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Volumn 353, Issue 6304, 2016, Pages

Specification of tissue-resident macrophages during organogenesis

Author keywords

[No Author keywords available]

Indexed keywords

INHIBITOR OF DIFFERENTIATION 3; CHEMOKINE RECEPTOR; CX3CR1 PROTEIN, MOUSE; IDB3 PROTEIN, MOUSE; INHIBITOR OF DIFFERENTIATION PROTEIN; TRANSCRIPTOME;

EID: 84981489685     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.aaf4238     Document Type: Article
Times cited : (609)

References (55)
  • 1
    • 84933677570 scopus 로고    scopus 로고
    • Distinct sources of hematopoietic progenitors emerge before HSCs and provide functional blood cells in the mammalian embryo
    • pmid: 26095363
    • K. E. McGrath et al., Distinct sources of hematopoietic progenitors emerge before HSCs and provide functional blood cells in the mammalian embryo. Cell Reports 11, 1892-1904 (2015). doi: 10.1016/j.celrep.2015.05.036; pmid: 26095363
    • (2015) Cell Reports , vol.11 , pp. 1892-1904
    • McGrath, K.E.1
  • 2
    • 84925465211 scopus 로고    scopus 로고
    • Tissue-resident macrophages originate from yolk-sac-derived erythro-myeloid progenitors
    • pmid: 25470051
    • E. Gomez Perdiguero et al., Tissue-resident macrophages originate from yolk-sac-derived erythro-myeloid progenitors. Nature 518, 547-551 (2015). doi: 10.1038/nature13989; pmid: 25470051
    • (2015) Nature , vol.518 , pp. 547-551
    • Gomez Perdiguero, E.1
  • 3
    • 84876775203 scopus 로고    scopus 로고
    • Tissue-resident macrophages self-maintain locally throughout adult life with minimal contribution from circulating monocytes
    • pmid: 23601688
    • D. Hashimoto et al., Tissue-resident macrophages self-maintain locally throughout adult life with minimal contribution from circulating monocytes. Immunity 38, 792-804 (2013). doi: 10.1016/j.immuni.2013.04.004; pmid: 23601688
    • (2013) Immunity , vol.38 , pp. 792-804
    • Hashimoto, D.1
  • 4
    • 84872765982 scopus 로고    scopus 로고
    • Fate mapping reveals origins and dynamics of monocytes and tissue macrophages under homeostasis
    • pmid: 23273845
    • S. Yona et al., Fate mapping reveals origins and dynamics of monocytes and tissue macrophages under homeostasis. Immunity 38, 79-91 (2013). doi: 10.1016/j.immuni.2012.12.001; pmid: 23273845
    • (2013) Immunity , vol.38 , pp. 79-91
    • Yona, S.1
  • 5
    • 84859508307 scopus 로고    scopus 로고
    • A lineage of myeloid cells independent of Myb and hematopoietic stem cells
    • pmid: 22442384
    • C. Schulz et al., A lineage of myeloid cells independent of Myb and hematopoietic stem cells. Science 336, 86-90 (2012). doi: 10.1126/science.1219179; pmid: 22442384
    • (2012) Science , vol.336 , pp. 86-90
    • Schulz, C.1
  • 6
    • 79960706327 scopus 로고    scopus 로고
    • A quantifiable proliferative burst of tissue macrophages restores homeostatic macrophage populations after acute inflammation
    • pmid: 21710478
    • L. C. Davies et al., A quantifiable proliferative burst of tissue macrophages restores homeostatic macrophage populations after acute inflammation. Eur. J. Immunol. 41, 2155-2164 (2011). doi: 10.1002/eji.201141817; pmid: 21710478
    • (2011) Eur. J. Immunol. , vol.41 , pp. 2155-2164
    • Davies, L.C.1
  • 7
    • 84920724791 scopus 로고    scopus 로고
    • Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment
    • pmid: 25480296
