메뉴 건너뛰기




Volumn 5, Issue JUN, 2014, Pages

Metagenomic search strategies for interactions among plants and multiple microbes

Author keywords

BLAST; Databases; E probes; EDNA; Microbial consortia; Taxonomic classification

Indexed keywords


EID: 84979609028     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2014.00268     Document Type: Review
Times cited : (21)

References (50)
  • 1
    • 64849095739 scopus 로고    scopus 로고
    • Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus
    • Al Rwahnih, M., Daubert, S., Golino, D., and Rowhani, A. (2009). Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus. Virology 387, 395-401. doi: 10.1016/j.virol.2009.02.028
    • (2009) Virology , vol.387 , pp. 395-401
    • Al Rwahnih, M.1    Daubert, S.2    Golino, D.3    Rowhani, A.4
  • 2
    • 84883468661 scopus 로고    scopus 로고
    • Scalable metagenomic taxonomy classification using a reference genome database
    • Ames, S. K., Hysom, D. A., Gardner, S. N., Lloyd, G. S., Gokhale, M. B., and Allen, J. E. (2013). Scalable metagenomic taxonomy classification using a reference genome database. Bioinformatics 29, 2253-2260. doi: 10.1093/bioinformatics/btt389
    • (2013) Bioinformatics , vol.29 , pp. 2253-2260
    • Ames, S.K.1    Hysom, D.A.2    Gardner, S.N.3    Lloyd, G.S.4    Gokhale, M.B.5    Allen, J.E.6
  • 3
    • 0030967077 scopus 로고    scopus 로고
    • Signaling in plant-microbe interactions
    • Baker, B., Zambryski, P., Staskawicz, B., and Dinesh-Kumar, S. P. (1997). Signaling in plant-microbe interactions. Science 276, 726-733. doi: 10.1126/science.276.5313.726
    • (1997) Science , vol.276 , pp. 726-733
    • Baker, B.1    Zambryski, P.2    Staskawicz, B.3    Dinesh-Kumar, S.P.4
  • 4
    • 84878581878 scopus 로고    scopus 로고
    • Pathology and viral metagenomics, a recent history
    • Bernardo, P., Albina, E., Eloit, M., and Roumagnac, P. (2013). Pathology and viral metagenomics, a recent history. Med. Sci. (Paris) 29, 501-508. doi: 10.1051/medsci/2013295013
    • (2013) Med. Sci. (Paris) , vol.29 , pp. 501-508
    • Bernardo, P.1    Albina, E.2    Eloit, M.3    Roumagnac, P.4
  • 5
    • 79955611184 scopus 로고    scopus 로고
    • PhymmBL expanded: Confidence scores, custom databases, parallelization and more
    • Brady, A., and Salzberg, S. (2011). PhymmBL expanded: confidence scores, custom databases, parallelization and more. Nat. Methods 8, 367. doi: 10.1038/nmeth0511-367
    • (2011) Nat. Methods , vol.8 , pp. 367
    • Brady, A.1    Salzberg, S.2
  • 6
    • 84882567511 scopus 로고    scopus 로고
    • Gut microbiota and obesity: Lessons from the microbiome
    • Cani, P. D. (2013). Gut microbiota and obesity: lessons from the microbiome. Brief. Funct. Genomics 12, 381-387. doi: 10.1093/bfgp/elt014
    • (2013) Brief. Funct. Genomics , vol.12 , pp. 381-387
    • Cani, P.D.1
  • 7
    • 84886245555 scopus 로고    scopus 로고
    • Interactive effects of global climate change and pollution on marine microbes: The way ahead
    • Coelho, F., Santos, A. L., Coimbra, J., Almeida, A., Cunha, A., Cleary, D. F. R., et al. (2013). Interactive effects of global climate change and pollution on marine microbes: the way ahead. Ecol. Evol. 3, 1808-1818. doi: 10.1002/ece3.565
    • (2013) Ecol. Evol , vol.3 , pp. 1808-1818
    • Coelho, F.1    Santos, A.L.2    Coimbra, J.3    Almeida, A.4    Cunha, A.5    Cleary, D.F.R.6
  • 8
    • 84884748212 scopus 로고    scopus 로고
    • Sequencing the human microbiome in health and disease
    • Cox, M. J., Cookson, W., and Moffatt, M. F. (2013). Sequencing the human microbiome in health and disease. Hum. Mol. Genet. 22, R88-R94. doi: 10.1093/hmg/ddt398
    • (2013) Hum. Mol. Genet , vol.22 , pp. R88-R94
    • Cox, M.J.1    Cookson, W.2    Moffatt, M.F.3
  • 9
    • 84871718165 scopus 로고    scopus 로고
