • Ramirez, F.1    Dundar, F.2    Diehl, S.3    Gruning, B.A.4    Manke, T.5
  • 87
    • 67849122320 scopus 로고    scopus 로고
    • MEME SUITE: tools for motif discovery and searching
    • 19458158, ..;(Web Server issue):–.; PubMed Central PMCID: PMC2703892
    • Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, et al. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 2009;37(Web Server issue):W202–8. doi: 10.1093/nar/gkp33519458158; PubMed Central PMCID: PMC2703892.
    • (2009) Nucleic Acids Res , vol.37 , pp. W202-W208
    • Bailey, T.L.1    Boden, M.2    Buske, F.A.3    Frith, M.4    Grant, C.E.5    Clementi, L.6
  • 88
    • 77954299992 scopus 로고    scopus 로고
    • agriGO: a GO analysis toolkit for the agricultural community
    • 20435677, .;(Web Server issue):–. Epub 2010/05/04.; PubMed Central PMCID: PMC2896167
    • Du Z, Zhou X, Ling Y, Zhang Z, Su Z, agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res. 2010;38(Web Server issue):W64–70. Epub 2010/05/04. doi: 10.1093/nar/gkq31020435677; PubMed Central PMCID: PMC2896167.
    • (2010) Nucleic Acids Res , vol.38 , pp. W64-70
    • Du, Z.1    Zhou, X.2    Ling, Y.3    Zhang, Z.4    Su, Z.5
  • 89
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
    • 10069079, .;:–
    • Clough SJ, Bent AF, Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 1998;16:735–43. 10069079
    • (1998) Plant J , vol.16 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.