    • Y. Lavin et al., Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment. Cell 159, 1312-1326 (2014). doi: 10.1016/j.cell.2014.11.018; pmid: 25480296
    • (2014) Cell , vol.159 , pp. 1312-1326
    • Lavin, Y.1
  • 8
    • 84920724792 scopus 로고    scopus 로고
    • Environment drives selection and function of enhancers controlling tissue-specific macrophage identities
    • pmid: 25480297
    • D. Gosselin et al., Environment drives selection and function of enhancers controlling tissue-specific macrophage identities. Cell 159, 1327-1340 (2014). doi: 10.1016/j.cell.2014.11.023; pmid: 25480297
    • (2014) Cell , vol.159 , pp. 1327-1340
    • Gosselin, D.1
  • 9
    • 84900413094 scopus 로고    scopus 로고
    • Tissue-specific signals control reversible program of localization and functional polarization of macrophages
    • pmid: 24792964
    • Y. Okabe, R. Medzhitov, Tissue-specific signals control reversible program of localization and functional polarization of macrophages. Cell 157, 832-844 (2014). doi: 10.1016/j.cell.2014.04.016; pmid: 24792964
    • (2014) Cell , vol.157 , pp. 832-844
    • Okabe, Y.1    Medzhitov, R.2
  • 10
    • 84900386841 scopus 로고    scopus 로고
    • The transcription factor Gata6 links tissue macrophage phenotype and proliferative renewal
    • pmid: 24762537
    • M. Rosas et al., The transcription factor Gata6 links tissue macrophage phenotype and proliferative renewal. Science 344, 645-648 (2014). doi: 10.1126/science.1251414; pmid: 24762537
    • (2014) Science , vol.344 , pp. 645-648
    • Rosas, M.1
  • 11
    • 84940984138 scopus 로고    scopus 로고
    • Most tissue-resident macrophages except microglia are derived from fetal hematopoietic stem cells
    • pmid: 26287683
    • J. Sheng, C. Ruedl, K. Karjalainen, Most tissue-resident macrophages except microglia are derived from fetal hematopoietic stem cells. Immunity 43, 382-393 (2015). doi: 10.1016/j.immuni.2015.07.016; pmid: 26287683
    • (2015) Immunity , vol.43 , pp. 382-393
    • Sheng, J.1    Ruedl, C.2    Karjalainen, K.3
  • 12
    • 84928189502 scopus 로고    scopus 로고
    • + erythro-myeloid progenitor-derived fetal monocytes give rise to adult tissue-resident macrophages
    • pmid: 25902481
    • + erythro-myeloid progenitor-derived fetal monocytes give rise to adult tissue-resident macrophages. Immunity 42, 665-678 (2015). doi: 10.1016/j.immuni.2015.03.011; pmid: 25902481
    • (2015) Immunity , vol.42 , pp. 665-678
    • Hoeffel, G.1
  • 13
    • 78149360132 scopus 로고    scopus 로고
    • Fate mapping analysis reveals that adult microglia derive from primitive macrophages
    • pmid: 20966214
    • F. Ginhoux et al., Fate mapping analysis reveals that adult microglia derive from primitive macrophages. Science 330, 841-845 (2010). doi: 10.1126/science.1194637; pmid: 20966214
    • (2010) Science , vol.330 , pp. 841-845
    • Ginhoux, F.1
  • 14
    • 84904407541 scopus 로고    scopus 로고
    • Gata6 regulates aspartoacylase expression in resident peritoneal macrophages and controls their survival
    • pmid: 25024137
    • E. L. Gautier et al., Gata6 regulates aspartoacylase expression in resident peritoneal macrophages and controls their survival. J. Exp. Med. 211, 1525-1531 (2014). doi: 10.1084/jem.20140570; pmid: 25024137
    • (2014) J. Exp. Med. , vol.211 , pp. 1525-1531
    • Gautier, E.L.1
  • 15
    • 12144285752 scopus 로고    scopus 로고