    • Community terminal restriction fragment length polymorphisms reveal insights into the diversity and dynamics of leaf endophytic bacteria
    • Ding, T., Palmer, M., and Melcher, U. (2013). Community terminal restriction fragment length polymorphisms reveal insights into the diversity and dynamics of leaf endophytic bacteria. BMC Microbiol. 13:1. doi: 10.1186/1471-2180-13-1
    • (2013) BMC Microbiol , vol.13 , pp. 1
    • Ding, T.1    Palmer, M.2    Melcher, U.3
  • 10
    • 69849103740 scopus 로고    scopus 로고
    • Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes
    • Donaire, L., Wang, Y., Gonzalez-Ibeas, D., Mayer, K. F., Aranda, M. A., and Llave, C. (2009). Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes. Virology 392, 203-214. doi: 10.1016/j.virol.2009.07.005
    • (2009) Virology , vol.392 , pp. 203-214
    • Donaire, L.1    Wang, Y.2    Gonzalez-Ibeas, D.3    Mayer, K.F.4    Aranda, M.A.5    Llave, C.6
  • 11
    • 84870035320 scopus 로고    scopus 로고
    • Taxonomic binning of metagenome samples generated by next-generation sequencing technologies
    • Dröge, J., and McHardy, A. C. (2012). Taxonomic binning of metagenome samples generated by next-generation sequencing technologies. Brief. Bioinform. 13, 646-655. doi: 10.1093/bib/bbs031
    • (2012) Brief. Bioinform , vol.13 , pp. 646-655
    • Dröge, J.1    McHardy, A.C.2
  • 12
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar, R. C. (2010). Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461. doi: 10.1093/bioinformatics/btq461
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 13
    • 84882915942 scopus 로고    scopus 로고
    • Forensic plant pathology
    • 2nd Edn, eds B. Budowle, S. E. Schutzer, R. G. Breeze, P. S. Keim, and S. A. Morse (Amsterdam: Elsevier
    • Fletcher, J., Barnaby, N. G., Burans, J. P., Melcher, U., Nutter, F. W. Jr., Thomas, C., et al. (2010a). “Forensic plant pathology,” in Microbial Forensics, 2nd Edn, eds B. Budowle, S. E. Schutzer, R. G. Breeze, P. S. Keim, and S. A. Morse (Amsterdam: Elsevier), 89-105.
    • (2010) Microbial Forensics , pp. 89-105
    • Fletcher, J.1    Barnaby, N.G.2    Burans, J.P.3    Melcher, U.4    Nutter, F.W.5    Thomas, C.6
  • 15
    • 84890045913 scopus 로고    scopus 로고
    • The thousand-year graveyard
    • Gibbons, A. (2013). The thousand-year graveyard. Science 342, 1306-1310. doi: 10.1126/science.342.6164.1306
    • (2013) Science , vol.342 , pp. 1306-1310
    • Gibbons, A.1
  • 16
  • 17
    • 84891349082 scopus 로고    scopus 로고
    • A poor man’s BLASTX-high-throughput metagenomic protein database search using PAUDA
    • Huson, D. H., and Xie, C. (2014). A poor man’s BLASTX-high-throughput metagenomic protein database search using PAUDA. Bioinformatics 30, 38-39. doi: 10.1093/bioinformatics/btt254
    • (2014) Bioinformatics , vol.30 , pp. 38-39
    • Huson, D.H.1    Xie, C.2
  • 18
    • 84866060234 scopus 로고    scopus 로고
    • Detection of viruses in sweetpotato from Honduras and Guatemala augmented by deep-sequencing of small-RNAs
    • Kashif, M., Pietila, S., Artola, K., Jones, R. A. C., Tugume, A. K., Makinen, V., et al. (2012). Detection of viruses in sweetpotato from Honduras and Guatemala augmented by deep-sequencing of small-RNAs. Plant Dis. 96, 1430-1437. doi: 10.1094/pdis-03-12-0268-re
    • (2012) Plant Dis , vol.96 , pp. 1430-1437
    • Kashif, M.1    Pietila, S.2    Artola, K.3    Jones, R.A.C.4    Tugume, A.K.5    Makinen, V.6
  • 19
    • 4243876623 scopus 로고    scopus 로고
    • Ralstonia solanacearum Biovar 2, Race 3 in geraniums imported from Guatemala to Pennsylvania in 1999
    • Kim, S. H., Olson, R. N., and Schaad, N. (2002). Ralstonia solanacearum Biovar 2, Race 3 in geraniums imported from Guatemala to Pennsylvania in 1999. Plant Dis. 92, S42.
