메뉴 건너뛰기




Volumn 13, Issue 1, 2013, Pages

Community terminal restriction fragment length polymorphisms reveal insights into the diversity and dynamics of leaf endophytic bacteria

Author keywords

Biodiversity; Ecology; Leaf bacterial endophytes; T RFLP

Indexed keywords

DNA 16S;

EID: 84871718165     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-13-1     Document Type: Article
Times cited : (71)

References (39)
  • 1
    • 1642399010 scopus 로고    scopus 로고
    • Analysis of the endophytic actinobacterial population in the roots of wheat (Triticum aestivum L.) by terminal restriction fragment length polymorphism and sequencing of 16S rRNA clones
    • Analysis of the endophytic actinobacterial population in the roots of wheat (Triticum aestivum L.) by terminal restriction fragment length polymorphism and sequencing of 16S rRNA clones. Conn VM, Franco CMM, Appl Environ Microbiol 2004 70 3 1784 1794
    • (2004) Appl Environ Microbiol , vol.70 , Issue.3 , pp. 1784-1794
    • Conn, V.M.1    Franco, C.M.M.2
  • 2
    • 0030613398 scopus 로고    scopus 로고
    • Biodiversity of endophytic bacteria which colonize red clover nodules, roots, stems and foliage and their influence on host growth
    • DOI 10.1007/s003740050273
    • Biodiversity of endophytic bacteria which colonize red clover nodules, roots, stems and foliage and their influence on host growth. Sturz AV, Christie BR, Matheson BG, Nowak J, Biol Fertility Soils 1997 25 13 19 10.1007/s003740050273 (Pubitemid 27266335)
    • (1997) Biology and Fertility of Soils , vol.25 , Issue.1 , pp. 13-19
    • Sturz, A.V.1    Christie, B.R.2    Matheson, B.G.3    Nowak, J.4
  • 3
    • 33646538443 scopus 로고    scopus 로고
    • Soil parent material is a key determinant of the bacterial community structure in arable soils
    • DOI 10.1111/j.1574-6941.2006.00085.x
    • Soil parent material is a key determinant of the bacterial community structure in arable soils. Ulrich A, Becker R, FEMS Microbiol Ecol 2006 56 430 443 10.1111/j.1574-6941.2006.00085.x 16689875 (Pubitemid 43725598)
    • (2006) FEMS Microbiology Ecology , vol.56 , Issue.3 , pp. 430-443
    • Ulrich, A.1    Becker, R.2
  • 4
    • 0000725716 scopus 로고
    • Lognormal distribution of epiphytic bacterial populations on leaf surfaces
    • 16346097
    • Lognormal distribution of epiphytic bacterial populations on leaf surfaces. Hirano SS, Nordheim EV, Arny DC, Upper CD, Appl Environ Microbiol 1982 44 3 695 700 16346097
    • (1982) Appl Environ Microbiol , vol.44 , Issue.3 , pp. 695-700
    • Hirano, S.S.1    Nordheim, E.V.2    Arny, D.C.3    Upper, C.D.4
  • 5
    • 79953739448 scopus 로고    scopus 로고
    • Changes in spinach phylloepiphytic bacteria communities following minimal processing and refrigerated storage described using pyrosequencing of 16S rRNA amplicons
    • 10.1111/j.1365-2672.2011.04969.x 21371219
    • Changes in spinach phylloepiphytic bacteria communities following minimal processing and refrigerated storage described using pyrosequencing of 16S rRNA amplicons. Lopez-Velasco G, Welbaum GE, Boyer RR, Mane SP, Ponder MA, J Appl Microbiol 2011 110 5 1203 1214 10.1111/j.1365-2672.2011.04969.x 21371219
    • (2011) J Appl Microbiol , vol.110 , Issue.5 , pp. 1203-1214
    • Lopez-Velasco, G.1    Welbaum, G.E.2    Boyer, R.R.3    Mane, S.P.4    Ponder, M.A.5
  • 6
    • 77949282823 scopus 로고    scopus 로고
    • Maize leaf epiphytic bacteria diversity patterns are genetically correlated with resistance to fungal pathogen infection
    • 10.1094/MPMI-23-4-0473 20192834
    • Maize leaf epiphytic bacteria diversity patterns are genetically correlated with resistance to fungal pathogen infection. Balint-Kurti P, Simmons SJ, Blum JE, Ballare CL, Stapleton AE, Mol Plant Microbe Interact 2010 23 4 473 484 10.1094/MPMI-23-4-0473 20192834