    • Runx3 regulates mouse TGF-b-mediated dendritic cell function and its absence results in airway inflammation
    • pmid: 14765120
    • O. Fainaru et al., Runx3 regulates mouse TGF-b-mediated dendritic cell function and its absence results in airway inflammation. EMBO J. 23, 969-979 (2004). doi: 10.1038/sj.emboj.7600085; pmid: 14765120
    • (2004) EMBO J. , vol.23 , pp. 969-979
    • Fainaru, O.1
  • 16
    • 84880846105 scopus 로고    scopus 로고
    • The nuclear receptor LXRa controls the functional specialization of splenic macrophages
    • pmid: 23770640
    • N. A-Gonzalez et al., The nuclear receptor LXRa controls the functional specialization of splenic macrophages. Nat. Immunol. 14, 831-839 (2013). doi: 10.1038/ni.2622; pmid: 23770640
    • (2013) Nat. Immunol. , vol.14 , pp. 831-839
    • Gonzalez, N.A.1
  • 17
    • 58249104981 scopus 로고    scopus 로고
    • Role for Spi-C in the development of red pulp macrophages and splenic iron homeostasis
    • pmid: 19037245
    • M. Kohyama et al., Role for Spi-C in the development of red pulp macrophages and splenic iron homeostasis. Nature 457, 318-321 (2009). doi: 10.1038/nature07472; pmid: 19037245
    • (2009) Nature , vol.457 , pp. 318-321
    • Kohyama, M.1
  • 18
    • 84865410948 scopus 로고    scopus 로고
    • Systemic analysis of PPARg in mouse macrophage populations reveals marked diversity in expression with critical roles in resolution of inflammation and airway immunity
    • pmid: 22855714
    • E. L. Gautier et al., Systemic analysis of PPARg in mouse macrophage populations reveals marked diversity in expression with critical roles in resolution of inflammation and airway immunity. J. Immunol. 189, 2614-2624 (2012). doi: 10.4049/jimmunol.1200495; pmid: 22855714
    • (2012) J. Immunol. , vol.189 , pp. 2614-2624
    • Gautier, E.L.1
  • 19
    • 11844259461 scopus 로고    scopus 로고
    • Characterization of purified intraembryonic hematopoietic stem cells as a tool to define their site of origin
    • pmid: 15623562
    • J. Y. Bertrand et al., Characterization of purified intraembryonic hematopoietic stem cells as a tool to define their site of origin. Proc. Natl. Acad. Sci. U.S.A. 102, 134-139 (2005). doi: 10.1073/pnas.0402270102; pmid: 15623562
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 134-139
    • Bertrand, J.Y.1
  • 20
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • pmid: 25516281
    • M. I. Love, W. Huber, S. Anders, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014). doi: 10.1186/s13059-014-0550-8; pmid: 25516281
    • (2014) Genome Biol. , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 21
    • 79551677421 scopus 로고    scopus 로고
    • Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines
    • pmid: 21295703
    • C. Bock et al., Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines. Cell 144, 439-452 (2011). doi: 10.1016/j.cell.2010.12.032; pmid: 21295703
    • (2011) Cell , vol.144 , pp. 439-452
    • Bock, C.1
  • 22
    • 84858007236 scopus 로고    scopus 로고
    • Wnt5a-Ror2 signaling between osteoblastlineage cells and osteoclast precursors enhances osteoclastogenesis
    • pmid: 22344299
    • K. Maeda et al., Wnt5a-Ror2 signaling between osteoblastlineage cells and osteoclast precursors enhances osteoclastogenesis. Nat. Med. 18, 405-412 (2012). doi: 10.1038/nm.2653; pmid: 22344299
    • (2012) Nat. Med. , vol.18 , pp. 405-412
    • Maeda, K.1
  • 23
    • 27644497255 scopus 로고    scopus 로고