    • (2002) Plant Dis , vol.92 , pp. S42
    • Kim, S.H.1    Olson, R.N.2    Schaad, N.3
  • 21
    • 67349170750 scopus 로고    scopus 로고
    • Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses
    • Kreuze, J. F., Perez, A., Untiveros, M., Quispe, D., Fuentes, S., Barker, I., et al. (2009). Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses. Virology 388, 1-7. doi: 10.1016/j.virol.2009.03.024
    • (2009) Virology , vol.388 , pp. 1-7
    • Kreuze, J.F.1    Perez, A.2    Untiveros, M.3    Quispe, D.4    Fuentes, S.5    Barker, I.6
  • 22
    • 84862106478 scopus 로고    scopus 로고
    • Deep sequencing of small RNAs in tomato for virus and viroid identification and srain differentiation
    • Li, R. G., Gao, S., Hernandez, A. G., Wechter, W. P., Fei, Z. J., and Ling, K. S. (2012). Deep sequencing of small RNAs in tomato for virus and viroid identification and srain differentiation. PLoS ONE 7:e37127. doi: 10.1371/journal.pone.0037127
    • (2012) Plos ONE , vol.7
    • Li, R.G.1    Gao, S.2    Hernandez, A.G.3    Wechter, W.P.4    Fei, Z.J.5    Ling, K.S.6
  • 23
    • 79960713932 scopus 로고    scopus 로고
    • Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
    • Liu, B., Gibbons, T., Ghodsi, M., Treangen, T., and Pop, M. (2011). Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences. BMC Genomics 12:S4. doi: 10.1186/1471-2164-12-s2-s4
    • (2011) BMC Genomics , vol.12 , pp. S4
    • Liu, B.1    Gibbons, T.2    Ghodsi, M.3    Treangen, T.4    Pop, M.5
  • 24
    • 84871741290 scopus 로고    scopus 로고
    • Identification and characterization of Citrus yellow vein clearing virus, a putative new member of the genus Mandarivirus
    • Loconsole, G., Onelge, N., Potere, O., Giampetruzzi, A., Bozan, O., Satar, S., et al. (2012). Identification and characterization of Citrus yellow vein clearing virus, a putative new member of the genus Mandarivirus. Phytopathology 102, 1168-1175. doi: 10.1094/phyto-06-12-0140-r
    • (2012) Phytopathology , vol.102 , pp. 1168-1175
    • Loconsole, G.1    Onelge, N.2    Potere, O.3    Giampetruzzi, A.4    Bozan, O.5    Satar, S.6
  • 25
    • 84886594272 scopus 로고    scopus 로고
    • Shifts in diversity and community structure of endophytic bacteria and archaea across root, stem and leaf tissues in the common reed, Phragmites australis, along a salinity gradient in a marine tidal wetland of northern China
    • Ma, B., Lv, X. F., Warren, A., and Gong, J. (2013). Shifts in diversity and community structure of endophytic bacteria and archaea across root, stem and leaf tissues in the common reed, Phragmites australis, along a salinity gradient in a marine tidal wetland of northern China. Antonie Van Leeuwenhoek 104, 759-768. doi: 10.1007/s10482-013-9984-3
    • (2013) Antonie Van Leeuwenhoek , vol.104 , pp. 759-768
    • Ma, B.1    Lv, X.F.2    Warren, A.3    Gong, J.4
  • 26
    • 84883435679 scopus 로고    scopus 로고
    • Biosecurity implications of new technology and discovery in plant virus research
    • Macdiarmid, R., Rodoni, B., Melcher, U., Ochoa-Corona, F., and Roossinck, M. (2013). Biosecurity implications of new technology and discovery in plant virus research. PLoS Pathog. 9:e1003337. doi: 10.1371/journal.ppat.1003337