    • (2010) Mol Plant Microbe Interact , vol.23 , Issue.4 , pp. 473-484
    • Balint-Kurti, P.1    Simmons, S.J.2    Blum, J.E.3    Ballare, C.L.4    Stapleton, A.E.5
  • 7
    • 78650389722 scopus 로고    scopus 로고
    • Both leaf properties and microbe-microbe interactions influence within-species variation in bacterial population diversity and structure in the lettuce (Lactuca species) phyllosphere
    • 10.1128/AEM.01321-10 20952648
    • Both leaf properties and microbe-microbe interactions influence within-species variation in bacterial population diversity and structure in the lettuce (Lactuca species) phyllosphere. Hunter PJ, Hand P, Pink D, Whipps JM, Bending GD, Appl Environ Microbiol 2010 76 24 8117 8125 10.1128/AEM.01321-10 20952648
    • (2010) Appl Environ Microbiol , vol.76 , Issue.24 , pp. 8117-8125
    • Hunter, P.J.1    Hand, P.2    Pink, D.3    Whipps, J.M.4    Bending, G.D.5
  • 9
    • 36749048735 scopus 로고    scopus 로고
    • Bacterial endophytes: Recent developments and applications
    • DOI 10.1111/j.1574-6968.2007.00918.x
    • Bacterial endophytes: recent developments and applications. Ryan RP, Germaine K, Franks A, Ryan DJ, Dowling DN, FEMS Microbiol Lett 2008 278 1 9 10.1111/j.1574-6968.2007.00918.x 18034833 (Pubitemid 350215875)
    • (2008) FEMS Microbiology Letters , vol.278 , Issue.1 , pp. 1-9
    • Ryan, R.P.1    Germaine, K.2    Franks, A.3    Ryan, D.J.4    Dowling, D.N.5
  • 11
    • 0030665873 scopus 로고    scopus 로고
    • Isolation of endophytic bacteria from rice and assessment of their potential for supplying rice with biologically fixed nitrogen
    • Isolation of endophytic bacteria from rice and assessment of their potential for supplying rice with biologically fixed nitrogen. Stoltzfus JR, So R, Malarvithi PP, Ladha JK, de Brujin FJ, Plant Soil 1998 194 1-2 25 36 (Pubitemid 27463641)
    • (1997) Plant and Soil , vol.194 , Issue.1-2 , pp. 25-36
    • Stoltzfus, J.R.1    So, R.2    Malarvithi, P.P.3    Ladha, J.K.4    De Bruijn, F.J.5
  • 12
    • 85047680365 scopus 로고    scopus 로고
    • Associations of bacterial endophyte populations from red clover and potato crops with potential for beneficial allelopathy
    • 10.1139/w97-146
    • Associations of bacterial endophyte populations from red clover and potato crops with potential for beneficial allelopathy. Sturz AV, Christie BR, Matheson BG, Can J Microbiol 1998 44 162 167 10.1139/w97-146
    • (1998) Can J Microbiol , vol.44 , pp. 162-167
    • Sturz, A.V.1    Christie, B.R.2    Matheson, B.G.3
  • 13
    • 79953742137 scopus 로고    scopus 로고
    • Culture-dependent and culture-independent assessment of bacteria in the apple phyllosphere
    • 10.1111/j.1365-2672.2011.04975.x 21332895
    • Culture-dependent and culture-independent assessment of bacteria in the apple phyllosphere. Yashiro E, Spear RN, McManus PS, J Appl Microbiol 2011 110 5 1284 1296 10.1111/j.1365-2672.2011.04975.x 21332895
    • (2011) J Appl Microbiol , vol.110 , Issue.5 , pp. 1284-1296
    • Yashiro, E.1    Spear, R.N.2    McManus, P.S.3
  • 14
    • 0034964968 scopus 로고    scopus 로고
    • The diversity of archaea and bacteria in association with the roots of Zea mays L
    • The diversity of archaea and bacteria in association with the roots of Zea mays L. Chelius MK, Triplett EW, Microbial Ecol 2001 41 252 263 (Pubitemid 32540516)
    • (2001) Microbial Ecology , vol.41 , Issue.3 , pp. 252-263
    • Chelius, M.K.1    Triplett, E.W.2
  • 15
    • 41049117454 scopus 로고    scopus 로고
    • Endophytic bacterial diversity in rice (Oryza sativa L.) roots estimated by 16S rDNA sequence analysis