    • Three pathways to mature macrophages in the early mouse yolk sac
    • pmid: 16020514
    • J. Y. Bertrand et al., Three pathways to mature macrophages in the early mouse yolk sac. Blood 106, 3004-3011 (2005). doi: 10.1182/blood-2005-02-0461; pmid: 16020514
    • (2005) Blood , vol.106 , pp. 3004-3011
    • Bertrand, J.Y.1
  • 24
    • 84890020963 scopus 로고    scopus 로고
    • 3CR1-dependent renal macrophage survival promotes Candida control and host survival
    • pmid: 24177428
    • 3CR1-dependent renal macrophage survival promotes Candida control and host survival. J. Clin. Invest. 123, 5035-5051 (2013). doi: 10.1172/JCI71307; pmid: 24177428
    • (2013) J. Clin. Invest. , vol.123 , pp. 5035-5051
    • Lionakis, M.S.1
  • 25
    • 84867740805 scopus 로고    scopus 로고
    • Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages
    • pmid: 23023392
    • E. L. Gautier et al., Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages. Nat. Immunol. 13, 1118-1128 (2012). doi: 10.1038/ni.2419; pmid: 23023392
    • (2012) Nat. Immunol. , vol.13 , pp. 1118-1128
    • Gautier, E.L.1
  • 26
    • 84952873491 scopus 로고    scopus 로고
    • LOLA: Enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor
    • pmid: 26508757
    • N. C. Sheffield, C. Bock, LOLA: Enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor. Bioinformatics 32, 587-589 (2016). pmid: 26508757
    • (2016) Bioinformatics , vol.32 , pp. 587-589
    • Sheffield, N.C.1    Bock, C.2
  • 27
    • 84876216563 scopus 로고    scopus 로고
    • Master transcription factors and mediator establish super-enhancers at key cell identity genes
    • pmid: 23582322
    • W. A. Whyte et al., Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell 153, 307-319 (2013). doi: 10.1016/j.cell.2013.03.035; pmid: 23582322
    • (2013) Cell , vol.153 , pp. 307-319
    • Whyte, W.A.1
  • 28
    • 41149104463 scopus 로고    scopus 로고
    • Gene signatures reflect the marked heterogeneity of tissue-resident macrophages
    • pmid: 17998916
    • N. N. Gorgani, Y. Ma, H. F. Clark, Gene signatures reflect the marked heterogeneity of tissue-resident macrophages. Immunol. Cell Biol. 86, 246-254 (2008). doi: 10.1038/sj.icb.7100131; pmid: 17998916
    • (2008) Immunol. Cell Biol. , vol.86 , pp. 246-254
    • Gorgani, N.N.1    Ma, Y.2    Clark, H.F.3
  • 29
    • 73949147392 scopus 로고    scopus 로고
    • Langerhans cell (LC) proliferation mediates neonatal development, homeostasis, and inflammation associated expansion of the epidermal LC network
    • pmid: 19995948
    • L. Chorro et al., Langerhans cell (LC) proliferation mediates neonatal development, homeostasis, and inflammation associated expansion of the epidermal LC network. J. Exp. Med. 206, 3089-3100 (2009). doi: 10.1084/jem.20091586; pmid: 19995948
    • (2009) J. Exp. Med. , vol.206 , pp. 3089-3100
    • Chorro, L.1
  • 30
    • 0038153044 scopus 로고    scopus 로고
    • Specific gene expression of ATP-binding cassette transporters and nuclear hormone receptors in rat liver parenchymal, endothelial, and Kupffer cells
    • pmid: 12704191
    • M. Hoekstra, J. K. Kruijt, M. Van Eck, T. J. Van Berkel, Specific gene expression of ATP-binding cassette transporters and nuclear hormone receptors in rat liver parenchymal, endothelial, and Kupffer cells. J. Biol. Chem. 278, 25448-25453 (2003). doi: 10.1074/jbc.M301189200; pmid: 12704191
    • (2003) J. Biol. Chem. , vol.278 , pp. 25448-25453