    • (2013) Plos Pathog , vol.9
    • Macdiarmid, R.1    Rodoni, B.2    Melcher, U.3    Ochoa-Corona, F.4    Roossinck, M.5
  • 27
    • 84862189439 scopus 로고    scopus 로고
    • Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities
    • Martin, J., Sykes, S., Young, S., Kota, K., Sanka, R., Sheth, N., et al. (2012). Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities. PLoS ONE 7:e36427. doi: 10.1371/journal.pone.0036427
    • (2012) Plos ONE , vol.7
    • Martin, J.1    Sykes, S.2    Young, S.3    Kota, K.4    Sanka, R.5    Sheth, N.6
  • 28
    • 48149113427 scopus 로고    scopus 로고
    • Evidence for novel viruses by analysis of nucleic acids in virus-like particle fractions from Ambrosia psilostachya
    • Melcher, U., Muthukumar, V., Wiley, G. B., Min, B. E., Palmer, M. W., Verchot-Lubicz, J., et al. (2008). Evidence for novel viruses by analysis of nucleic acids in virus-like particle fractions from Ambrosia psilostachya. J. Virol. Methods 152, 49-55. doi: 10.1016/j.jviromet.2008.05.030
    • (2008) J. Virol. Methods , vol.152 , pp. 49-55
    • Melcher, U.1    Muthukumar, V.2    Wiley, G.B.3    Min, B.E.4    Palmer, M.W.5    Verchot-Lubicz, J.6
  • 29
    • 84881233841 scopus 로고    scopus 로고
    • The rhizosphere microbiome: Significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms
    • Mendes, R., Garbeva, P., and Raaijmakers, J. M. (2013). The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms. FEMS Microbiol. Rev. 37, 634-663. doi: 10.1111/1574-6976.12028
    • (2013) FEMS Microbiol. Rev , vol.37 , pp. 634-663
    • Mendes, R.1    Garbeva, P.2    Raaijmakers, J.M.3
  • 30
    • 84863716267 scopus 로고    scopus 로고
    • The road to RNA silencing is paved with plant-virus interactions
    • Palukaitis, P. (2011). The road to RNA silencing is paved with plant-virus interactions. Plant Pathol. J. 27, 197-206. doi: 10.5423/ppj.2011.27.3.197
    • (2011) Plant Pathol. J. , vol.27 , pp. 197-206
    • Palukaitis, P.1
  • 31
    • 78049263889 scopus 로고    scopus 로고
    • Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine
    • Pantaleo, V., Saldarelli, P., Miozzi, L., Giampetruzzi, A., Gisel, A., Moxon, S., et al. (2010). Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine. Virology 408, 49-56. doi: 10.1016/j.virol.2010.09.001
    • (2010) Virology , vol.408 , pp. 49-56
    • Pantaleo, V.1    Saldarelli, P.2    Miozzi, L.3    Giampetruzzi, A.4    Gisel, A.5    Moxon, S.6
  • 33
    • 84901008455 scopus 로고    scopus 로고
    • Regulation of primary plant metabolism during plant-pathogen interactions and its contribution to plant defense
    • Rojas, C. M., Senthil-Kumar, M., Tzin, V., and Mysore, K. S. (2014). Regulation of primary plant metabolism during plant-pathogen interactions and its contribution to plant defense. Front. Plant Sci. 5:17. doi: 10.3389/fpls.2014.00017
    • (2014) Front. Plant Sci , vol.5 , pp. 17
    • Rojas, C.M.1    Senthil-Kumar, M.2    Tzin, V.3    Mysore, K.S.4
  • 34
    • 84877911402 scopus 로고    scopus 로고
    • A novel virus of the genus Cilevirus causing symptoms similar to citrus leprosis