    • DOI 10.1007/s00248-007-9287-1
    • Endophytic bacterial diversity in rice (Oryza sativa L.) roots estimated by 16S rDNA sequence analysis. Sun L, Qiu F, Zhang X, Dai X, Dong X, Song W, Microbial Ecol 2007 55 3 415 424 (Pubitemid 351421331)
    • (2008) Microbial Ecology , vol.55 , Issue.3 , pp. 415-424
    • Sun, L.1    Qiu, F.2    Zhang, X.3    Dai, X.4    Dong, X.5    Song, W.6
  • 16
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16 s rRNA. Liu W-T, Marsh TL, Cheng H, Forney LJ, Appl Environ Microbiol 1997 63 11 4516 4522 9361437 (Pubitemid 27485783)
    • (1997) Applied and Environmental Microbiology , vol.63 , Issue.11 , pp. 4516-4522
    • Liu, W.-T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 19
    • 63749108887 scopus 로고    scopus 로고
    • Non-cultivated plants of the Tallgrass Prairie Preserve of northeastern Oklahoma frequently contain virus-like sequences in particulate fractions
    • 10.1016/j.virusres.2008.06.016 19152821
    • Non-cultivated plants of the Tallgrass Prairie Preserve of northeastern Oklahoma frequently contain virus-like sequences in particulate fractions. Muthukumar V, Melcher U, Pierce M, Wiley GB, Roe BA, Palmer MW, Thapa V, Ali A, Ding T, Virus Res 2009 141 2 169 173 10.1016/j.virusres.2008.06.016 19152821
    • (2009) Virus Res , vol.141 , Issue.2 , pp. 169-173
    • Muthukumar, V.1    Melcher, U.2    Pierce, M.3    Wiley, G.B.4    Roe, B.A.5    Palmer, M.W.6    Thapa, V.7    Ali, A.8    Ding, T.9
  • 20
    • 77957864362 scopus 로고    scopus 로고
    • A PCR-based toolbox for the culture-independent quantification of total bacterial abundances in plant environments
    • 10.1016/j.mimet.2010.08.006 20816905
    • A PCR-based toolbox for the culture-independent quantification of total bacterial abundances in plant environments. Rastogi G, Tech JJ, Coaker GL, Leveau JHJ, J Microbiol Methods 2010 83 2 127 132 10.1016/j.mimet.2010.08.006 20816905
    • (2010) J Microbiol Methods , vol.83 , Issue.2 , pp. 127-132
    • Rastogi, G.1    Tech, J.J.2    Coaker, G.L.3    Leveau, J.H.J.4
  • 21
    • 0043031094 scopus 로고    scopus 로고
    • Fidelity of select restriction endonucleases in determining microbial diversity by terminal-restriction fragment length polymorphism
    • DOI 10.1128/AEM.69.8.4823-4829.2003
    • Fidelity of select restriction endonucleases in determining microbial diversity by terminal-restriction fragment length polymorphism. Engebretson JJ, Moyer CL, Appl Environ Microbiol 2003 69 8 4823 4829 10.1128/AEM.69.8.4823-4829. 2003 12902276 (Pubitemid 36992946)
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.8 , pp. 4823-4829
    • Engebretson, J.J.1    Moyer, C.L.2
  • 22
    • 48749098364 scopus 로고    scopus 로고
    • Analysis of T-RFLP data using analysis of variance and ordination methods: A comparative study
    • 10.1016/j.mimet.2008.04.011 18584903
    • Analysis of T-RFLP data using analysis of variance and ordination methods: a comparative study. Culman SW, Gauch HG, Blackwood CB, Thies JE, J Microbiol Methods 2008 75 1 55 63 10.1016/j.mimet.2008.04.011 18584903
    • (2008) J Microbiol Methods , vol.75 , Issue.1 , pp. 55-63
    • Culman, S.W.1    Gauch, H.G.2    Blackwood, C.B.3    Thies, J.E.4
  • 23
    • 67649610667 scopus 로고    scopus 로고
    • T-REX: Software for the processing and analysis of T-RFLP data
    • supplementary material 10.1186/1471-2105-10-171 19500385
    • T-REX: software for the processing and analysis of T-RFLP data. Culman S, Bukowski R, Gauch H, Cadillo-Quiroz H, Buckley D, BMC Bioinformatics 2009 10 1 171 supplementary material 10.1186/1471-2105-10-171 19500385