    • Hoekstra, M.1    Kruijt, J.K.2    Van Eck, M.3    Van Berkel, T.J.4
  • 31
    • 84908148912 scopus 로고    scopus 로고
    • Induction of the nuclear receptor PPAR-g by the cytokine GM-CSF is critical for the differentiation of fetal monocytes into alveolar macrophages
    • pmid: 25263125
    • C. Schneider et al., Induction of the nuclear receptor PPAR-g by the cytokine GM-CSF is critical for the differentiation of fetal monocytes into alveolar macrophages. Nat. Immunol. 15, 1026-1037 (2014). doi: 10.1038/ni.3005; pmid: 25263125
    • (2014) Nat. Immunol. , vol.15 , pp. 1026-1037
    • Schneider, C.1
  • 32
    • 67449119139 scopus 로고    scopus 로고
    • Langerhans cell maturation and contact hypersensitivity are impaired in aryl hydrocarbon receptor-null mice
    • pmid: 19454665
    • B. Jux, S. Kadow, C. Esser, Langerhans cell maturation and contact hypersensitivity are impaired in aryl hydrocarbon receptor-null mice. J. Immunol. 182, 6709-6717 (2009). doi: 10.4049/jimmunol.0713344; pmid: 19454665
    • (2009) J. Immunol. , vol.182 , pp. 6709-6717
    • Jux, B.1    Kadow, S.2    Esser, C.3
  • 33
    • 0029985185 scopus 로고    scopus 로고
    • Expression patterns of Id1, Id2, and Id3 are highly related but distinct from that of Id4 during mouse embryogenesis
    • pmid: 8922523
    • Y. Jen, K. Manova, R. Benezra, Expression patterns of Id1, Id2, and Id3 are highly related but distinct from that of Id4 during mouse embryogenesis. Dev. Dyn. 207, 235-252 (1996). doi: 10.1002/(SICI)1097-0177(199611)207:3<235::AIDAJA1> 3.0.CO;2-I; pmid: 8922523
    • (1996) Dev. Dyn. , vol.207 , pp. 235-252
    • Jen, Y.1    Manova, K.2    Benezra, R.3
  • 34
    • 0033554723 scopus 로고    scopus 로고
    • Id1 and Id3 are required for neurogenesis, angiogenesis and vascularization of tumour xenografts
    • pmid: 10537105
    • D. Lyden et al., Id1 and Id3 are required for neurogenesis, angiogenesis and vascularization of tumour xenografts. Nature 401, 670-677 (1999). doi: 10.1038/44334; pmid: 10537105
    • (1999) Nature , vol.401 , pp. 670-677
    • Lyden, D.1
  • 35
    • 79960411324 scopus 로고    scopus 로고
    • CCL2 recruits inflammatory monocytes to facilitate breast-tumour metastasis
    • pmid: 21654748
    • B. Z. Qian et al., CCL2 recruits inflammatory monocytes to facilitate breast-tumour metastasis. Nature 475, 222-225 (2011). doi: 10.1038/nature10138; pmid: 21654748
    • (2011) Nature , vol.475 , pp. 222-225
    • Qian, B.Z.1
  • 36
    • 78649447206 scopus 로고    scopus 로고
    • Developmental ablation of Id1 and Id3 genes in the vasculature leads to postnatal cardiac phenotypes
    • pmid: 20937270
    • Q. Zhao et al., Developmental ablation of Id1 and Id3 genes in the vasculature leads to postnatal cardiac phenotypes. Dev. Biol. 349, 53-64 (2011). doi: 10.1016/j.ydbio.2010.10.004; pmid: 20937270
    • (2011) Dev. Biol. , vol.349 , pp. 53-64
    • Zhao, Q.1
  • 37
    • 78751701447 scopus 로고    scopus 로고
    • Modeling Sjögren's syndrome with Id3 conditional knockout mice
    • pmid: 20932862
    • Z. Guo et al., Modeling Sjögren's syndrome with Id3 conditional knockout mice. Immunol. Lett. 135, 34-42 (2011). doi: 10.1016/j.imlet.2010.09.009; pmid: 20932862
    • (2011) Immunol. Lett. , vol.135 , pp. 34-42
    • Guo, Z.1
  • 38
    • 76149117809 scopus 로고    scopus 로고
    • A novel mouse model of inflammatory bowel disease links mammalian target of rapamycin-dependent hyperproliferation of colonic epithelium to inflammation associated tumorigenesis