    • Roy, A., Choudhary, N., Guillermo, L. M., Shao, J., Govindarajulu, A., Achor, D., et al. (2013a). A novel virus of the genus Cilevirus causing symptoms similar to citrus leprosis. Phytopathology 103, 488-500. doi: 10.1094/phyto-07-12-0177-r
    • (2013) Phytopathology , vol.103 , pp. 488-500
    • Roy, A.1    Choudhary, N.2    Guillermo, L.M.3    Shao, J.4    Govindarajulu, A.5    Achor, D.6
  • 35
    • 84920939066 scopus 로고    scopus 로고
    • A case study on discovery of novel Citrus leprosis virus cytoplasmic type 2 utilizing small RNA libraries by next generation sequencing and bioinformatic analyses
    • Roy, A., Shao, J., Hartung, J. S., Schneider, W. L., and Brlansky, R. H. (2013b). A case study on discovery of novel Citrus leprosis virus cytoplasmic type 2 utilizing small RNA libraries by next generation sequencing and bioinformatic analyses. J. Data Mining Genomics Proteomics 4, 1-6. doi: 10.4172/2153-0602.1000129
    • (2013) J. Data Mining Genomics Proteomics , vol.4 , pp. 1-6
    • Roy, A.1    Shao, J.2    Hartung, J.S.3    Schneider, W.L.4    Brlansky, R.H.5
  • 36
    • 84889576510 scopus 로고    scopus 로고
    • Developments and insights into the analysis of the human microbiome
    • Rucker, O., Dangel, A., and Klein, H. G. (2013). Developments and insights into the analysis of the human microbiome. J. Lab. Med. 37, 329-335. doi: 10.1515/labmed-2013-0018
    • (2013) J. Lab. Med , vol.37 , pp. 329-335
    • Rucker, O.1    Dangel, A.2    Klein, H.G.3
  • 37
    • 84864014959 scopus 로고    scopus 로고
    • Mechanisms of biocontrol and plant growth-promoting activity in soil bacterial species of Bacillus and Pseudomonas: A review
    • Santoyo, G., Orozco-Mosqueda, M. D., and Govindappa, M. (2012). Mechanisms of biocontrol and plant growth-promoting activity in soil bacterial species of Bacillus and Pseudomonas: a review. Biocontrol Sci. Technol. 22, 855-872. doi: 10.1080/09583157.2012.694413
    • (2012) Biocontrol Sci. Technol , vol.22 , pp. 855-872
    • Santoyo, G.1    Orozco-Mosqueda, M.D.2    Govindappa, M.3
  • 38
    • 77951942340 scopus 로고    scopus 로고
    • Treephyler: Fast taxonomic profiling of metagenomes
    • Schreiber, F., Gumrich, P., Daniel, R., and Meinicke, P. (2010). Treephyler: fast taxonomic profiling of metagenomes. Bioinformatics 26, 960-961. doi: 10.1093/bioinformatics/btq070
    • (2010) Bioinformatics , vol.26 , pp. 960-961
    • Schreiber, F.1    Gumrich, P.2    Daniel, R.3    Meinicke, P.4
  • 39
    • 84864440400 scopus 로고    scopus 로고
    • Metagenomic microbial community profiling using unique clade-specific marker genes
    • Segata, N., Waldron, L., Ballarini, A., Narasimhan, V., Jousson, O., and Huttenhower, C. (2012). Metagenomic microbial community profiling using unique clade-specific marker genes. Nat. Methods 9:811-814. doi: 10.1038/nmeth.2066
    • (2012) Nat. Methods , vol.9 , pp. 811-814
    • Segata, N.1    Waldron, L.2    Ballarini, A.3    Narasimhan, V.4    Jousson, O.5    Huttenhower, C.6
  • 40
    • 84979605613 scopus 로고    scopus 로고
    • Microbial forensics and Ag biosecuirty: A national priority
    • Smith, J. (2007). Microbial forensics and Ag biosecuirty: a national priority. Vanguard 2007, 10-13.