    • (2009) BMC Bioinformatics , vol.10 , Issue.1 , pp. 171
    • Culman, S.1    Bukowski, R.2    Gauch, H.3    Cadillo-Quiroz, H.4    Buckley, D.5
  • 24
    • 0034547801 scopus 로고    scopus 로고
    • An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics
    • DOI 10.1046/j.1462-2920.2000.00081.x
    • An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Osborn AM, Moore ERB, Timmis KN, Environ Microbiol 2000 2 1 39 50 10.1046/j.1462-2920.2000.00081.x 11243261 (Pubitemid 33124580)
    • (2000) Environmental Microbiology , vol.2 , Issue.1 , pp. 39-50
    • Osborn, A.M.1    Moore, E.R.B.2    Timmis, K.N.3
  • 25
  • 26
    • 80053172914 scopus 로고    scopus 로고
    • The potential of epiphytic hydrocarbon-utilizing bacteria on legume leaves for attenuation of atmospheric hydrocarbon pollutants
    • 10.1016/j.jenvman.2011.08.014 22054577
    • The potential of epiphytic hydrocarbon-utilizing bacteria on legume leaves for attenuation of atmospheric hydrocarbon pollutants. Ali N, Sorkhoh N, Salamah S, Eliyas M, Radwan S, J Environ Manage 2012 93 1 113 120 10.1016/j.jenvman.2011.08.014 22054577
    • (2012) J Environ Manage , vol.93 , Issue.1 , pp. 113-120
    • Ali, N.1    Sorkhoh, N.2    Salamah, S.3    Eliyas, M.4    Radwan, S.5
  • 27
    • 78650677462 scopus 로고    scopus 로고
    • Annual and seasonal variation in the phyllosphere bacterial community associated with leaves of the southern magnolia (Magnolia grandiflora)
    • 10.1007/s00248-010-9742-2
    • Annual and seasonal variation in the phyllosphere bacterial community associated with leaves of the southern magnolia (Magnolia grandiflora). Jackson C, Denney W, Microbial Ecol 2011 61 1 113 122 10.1007/s00248-010-9742-2
    • (2011) Microbial Ecol , vol.61 , Issue.1 , pp. 113-122
    • Jackson, C.1    Denney, W.2
  • 28
    • 83155192183 scopus 로고    scopus 로고
    • Diversity and biogeography of selected phyllosphere bacteria with special emphasis on Methylobacterium spp
    • 10.1016/j.syapm.2011.08.005 22000032
    • Diversity and biogeography of selected phyllosphere bacteria with special emphasis on Methylobacterium spp. Wellner S, Lodders N, Kampfer P, Syst Appl Microbiol 2011 34 8 621 630 10.1016/j.syapm.2011.08.005 22000032
    • (2011) Syst Appl Microbiol , vol.34 , Issue.8 , pp. 621-630
    • Wellner, S.1    Lodders, N.2    Kampfer, P.3
  • 30
    • 2142760045 scopus 로고    scopus 로고
    • Changes in developing plant microbial community structure as affected by contaminated water
    • DOI 10.1016/j.femsec.2004.01.012, PII S0168649604000509
    • Changes in developing plant microbial community structure as affected by contaminated water. Ibekwe AM, Grieve CM, FEMS Microbiol Ecol 2004 48 2 239 248 10.1016/j.femsec.2004.01.012 19712407 (Pubitemid 38553967)
    • (2004) FEMS Microbiology Ecology , vol.48 , Issue.2 , pp. 239-248
    • Ibekwe, A.M.1    Grieve, C.M.2
  • 32
    • 0033674538 scopus 로고    scopus 로고
    • Natural incidence of endophytic bacteria in pea cultivars under field conditions
    • 10.1139/w00-098 11109492
    • Natural incidence of endophytic bacteria in pea cultivars under field conditions. Elvira-Recuenco M, van Vuurde JWL, Can J Microbiol 2000 46 11 1036 1041 10.1139/w00-098 11109492
    • (2000) Can J Microbiol , vol.46 , Issue.11 , pp. 1036-1041
    • Elvira-Recuenco, M.1    Van Vuurde, J.W.L.2
  • 33
    • 38049121467 scopus 로고    scopus 로고
    • Diversity of endophytic bacterial communities in poplar grown under field conditions
    • 10.1111/j.1574-6941.2007.00419.x 18199082
    • Diversity of endophytic bacterial communities in poplar grown under field conditions. Ulrich K, Ulrich A, Ewald D, FEMS Microbiol Ecol 2008 63 169 180 10.1111/j.1574-6941.2007.00419.x 18199082
