메뉴 건너뛰기




Volumn 36, Issue 13, 2016, Pages 1856-1867

Noncoding transcription is a driving force for nucleosome instability in spt16 mutant cells

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE II; NUCLEOSOME; SACCHAROMYCES CEREVISIAE PROTEIN; SPT16 PROTEIN, S CEREVISIAE; TRANSCRIPTION ELONGATION FACTOR;

EID: 84976443461     PISSN: 02707306     EISSN: 10985549     Source Type: Journal    
DOI: 10.1128/MCB.00152-16     Document Type: Article
Times cited : (31)

References (69)
  • 1
    • 0041669449 scopus 로고    scopus 로고
    • Chromatin assembly by DNAtranslocating motors
    • Haushalter KA, Kadonaga JT. 2003. Chromatin assembly by DNAtranslocating motors. Nat Rev Mol Cell Biol 4:613-620. http://dx.doi.org /10.1038/nrm1177.
    • (2003) Nat Rev Mol Cell Biol , vol.4 , pp. 613-620
    • Haushalter, K.A.1    Kadonaga, J.T.2
  • 2
    • 74549138158 scopus 로고    scopus 로고
    • Chaperoning histones during DNA replication and repair
    • Ransom M, Dennehey BK, Tyler JK. 2010. Chaperoning histones during DNA replication and repair. Cell 140:183-195. http://dx.doi.org/10.1016 /j.cell.2010.01.004.
    • (2010) Cell , vol.140 , pp. 183-195
    • Ransom, M.1    Dennehey, B.K.2    Tyler, J.K.3
  • 3
    • 84923782190 scopus 로고    scopus 로고
    • Histone exchange, chromatin structure and the regulation of transcription
    • Venkatesh S, Workman JL. 2015. Histone exchange, chromatin structure and the regulation of transcription. Nat Rev Mol Cell Biol 16:178-189. http://dx.doi.org/10.1038/nrm3941.
    • (2015) Nat Rev Mol Cell Biol , vol.16 , pp. 178-189
    • Venkatesh, S.1    Workman, J.L.2
  • 4
    • 33644625997 scopus 로고    scopus 로고
    • Dynamic nucleosomes
    • Luger K. 2006. Dynamic nucleosomes. Chromosome Res 14:5-16. http://dx.doi.org/10.1007/s10577-005-1026-1.
    • (2006) Chromosome Res , vol.14 , pp. 5-16
    • Luger, K.1
  • 5
    • 33847076248 scopus 로고    scopus 로고
    • Chromatin challenges during DNA replication and repair
    • Groth A, Rocha W, Verreault A, Almouzni G. 2007. Chromatin challenges during DNA replication and repair. Cell 128:721-733. http://dx.doi .org/10.1016/j.cell.2007.01.030.
    • (2007) Cell , vol.128 , pp. 721-733
    • Groth, A.1    Rocha, W.2    Verreault, A.3    Almouzni, G.4
  • 6
    • 84872051865 scopus 로고    scopus 로고
    • Histone chaperones in nucleosome assembly and human disease
    • Burgess RJ, Zhang Z. 2013. Histone chaperones in nucleosome assembly and human disease. Nat Struct Mol Biol 20:14-22. http://dx.doi.org/10 .1038/nsmb.2461.
    • (2013) Nat Struct Mol Biol , vol.20 , pp. 14-22
    • Burgess, R.J.1    Zhang, Z.2
  • 7
    • 79952536146 scopus 로고    scopus 로고
    • The double face of the histone variant H3.3
    • Szenker E, Ray-Gallet D, Almouzni G. 2011. The double face of the histone variant H3.3. Cell Res 21:421-434. http://dx.doi.org/10.1038/cr .2011.14.
    • (2011) Cell Res , vol.21 , pp. 421-434
    • Szenker, E.1    Ray-Gallet, D.2    Almouzni, G.3
  • 8
    • 77950462427 scopus 로고    scopus 로고
    • Partitioning of histone H3-H4 tetramers during DNA replication-dependent chromatin assembly
    • Xu M, Long C, Chen X, Huang C, Chen S, Zhu B. 2010. Partitioning of histone H3-H4 tetramers during DNA replication-dependent chromatin assembly. Science 328:94-98. http://dx.doi.org/10.1126/science.1178994.