    • pmid: 20042677
    • L. Deng et al., A novel mouse model of inflammatory bowel disease links mammalian target of rapamycin-dependent hyperproliferation of colonic epithelium to inflammation associated tumorigenesis. Am. J. Pathol. 176, 952-967 (2010). doi: 10.2353/ajpath.2010.090622; pmid: 20042677
    • (2010) Am. J. Pathol. , vol.176 , pp. 952-967
    • Deng, L.1
  • 39
    • 84918528285 scopus 로고    scopus 로고
    • Neutrophils scan for activated platelets to initiate inflammation
    • pmid: 25477463
    • V. Sreeramkumar et al., Neutrophils scan for activated platelets to initiate inflammation. Science 346, 1234-1238 (2014). doi: 10.1126/science.1256478; pmid: 25477463
    • (2014) Science , vol.346 , pp. 1234-1238
    • Sreeramkumar, V.1
  • 40
    • 84871809302 scopus 로고    scopus 로고
    • STAR: Ultrafast universal RNA-seq aligner
    • pmid: 23104886
    • A. Dobin et al., STAR: Ultrafast universal RNA-seq aligner. Bioinformatics 29, 15-21 (2013). doi: 10.1093/bioinformatics/bts635; pmid: 23104886
    • (2013) Bioinformatics , vol.29 , pp. 15-21
    • Dobin, A.1
  • 41
    • 84888861753 scopus 로고    scopus 로고
    • Systematic evaluation of spliced alignment programs for RNA-seq data
    • pmid: 24185836
    • P. G. Engström et al., Systematic evaluation of spliced alignment programs for RNA-seq data. Nat. Methods 10, 1185-1191 (2013). doi: 10.1038/nmeth.2722; pmid: 24185836
    • (2013) Nat. Methods , vol.10 , pp. 1185-1191
    • Engström, P.G.1
  • 42
    • 84957432156 scopus 로고    scopus 로고
    • Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types
    • pmid: 26691212
    • J. Li et al., Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types. EMBO Rep. 17, 178-187 (2016). pmid: 26691212
    • (2016) EMBO Rep. , vol.17 , pp. 178-187
    • Li, J.1
  • 43
    • 84891677425 scopus 로고    scopus 로고
    • Full-length RNA-seq from single cells using Smart-seq2
    • pmid: 24385147
    • S. Picelli et al., Full-length RNA-seq from single cells using Smart-seq2. Nat. Protoc. 9, 171-181 (2014). doi: 10.1038/nprot.2014.006; pmid: 24385147
    • (2014) Nat. Protoc. , vol.9 , pp. 171-181
    • Picelli, S.1
  • 44
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • pmid: 19261174
    • B. Langmead, C. Trapnell, M. Pop, S. L. Salzberg, Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009). doi: 10.1186/gb-2009-10-3-r25; pmid: 19261174
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 45
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • pmid: 23618408
    • D. Kim et al., TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36 (2013). doi: 10.1186/gb-2013-14-4-r36; pmid: 23618408
    • (2013) Genome Biol. , vol.14 , pp. R36
    • Kim, D.1
  • 46
    • 84863992953 scopus 로고    scopus 로고
    • Identifying differentially expressed transcripts from RNA-seq data with biological variation
    • pmid: 22563066
    • P. Glaus, A. Honkela, M. Rattray, Identifying differentially expressed transcripts from RNA-seq data with biological variation. Bioinformatics 28, 1721-1728 (2012). doi: 10.1093/bioinformatics/bts260; pmid: 22563066
    • (2012) Bioinformatics , vol.28 , pp. 1721-1728
    • Glaus, P.1    Honkela, A.2    Rattray, M.3
  • 47
    • 33845432928 scopus 로고    scopus 로고
    • Adjusting batch effects in microarray expression data using empirical Bayes methods
    • pmid: 16632515