    • (2008) FEMS Microbiol Ecol , vol.63 , pp. 169-180
    • Ulrich, K.1    Ulrich, A.2    Ewald, D.3
  • 34
    • 27444441768 scopus 로고    scopus 로고
    • Influence of different Oryza cultivars on expression of nifH gene pools in roots of rice
    • DOI 10.1111/j.1462-2920.2005.00841.x
    • Influence of different Oryza cultivars on expression of nifH gene pools in roots of rice. Knauth S, Hurek T, Brar D, Reinhold-Hurek B, Environ Microbiol 2005 7 11 1725 1733 10.1111/j.1462-2920.2005.00841.x 16232287 (Pubitemid 41532382)
    • (2005) Environmental Microbiology , vol.7 , Issue.11 , pp. 1725-1733
    • Knauth, S.1    Hurek, T.2    Brar, D.3    Reinhold-Hurek, B.4
  • 35
    • 77956504985 scopus 로고    scopus 로고
    • Bacterial diversity on the surface of potato tubers in soil and the influence of the plant genotype
    • 10.1111/j.1574-6941.2010.00936.x 20698886
    • Bacterial diversity on the surface of potato tubers in soil and the influence of the plant genotype. Weinert N, Meincke R, Gottwald C, Heuer H, Schloter M, Berg G, Smalla K, FEMS Microbiol Ecol 2010 74 1 114 123 10.1111/j.1574-6941.2010.00936.x 20698886
    • (2010) FEMS Microbiol Ecol , vol.74 , Issue.1 , pp. 114-123
    • Weinert, N.1    Meincke, R.2    Gottwald, C.3    Heuer, H.4    Schloter, M.5    Berg, G.6    Smalla, K.7
  • 36
    • 77953068888 scopus 로고    scopus 로고
    • Effects of plant genotype and growth stage on the betaproteobacterial communities associated with different potato cultivars in two fields
    • 10.1128/AEM.00040-10 20363788
    • Effects of plant genotype and growth stage on the betaproteobacterial communities associated with different potato cultivars in two fields. Inceoglu O, Salles JF, van Overbeek L, van Elsas JD, Appl Environ Microbiol 2010 76 11 3675 3684 10.1128/AEM.00040-10 20363788
    • (2010) Appl Environ Microbiol , vol.76 , Issue.11 , pp. 3675-3684
    • Inceoglu, O.1    Salles, J.F.2    Van Overbeek, L.3    Van Elsas, J.D.4
  • 37
    • 77956932481 scopus 로고    scopus 로고
    • Community- and genome-based views of plant-associated bacteria: Plant-bacterial interactions in soybean and rice
    • 10.1093/pcp/pcq119 20685969
    • Community- and genome-based views of plant-associated bacteria: plant-bacterial interactions in soybean and rice. Ikeda S, Okubo T, Anda M, Nakashita H, Yasuda M, Sato S, Kaneko T, Tabata S, Eda S, Momiyama A, et al. Plant Cell Physiol 2010 51 9 1398 1410 10.1093/pcp/pcq119 20685969
    • (2010) Plant Cell Physiol , vol.51 , Issue.9 , pp. 1398-1410
    • Ikeda, S.1    Okubo, T.2    Anda, M.3    Nakashita, H.4    Yasuda, M.5    Sato, S.6    Kaneko, T.7    Tabata, S.8    Eda, S.9    Momiyama, A.10
  • 38
    • 77952672792 scopus 로고    scopus 로고
    • Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere
    • 10.1038/ismej.2010.9 20164863
    • Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere. Knief C, Ramette A, Frances L, Alonso-Blanco C, Vorholt JA, ISME J 2010 4 6 719 728 10.1038/ismej.2010.9 20164863
    • (2010) ISME J , vol.4 , Issue.6 , pp. 719-728
    • Knief, C.1    Ramette, A.2    Frances, L.3    Alonso-Blanco, C.4    Vorholt, J.A.5
  • 39
    • 79952059921 scopus 로고    scopus 로고
    • Bacterial populations on the phyllosphere of Mediterranean plants: Influence of leaf age and leaf surface
    • 10.1007/s11703-011-1068-4
    • Bacterial populations on the phyllosphere of Mediterranean plants: influence of leaf age and leaf surface. Yadav R, Karamanoli K, Vokou D, Front Agric China 2011 5 1 60 63 10.1007/s11703-011-1068-4
    • (2011) Front Agric China , vol.5 , Issue.1 , pp. 60-63
    • Yadav, R.1    Karamanoli, K.2    Vokou, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.