    • (2010) Science , vol.328 , pp. 94-98
    • Xu, M.1    Long, C.2    Chen, X.3    Huang, C.4    Chen, S.5    Zhu, B.6
  • 10
    • 33846663256 scopus 로고    scopus 로고
    • Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication
    • Jamai A, Imoberdorf RM, Strubin M. 2007. Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication. Mol Cell 25:345-355. http://dx.doi.org/10.1016/j.molcel.2007 .01.019.
    • (2007) Mol Cell , vol.25 , pp. 345-355
    • Jamai, A.1    Imoberdorf, R.M.2    Strubin, M.3
  • 11
    • 34547277498 scopus 로고    scopus 로고
    • Genomewide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1
    • Rufiange A, Jacques PE, Bhat W, Robert F, Nourani A. 2007. Genomewide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1. Mol Cell 27:393-405. http://dx.doi.org/10.1016/j.molcel.2007.07.011.
    • (2007) Mol Cell , vol.27 , pp. 393-405
    • Rufiange, A.1    Jacques, P.E.2    Bhat, W.3    Robert, F.4    Nourani, A.5
  • 12
    • 33947137710 scopus 로고    scopus 로고
    • Dynamics of replication-independent histone turnover in budding yeast
    • Dion MF, Kaplan T, Kim M, Buratowski S, Friedman N, Rando OJ. 2007. Dynamics of replication-independent histone turnover in budding yeast. Science 315:1405-1408. http://dx.doi.org/10.1126/science.1134053.
    • (2007) Science , vol.315 , pp. 1405-1408
    • Dion, M.F.1    Kaplan, T.2    Kim, M.3    Buratowski, S.4    Friedman, N.5    Rando, O.J.6
  • 13
    • 33947098453 scopus 로고    scopus 로고
    • Histone replacement marks the boundaries of cis-regulatory domains
    • Mito Y, Henikoff JG, Henikoff S. 2007. Histone replacement marks the boundaries of cis-regulatory domains. Science 315:1408-1411. http://dx .doi.org/10.1126/science.1134004.
    • (2007) Science , vol.315 , pp. 1408-1411
    • Mito, Y.1    Henikoff, J.G.2    Henikoff, S.3
  • 14
    • 75349098018 scopus 로고    scopus 로고
    • A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome
    • Jiang C, Pugh BF. 2009. A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome. Genome Biol 10:R109. http://dx.doi.org/10.1186/gb-2009-10-10-r109.
    • (2009) Genome Biol , vol.10 , pp. R109
    • Jiang, C.1    Pugh, B.F.2
  • 15
    • 77955388311 scopus 로고    scopus 로고
    • A preoccupied position on nucleosomes
    • Pugh BF. 2010. A preoccupied position on nucleosomes. Nat Struct Mol Biol 17:923. http://dx.doi.org/10.1038/nsmb0810-923.
    • (2010) Nat Struct Mol Biol , vol.17 , pp. 923
    • Pugh, B.F.1
  • 17
    • 79956316470 scopus 로고    scopus 로고
    • A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome
    • Zhang Z, Wippo CJ, Wal M, Ward E, Korber P, Pugh BF. 2011. A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome. Science 332:977-980. http://dx.doi.org/10.1126 /science.1200508.
    • (2011) Science , vol.332 , pp. 977-980
    • Zhang, Z.1    Wippo, C.J.2    Wal, M.3    Ward, E.4    Korber, P.5    Pugh, B.F.6
  • 18
    • 84893755427 scopus 로고    scopus 로고
    • Transcription-generated torsional stress destabilizes nucleosomes
    • Teves SS, Henikoff S. 2014. Transcription-generated torsional stress destabilizes nucleosomes. Nat Struct Mol Biol 21:88-94. http://dx.doi.org /10.1038/nsmb.2723.
    • (2014) Nat Struct Mol Biol , vol.21 , pp. 88-94
    • Teves, S.S.1    Henikoff, S.2
  • 19
    • 33746856074 scopus 로고    scopus 로고
    • de FACTo nucleosome dynamics
    • Reinberg D, Sims RJ, III. 2006. de FACTo nucleosome dynamics. J Biol Chem 281:23297-23301. http://dx.doi.org/10.1074/jbc.R600007200.