    • W. E. Johnson, C. Li, A. Rabinovic, Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics 8, 118-127 (2007). doi: 10.1093/biostatistics/kxj037; pmid: 16632515
    • (2007) Biostatistics , vol.8 , pp. 118-127
    • Johnson, W.E.1    Li, C.2    Rabinovic, A.3
  • 48
    • 84946060265 scopus 로고    scopus 로고
    • CODEX: A next-generation sequencing experiment database for the haematopoietic and embryonic stem cell communities
    • pmid: 25270877
    • M. Sánchez-Castillo et al., CODEX: A next-generation sequencing experiment database for the haematopoietic and embryonic stem cell communities. Nucleic Acids Res. 43, D1117-D1123 (2015). doi: 10.1093/nar/gku895; pmid: 25270877
    • (2015) Nucleic Acids Res. , vol.43 , pp. D1117-D1123
    • Sánchez-Castillo, M.1
  • 49
    • 79959923522 scopus 로고    scopus 로고
    • G:Profiler-A web server for functional interpretation of gene lists (2011 update)
    • pmid: 21646343
    • J. Reimand, T. Arak, J. Vilo, g:Profiler-A web server for functional interpretation of gene lists (2011 update). Nucleic Acids Res. 39 (suppl. 2), W307-W315 (2011). doi: 10.1093/nar/gkr378; pmid: 21646343
    • (2011) Nucleic Acids Res. , vol.39 , pp. W307-W315
    • Reimand, J.1    Arak, T.2    Vilo, J.3
  • 50
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    • pmid: 16199517
    • A. Subramanian et al., Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. U.S.A. 102, 15545-15550 (2005). doi: 10.1073/pnas.0506580102; pmid: 16199517
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 15545-15550
    • Subramanian, A.1
  • 51
    • 84893905629 scopus 로고    scopus 로고
    • Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types
    • pmid: 24531970
    • D. A. Jaitin et al., Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types. Science 343, 776-779 (2014).pmid: 24531970
    • (2014) Science , vol.343 , pp. 776-779
    • Jaitin, D.A.1
  • 52
    • 84929151009 scopus 로고    scopus 로고
    • Spatial reconstruction of single-cell gene expression data
    • pmid: 25867923
    • R. Satija, J. A. Farrell, D. Gennert, A. F. Schier, A. Regev, Spatial reconstruction of single-cell gene expression data. Nat. Biotechnol. 33, 495-502 (2015). doi: 10.1038/nbt.3192; pmid: 25867923
    • (2015) Nat. Biotechnol. , vol.33 , pp. 495-502
    • Satija, R.1    Farrell, J.A.2    Gennert, D.3    Schier, A.F.4    Regev, A.5
  • 53
    • 84900873950 scopus 로고    scopus 로고
    • The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
    • pmid: 24658644
    • C. Trapnell et al., The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nat. Biotechnol. 32, 381-386 (2014). doi: 10.1038/nbt.2859; pmid: 24658644
    • (2014) Nat. Biotechnol. , vol.32 , pp. 381-386
    • Trapnell, C.1
  • 54
    • 84908546013 scopus 로고    scopus 로고
    • NbClust: An R package for determining the relevant number of clusters in a data set
    • M. Charrad, N. Ghazzali, V. Boiteau, A. Niknafs, NbClust: An R package for determining the relevant number of clusters in a data set. J. Stat. Softw. 61, 1-36 (2014). doi: 10.18637/jss.v061.i06
    • (2014) J. Stat. Softw. , vol.61 , pp. 1-36
    • Charrad, M.1    Ghazzali, N.2    Boiteau, V.3    Niknafs, A.4
  • 55
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Y. Benjamini, Y. Hochberg, Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57, 289-300 (1995).
    • (1995) J. R. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.