    • (2007) Vanguard , vol.2007 , pp. 10-13
    • Smith, J.1
  • 41
    • 84893841330 scopus 로고    scopus 로고
    • A complete ancient RNA genome: Identification, reconstruction and evolutionary history of archaeological Barley Stripe Mosaic Virus
    • Smith, O., Clapham, A., Rose, P., Liu, Y., Wang, J., and Allaby, R. G. (2014). A complete ancient RNA genome: identification, reconstruction and evolutionary history of archaeological Barley Stripe Mosaic Virus. Sci. Rep. 4, 4003. doi: 10.1038/srep04003
    • (2014) Sci. Rep , vol.4 , pp. 4003
    • Smith, O.1    Clapham, A.2    Rose, P.3    Liu, Y.4    Wang, J.5    Allaby, R.G.6
  • 43
    • 84882798441 scopus 로고    scopus 로고
    • E-probe Diagnostic Nucleic acid Analysis (EDNA): A theoretical approach for handling of next generation sequencing data for diagnostics
    • Stobbe, A. H., Daniels, J., Espindola, A., Verma, R., Melcher, U., Ochoa-Corona, F., et al. (2013). E-probe Diagnostic Nucleic acid Analysis (EDNA): a theoretical approach for handling of next generation sequencing data for diagnostics. J. Microbiol. Methods 94, 356-366. doi: 10.1016/j.mimet.2013.07.002
    • (2013) J. Microbiol. Methods , vol.94 , pp. 356-366
    • Stobbe, A.H.1    Daniels, J.2    Espindola, A.3    Verma, R.4    Melcher, U.5    Ochoa-Corona, F.6
  • 44
    • 84907211268 scopus 로고    scopus 로고
    • Screening metagenomic data for viruses using the e-probe diagnostic nucleic acid assay (EDNA)
    • press
    • Stobbe, A. H., Schneider, W. L., Hoyt, P. R., and Melcher, U. (2014). Screening metagenomic data for viruses using the e-probe diagnostic nucleic acid assay (EDNA). Phytopathology (in press).
    • (2014) Phytopathology
    • Stobbe, A.H.1    Schneider, W.L.2    Hoyt, P.R.3    Melcher, U.4
  • 45
    • 84869998312 scopus 로고    scopus 로고
    • Current opportunities and challenges in microbial metagenome analysis-a bioinformatic perspective
    • Teeling, H., and Glockner, F. O. (2012). Current opportunities and challenges in microbial metagenome analysis-a bioinformatic perspective. Brief. Bioinform. 13, 728-742. doi: 10.1093/bib/bbs039
    • (2012) Brief. Bioinform , vol.13 , pp. 728-742
    • Teeling, H.1    Glockner, F.O.2
  • 47
    • 84890954513 scopus 로고    scopus 로고
    • Viruses associated with rusty mottle and twisted leaf diseases of sweet cherry are distinct species
    • Villamor, D. E. V., and Eastwell, K. C. (2013). Viruses associated with rusty mottle and twisted leaf diseases of sweet cherry are distinct species. Phytopathology 103, 1287-1295. doi: 10.1094/phyto-05-13-0140-r
    • (2013) Phytopathology , vol.103 , pp. 1287-1295
    • Villamor, D.E.V.1    Eastwell, K.C.2
  • 49
    • 84899090573 scopus 로고    scopus 로고
    • Kraken: Ultrafast metagenomic sequence classification using exact alignments
    • Wood, D. E., and Salzberg, S. L. (2014). Kraken: ultrafast metagenomic sequence classification using exact alignments. Genome Biol. 15, R46. doi: 10.1186/gb-2014-15-3-r46
    • (2014) Genome Biol , vol.15 , pp. R46
    • Wood, D.E.1    Salzberg, S.L.2
  • 50
    • 84855167751 scopus 로고    scopus 로고
    • RAPSearch2: A fast and memory-efficient protein similarity search tool for next generation sequencing data
    • Zhao, Y., Tang, H., and Ye, Y. (2012). RAPSearch2: a fast and memory-efficient protein similarity search tool for next generation sequencing data. Bioinformatics 28, 125-126. doi: 10.1093/bioinformatics/btr595
    • (2012) Bioinformatics , vol.28 , pp. 125-126
    • Zhao, Y.1    Tang, H.2    Ye, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.