    • (2006) J Biol Chem , vol.281 , pp. 23297-23301
    • Reinberg, D.1    Sims, R.J.2
  • 20
    • 68349131435 scopus 로고    scopus 로고
    • yFACT induces global accessibility of nucleosomal DNA without H2A-H2B displacement
    • Xin H, Takahata S, Blanksma M, McCullough L, Stillman DJ, Formosa T. 2009. yFACT induces global accessibility of nucleosomal DNA without H2A-H2B displacement. Mol Cell 35:365-376. http://dx.doi.org/10.1016 /j.molcel.2009.06.024.
    • (2009) Mol Cell , vol.35 , pp. 365-376
    • Xin, H.1    Takahata, S.2    Blanksma, M.3    McCullough, L.4    Stillman, D.J.5    Formosa, T.6
  • 21
    • 79955844395 scopus 로고    scopus 로고
    • The histone chaperone FACT: structural insights and mechanisms for nucleosome reorganization
    • Winkler DD, Luger K. 2011. The histone chaperone FACT: structural insights and mechanisms for nucleosome reorganization. J Biol Chem 286:18369-18374. http://dx.doi.org/10.1074/jbc.R110.180778.
    • (2011) J Biol Chem , vol.286 , pp. 18369-18374
    • Winkler, D.D.1    Luger, K.2
  • 22
    • 0025942523 scopus 로고
    • Mutations in SPT16/ CDC68 suppress cis-and trans-acting mutations that affect promoter function in Saccharomyces cerevisiae
    • Malone EA, Clark CD, Chiang A, Winston F. 1991. Mutations in SPT16/ CDC68 suppress cis-and trans-acting mutations that affect promoter function in Saccharomyces cerevisiae. Mol Cell Biol 11:5710-5717. http://dx.doi.org/10.1128/MCB.11.11.5710.
    • (1991) Mol Cell Biol , vol.11 , pp. 5710-5717
    • Malone, E.A.1    Clark, C.D.2    Chiang, A.3    Winston, F.4
  • 23
    • 68349148027 scopus 로고    scopus 로고
    • Histone chaperone Spt16 promotes redeposition of the original H3-H4 histones evicted by elongating RNA polymerase
    • Jamai A, Puglisi A, Strubin M. 2009. Histone chaperone Spt16 promotes redeposition of the original H3-H4 histones evicted by elongating RNA polymerase. Mol Cell 35:377-383. http://dx.doi.org/10.1016/j.molcel.2009.07.001.
    • (2009) Mol Cell , vol.35 , pp. 377-383
    • Jamai, A.1    Puglisi, A.2    Strubin, M.3
  • 24
    • 84878473105 scopus 로고    scopus 로고
    • A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription
    • van Bakel H, Tsui K, Gebbia M, Mnaimneh S, Hughes TR, Nislow C. 2013. A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription. PLoS Genet 9:e1003479. http://dx.doi.org/10.1371/journal.pgen.1003479.
    • (2013) PLoS Genet , vol.9
    • van Bakel, H.1    Tsui, K.2    Gebbia, M.3    Mnaimneh, S.4    Hughes, T.R.5    Nislow, C.6
  • 25
    • 84898841862 scopus 로고    scopus 로고
    • The yeast and human FACT chromatin-reorganizing complexes solve R-loop-mediated transcription-replication conflicts
    • Herrera-Moyano E, Mergui X, Garcia-Rubio ML, Barroso S, Aguilera A. 2014. The yeast and human FACT chromatin-reorganizing complexes solve R-loop-mediated transcription-replication conflicts. Genes Dev 28:735-748. http://dx.doi.org/10.1101/gad.234070.113.
    • (2014) Genes Dev , vol.28 , pp. 735-748
    • Herrera-Moyano, E.1    Mergui, X.2    Garcia-Rubio, M.L.3    Barroso, S.4    Aguilera, A.5
  • 26
    • 56849114880 scopus 로고    scopus 로고
    • Chromatin-and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome
    • Cheung V, Chua G, Batada NN, Landry CR, Michnick SW, Hughes TR, Winston F. 2008. Chromatin-and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome. PLoS Biol 6:e277. http://dx.doi.org/10.1371/journal .pbio.0060277.
    • (2008) PLoS Biol , vol.6
    • Cheung, V.1    Chua, G.2    Batada, N.N.3    Landry, C.R.4    Michnick, S.W.5    Hughes, T.R.6    Winston, F.7
  • 27
    • 84937640515 scopus 로고    scopus 로고
    • The histone chaperones FACT and Spt6 restrict H2A.Z from intragenic locations
    • Jeronimo C, Watanabe S, Kaplan CD, Peterson CL, Robert F. 2015. The histone chaperones FACT and Spt6 restrict H2A.Z from intragenic locations. Mol Cell 58:1113-1123. http://dx.doi.org/10.1016/j.molcel.2015.03.030.
    • (2015) Mol Cell , vol.58 , pp. 1113-1123
    • Jeronimo, C.1    Watanabe, S.2    Kaplan, C.D.3    Peterson, C.L.4    Robert, F.5
  • 28
    • 47549092547 scopus 로고    scopus 로고
    • Acetylation of histone H3 lysine 56 regulates replicationcoupled nucleosome assembly
    • Li Q, Zhou H, Wurtele H, Davies B, Horazdovsky B, Verreault A, Zhang Z. 2008. Acetylation of histone H3 lysine 56 regulates replicationcoupled nucleosome assembly. Cell 134:244-255. http://dx.doi.org/10 .1016/j.cell.2008.06.018.
    • (2008) Cell , vol.134 , pp. 244-255
    • Li, Q.1    Zhou, H.2    Wurtele, H.3    Davies, B.4    Horazdovsky, B.5    Verreault, A.6    Zhang, Z.7
  • 29
    • 77954852162 scopus 로고    scopus 로고
    • Ubiquitylation of FACT by the Cullin-E3 ligase Rtt101 connects FACT to DNA replication
    • Han J, Li Q, McCullough L, Kettelkamp C, Formosa T, Zhang Z. 2010. Ubiquitylation of FACT by the Cullin-E3 ligase Rtt101 connects FACT to DNA replication. Genes Dev 24:1485-1490. http://dx.doi.org/10.1101 /gad.1887310.
    • (2010) Genes Dev , vol.24 , pp. 1485-1490
    • Han, J.1    Li, Q.2    McCullough, L.3    Kettelkamp, C.4    Formosa, T.5    Zhang, Z.6
  • 31
    • 77950962157 scopus 로고    scopus 로고
    • Conserved nucleosome positioning defines replication origins
    • Eaton ML, Galani K, Kang S, Bell SP, MacAlpine DM. 2010. Conserved nucleosome positioning defines replication origins. Genes Dev 24:748-753. http://dx.doi.org/10.1101/gad.1913210.
    • (2010) Genes Dev , vol.24 , pp. 748-753
    • Eaton, M.L.1    Galani, K.2    Kang, S.3    Bell, S.P.4    MacAlpine, D.M.5
  • 32
    • 84873351389 scopus 로고    scopus 로고
    • DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing
    • Chen K, Xi Y, Pan X, Li Z, Kaestner K, Tyler J, Dent S, He X, Li W. 2013. DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing. Genome Res 23:341-351. http://dx.doi.org/10.1101/gr .142067.112.
    • (2013) Genome Res , vol.23 , pp. 341-351
    • Chen, K.1    Xi, Y.2    Pan, X.3    Li, Z.4    Kaestner, K.5    Tyler, J.6    Dent, S.7    He, X.8    Li, W.9
  • 33
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M. 2008. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320:1344-1349. http://dx.doi.org/10 .1126/science.1158441.
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1    Wang, Z.2    Waern, K.3    Shou, C.4    Raha, D.5    Gerstein, M.6    Snyder, M.7
  • 34
    • 0025362399 scopus 로고
    • A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae
    • Schmitt ME, Brown TA, Trumpower BL. 1990. A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucleic Acids Res 18:3091-3092. http://dx.doi.org/10.1093/nar/18.10.3091.
    • (1990) Nucleic Acids Res , vol.18 , pp. 3091-3092
    • Schmitt, M.E.1    Brown, T.A.2    Trumpower, B.L.3
  • 35
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25:1105-1111. http://dx.doi.org /10.1093/bioinformatics/btp120.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 36
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. 2010. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28:511-515. http://dx.doi.org/10.1038/nbt.1621.
    • (2010) Nat Biotechnol , vol.28 , pp. 511-515
    • Trapnell, C.1    Williams, B.A.2    Pertea, G.3    Mortazavi, A.4    Kwan, G.5    van Baren, M.J.6    Salzberg, S.L.7    Wold, B.J.8    Pachter, L.9
  • 37
    • 84866127830 scopus 로고    scopus 로고
    • Identifying ChIP-seq enrichment using MACS
    • Feng J, Liu T, Qin B, Zhang Y, Liu XS. 2012. Identifying ChIP-seq enrichment using MACS. Nat Protoc 7:1728-1740. http://dx.doi.org/10 .1038/nprot.2012.101.
    • (2012) Nat Protoc , vol.7 , pp. 1728-1740
    • Feng, J.1    Liu, T.2    Qin, B.3    Zhang, Y.4    Liu, X.S.5
  • 40
    • 74949110964 scopus 로고    scopus 로고
    • High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
    • Weiner A, Hughes A, Yassour M, Rando OJ, Friedman N. 2010. High-resolution nucleosome mapping reveals transcription-dependent promoter packaging. Genome Res 20:90-100. http://dx.doi.org/10.1101 /gr.098509.109.
    • (2010) Genome Res , vol.20 , pp. 90-100
    • Weiner, A.1    Hughes, A.2    Yassour, M.3    Rando, O.J.4    Friedman, N.5
  • 41
    • 84874764239 scopus 로고    scopus 로고
    • ISWI and CHD chromatin remodelers bind promoters but act in gene bodies
    • Zentner GE, Tsukiyama T, Henikoff S. 2013. ISWI and CHD chromatin remodelers bind promoters but act in gene bodies. PLoS Genet 9:e1003317. http://dx.doi.org/10.1371/journal.pgen.1003317.
    • (2013) PLoS Genet , vol.9
    • Zentner, G.E.1    Tsukiyama, T.2    Henikoff, S.3
  • 42
    • 80455140227 scopus 로고    scopus 로고
    • Splitting the task: Ubp8 and Ubp10 deubiquitinate different cellular pools of H2BK123
    • Schulze JM, Hentrich T, Nakanishi S, Gupta A, Emberly E, Shilatifard A, Kobor MS. 2011. Splitting the task: Ubp8 and Ubp10 deubiquitinate different cellular pools of H2BK123. Genes Dev 25:2242-2247. http://dx .doi.org/10.1101/gad.177220.111.
    • (2011) Genes Dev , vol.25 , pp. 2242-2247
    • Schulze, J.M.1    Hentrich, T.2    Nakanishi, S.3    Gupta, A.4    Emberly, E.5    Shilatifard, A.6    Kobor, M.S.7
  • 44
    • 80455162312 scopus 로고    scopus 로고
    • Genome-wide function of H2B ubiquitylation in promoter and genic regions
    • Batta K, Zhang Z, Yen K, Goffman DB, Pugh BF. 2011. Genome-wide function of H2B ubiquitylation in promoter and genic regions. Genes Dev 25:2254-2265. http://dx.doi.org/10.1101/gad.177238.111.
    • (2011) Genes Dev , vol.25 , pp. 2254-2265
    • Batta, K.1    Zhang, Z.2    Yen, K.3    Goffman, D.B.4    Pugh, B.F.5
  • 45
    • 33646691283 scopus 로고    scopus 로고
    • Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II
    • Pavri R, Zhu B, Li G, Trojer P, Mandal S, Shilatifard A, Reinberg D. 2006. Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II. Cell 125:703-717. http://dx.doi.org/10.1016/j.cell.2006.04.029.
    • (2006) Cell , vol.125 , pp. 703-717
    • Pavri, R.1    Zhu, B.2    Li, G.3    Trojer, P.4    Mandal, S.5    Shilatifard, A.6    Reinberg, D.7
  • 46
    • 20444368818 scopus 로고    scopus 로고
    • RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
    • LaCava J, Houseley J, Saveanu C, Petfalski E, Thompson E, Jacquier A, Tollervey D. 2005. RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 121:713-724. http://dx.doi.org/10 .1016/j.cell.2005.04.029.
    • (2005) Cell , vol.121 , pp. 713-724
    • LaCava, J.1    Houseley, J.2    Saveanu, C.3    Petfalski, E.4    Thompson, E.5    Jacquier, A.6    Tollervey, D.7
  • 49
    • 0035104956 scopus 로고    scopus 로고
    • Nhp6, an HMG1 protein, functions in SNR6 transcription by RNA polymerase III in S cerevisiae.
    • Kruppa M, Moir RD, Kolodrubetz D, Willis IM. 2001. Nhp6, an HMG1 protein, functions in SNR6 transcription by RNA polymerase III in S. cerevisiae. Mol Cell 7:309-318. http://dx.doi.org/10.1016 /S1097-2765(01)00179-4.
    • (2001) Mol Cell , vol.7 , pp. 309-318
    • Kruppa, M.1    Moir, R.D.2    Kolodrubetz, D.3    Willis, I.M.4
  • 50
    • 0035796454 scopus 로고    scopus 로고
    • Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome-binding factor SPN
    • Formosa T, Eriksson P, Wittmeyer J, Ginn J, Yu Y, Stillman DJ. 2001. Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome-binding factor SPN. EMBO J 20:3506-3517. http://dx.doi.org/10 .1093/emboj/20.13.3506.
    • (2001) EMBO J , vol.20 , pp. 3506-3517
    • Formosa, T.1    Eriksson, P.2    Wittmeyer, J.3    Ginn, J.4    Yu, Y.5    Stillman, D.J.6
  • 51
    • 84872398729 scopus 로고    scopus 로고
    • Transcription-associated histone modifications and cryptic transcription
    • Smolle M, Workman JL. 2013. Transcription-associated histone modifications and cryptic transcription. Biochim Biophys Acta 1829:84-97. http://dx.doi.org/10.1016/j.bbagrm.2012.08.008.
    • (2013) Biochim Biophys Acta , vol.1829 , pp. 84-97
    • Smolle, M.1    Workman, J.L.2
  • 52
    • 0041828953 scopus 로고    scopus 로고
    • Transcription elongation factors repress transcription initiation from cryptic sites
    • Kaplan CD, Laprade L, Winston F. 2003. Transcription elongation factors repress transcription initiation from cryptic sites. Science 301:1096-1099. http://dx.doi.org/10.1126/science.1087374.
    • (2003) Science , vol.301 , pp. 1096-1099
    • Kaplan, C.D.1    Laprade, L.2    Winston, F.3
  • 53
    • 60549114880 scopus 로고    scopus 로고
    • Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
    • Neil H, Malabat C, d'Aubenton-Carafa Y, Xu Z, Steinmetz LM, Jacquier A. 2009. Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature 457:1038-1042. http://dx.doi.org/10 .1038/nature07747.
    • (2009) Nature , vol.457 , pp. 1038-1042
    • Neil, H.1    Malabat, C.2    d'Aubenton-Carafa, Y.3    Xu, Z.4    Steinmetz, L.M.5    Jacquier, A.6
  • 54
    • 57849109058 scopus 로고    scopus 로고
    • Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
    • Core LJ, Waterfall JJ, Lis JT. 2008. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322:1845-1848. http://dx.doi.org/10.1126/science.1162228.
    • (2008) Science , vol.322 , pp. 1845-1848
    • Core, L.J.1    Waterfall, J.J.2    Lis, J.T.3
  • 56
    • 84897446230 scopus 로고    scopus 로고
    • Enhancer RNAs and regulated transcriptional programs
    • Lam MT, Li W, Rosenfeld MG, Glass CK. 2014. Enhancer RNAs and regulated transcriptional programs. Trends Biochem Sci 39:170-182. http://dx.doi.org/10.1016/j.tibs.2014.02.007.
    • (2014) Trends Biochem Sci , vol.39 , pp. 170-182
    • Lam, M.T.1    Li, W.2    Rosenfeld, M.G.3    Glass, C.K.4
  • 57
    • 84870182699 scopus 로고    scopus 로고
    • Noncoding transcription at enhancers: general principles and functional models
    • Natoli G, Andrau JC. 2012. Noncoding transcription at enhancers: general principles and functional models. Annu Rev Genet 46:1-19. http://dx .doi.org/10.1146/annurev-genet-110711-155459.
    • (2012) Annu Rev Genet , vol.46 , pp. 1-19
    • Natoli, G.1    Andrau, J.C.2
  • 59
    • 37249077649 scopus 로고    scopus 로고
    • Chromatin remodelling at promoters suppresses antisense transcription
    • Whitehouse I, Rando OJ, Delrow J, Tsukiyama T. 2007. Chromatin remodelling at promoters suppresses antisense transcription. Nature 450:1031-1035. http://dx.doi.org/10.1038/nature06391.
    • (2007) Nature , vol.450 , pp. 1031-1035
    • Whitehouse, I.1    Rando, O.J.2    Delrow, J.3    Tsukiyama, T.4
  • 61
    • 84864059329 scopus 로고    scopus 로고
    • In vivo effects of histone H3 depletion on nucleosome occupancy and position in Saccharomyces cerevisiae
    • Gossett AJ, Lieb JD. 2012. In vivo effects of histone H3 depletion on nucleosome occupancy and position in Saccharomyces cerevisiae. PLoS Genet 8:e1002771. http://dx.doi.org/10.1371/journal.pgen.1002771.
    • (2012) PLoS Genet , vol.8
    • Gossett, A.J.1    Lieb, J.D.2
  • 62
    • 84870575288 scopus 로고    scopus 로고
    • Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu-and heterochromatin
    • Shim YS, Choi Y, Kang K, Cho K, Oh S, Lee J, Grewal SI, Lee D. 2012. Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu-and heterochromatin. EMBO J 31:4375-4387. http://dx.doi .org/10.1038/emboj.2012.267.
    • (2012) EMBO J , vol.31 , pp. 4375-4387
    • Shim, Y.S.1    Choi, Y.2    Kang, K.3    Cho, K.4    Oh, S.5    Lee, J.6    Grewal, S.I.7    Lee, D.8
  • 63
    • 84868679486 scopus 로고    scopus 로고
    • Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription
    • Hennig BP, Bendrin K, Zhou Y, Fischer T. 2012. Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription. EMBO Rep 13:997-1003. http://dx.doi.org/10.1038/embor .2012.146.
    • (2012) EMBO Rep , vol.13 , pp. 997-1003
    • Hennig, B.P.1    Bendrin, K.2    Zhou, Y.3    Fischer, T.4
  • 65
    • 84893040276 scopus 로고    scopus 로고
    • Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast
    • DeGennaro CM, Alver BH, Marguerat S, Stepanova E, Davis CP, Bahler J, Park PJ, Winston F. 2013. Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast. Mol Cell Biol 33:4779-4792. http://dx.doi.org /10.1128/MCB.01068-13.
    • (2013) Mol Cell Biol , vol.33 , pp. 4779-4792
    • DeGennaro, C.M.1    Alver, B.H.2    Marguerat, S.3    Stepanova, E.4    Davis, C.P.5    Bahler, J.6    Park, P.J.7    Winston, F.8
  • 66
    • 63349106578 scopus 로고    scopus 로고
    • The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency
    • Lickwar CR, Rao B, Shabalin AA, Nobel AB, Strahl BD, Lieb JD. 2009. The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency. PLoS One 4:e4886. http://dx .doi.org/10.1371/journal.pone.0004886.
    • (2009) PLoS One , vol.4
    • Lickwar, C.R.1    Rao, B.2    Shabalin, A.A.3    Nobel, A.B.4    Strahl, B.D.5    Lieb, J.D.6
  • 69
    • 84889591723 scopus 로고    scopus 로고
    • Transcriptome surveillance by selective termination of noncoding RNA synthesis
    • Schulz D, Schwalb B, Kiesel A, Baejen C, Torkler P, Gagneur J, Soeding J, Cramer P. 2013. Transcriptome surveillance by selective termination of noncoding RNA synthesis. Cell 155:1075-1087. http://dx.doi.org/10.1016 /j.cell.2013.10.024.
    • (2013) Cell , vol.155 , pp. 1075-1087
    • Schulz, D.1    Schwalb, B.2    Kiesel, A.3    Baejen, C.4    Torkler, P.5    Gagneur, J.6    Soeding, J.7    Cramer, P.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.