메뉴 건너뛰기




Volumn 67, Issue 5, 2016, Pages 1519-1533

Network analysis of the metabolome and transcriptome reveals novel regulation of potato pigmentation

Author keywords

Anthocayanin; colored potato; metabolomics; RNA seq; ultrapressure liquid chromatography quadrupole time offlight mass spectrometry (UPLC Q TOF MS)

Indexed keywords

ANTHOCYANIN; MESSENGER RNA; TRANSCRIPTOME;

EID: 84974539598     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/erv549     Document Type: Article
Times cited : (181)

References (42)
  • 2
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biology 11, R106.
    • (2010) Genome Biology , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 3
    • 84866948588 scopus 로고    scopus 로고
    • Characterization of the regulatory network of BoMYB2 in controlling anthocyanin biosynthesis in purple cauliflower
    • Chiu LW, Li L. 2012. Characterization of the regulatory network of BoMYB2 in controlling anthocyanin biosynthesis in purple cauliflower. Planta 236, 1153-64.
    • (2012) Planta , vol.236 , pp. 1153-1164
    • Chiu, L.W.1    Li, L.2
  • 5
    • 84887016628 scopus 로고    scopus 로고
    • Metabolite profiling and quantification of phytochemicals in potato extracts using ultra-high-performance liquid chromatography-mass spectrometry
    • Chong ESL, McGhie TK, Heyes JA, Stowell KM. 2013. Metabolite profiling and quantification of phytochemicals in potato extracts using ultra-high-performance liquid chromatography-mass spectrometry. Journal of the Science of Food and Agriculture 93, 3801-3808.
    • (2013) Journal of the Science of Food and Agriculture , vol.93 , pp. 3801-3808
    • Chong, E.S.L.1    McGhie, T.K.2    Heyes, J.A.3    Stowell, K.M.4
  • 6
    • 79960422847 scopus 로고    scopus 로고
    • Genome sequence and analysis of the tuber crop potato
    • Consortium PGS. 2011. Genome sequence and analysis of the tuber crop potato. Nature 475, 189-195.
    • (2011) Nature , vol.475 , pp. 189-195
    • Consortium PGS1
  • 10
  • 13
    • 38149062772 scopus 로고    scopus 로고
    • Metabolomics integrated with transcriptomics: Assessing systems response to sulfur-deficiency stress
    • Hoefgen R, Nikiforova VJ. 2008. Metabolomics integrated with transcriptomics: assessing systems response to sulfur-deficiency stress. Physiologia Plantarum 132, 190-198.
    • (2008) Physiologia Plantarum , vol.132 , pp. 190-198
    • Hoefgen, R.1    Nikiforova, V.J.2
  • 14
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang DW, Sherman BT, Lempicki RA. 2008. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocols 4, 44-57.
    • (2008) Nature Protocols , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 15
    • 84860214821 scopus 로고    scopus 로고
    • Functional analysis of Antirrhinum kelloggii flavonoid 3'-hydroxylase and flavonoid 3',5'-hydroxylase genes; Critical role in flower color and evolution in the genus Antirrhinum
    • Ishiguro K, Taniguchi M, Tanaka Y. 2012. Functional analysis of Antirrhinum kelloggii flavonoid 3'-hydroxylase and flavonoid 3',5'-hydroxylase genes; critical role in flower color and evolution in the genus Antirrhinum. Journal of Plant Research 125, 451-456.
    • (2012) Journal of Plant Research , vol.125 , pp. 451-456
    • Ishiguro, K.1    Taniguchi, M.2    Tanaka, Y.3
  • 16
    • 84883310786 scopus 로고    scopus 로고
    • New insights into the regulation of anthocyanin biosynthesis in fruits
    • Jaakola L. 2013. New insights into the regulation of anthocyanin biosynthesis in fruits. Trends in Plant Science 18, 477-483.
    • (2013) Trends in Plant Science , vol.18 , pp. 477-483
    • Jaakola, L.1
  • 18
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10, R25.
    • (2009) Genome Biology , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 19
    • 31044451950 scopus 로고    scopus 로고
    • MAX1, a regulator of the flavonoid pathway, controls vegetative axillary bud outgrowth in Arabidopsis
    • Lazar G, Goodman HM. 2006. MAX1, a regulator of the flavonoid pathway, controls vegetative axillary bud outgrowth in Arabidopsis. Proceedings of the National academy of Sciences, USA 103, 472-476.
    • (2006) Proceedings of the National Academy of Sciences, USA , vol.103 , pp. 472-476
    • Lazar, G.1    Goodman, H.M.2
  • 20
    • 79959189248 scopus 로고    scopus 로고
    • LC-PDA-ESI/MSn identification of new anthocyanins in purple Bordeaux radish (Raphanus sativus L. Variety)
    • Lin L-Z, Sun J, Chen P, Harnly JA. 2011. LC-PDA-ESI/MSn identification of new anthocyanins in purple Bordeaux radish (Raphanus sativus L. variety). Journal of Agricultural and Food Chemistry 59, 6616-6627.
    • (2011) Journal of Agricultural and Food Chemistry , vol.59 , pp. 6616-6627
    • Lin, L.-Z.1    Sun, J.2    Chen, P.3    Harnly, J.A.4
  • 21
    • 84936860025 scopus 로고    scopus 로고
    • Comparative transcriptome analysis of white and purple potato to identify genes involved in anthocyanin biosynthesis
    • Liu Y, Lin-Wang K, Deng C, et al. 2015. Comparative transcriptome analysis of white and purple potato to identify genes involved in anthocyanin biosynthesis. PLoS One 10, e0129148.
    • (2015) PLoS One , vol.10 , pp. e0129148
    • Liu, Y.1    Lin-Wang, K.2    Deng, C.3
  • 22
    • 84896405609 scopus 로고    scopus 로고
    • Regulation of anthocyanin biosynthesis in Arabidopsis thaliana red pap1-D cells metabolically programmed by auxins
    • Liu Z, Shi M-Z, Xie D-Y. 2014. Regulation of anthocyanin biosynthesis in Arabidopsis thaliana red pap1-D cells metabolically programmed by auxins. Planta 239, 765-781.
    • (2014) Planta , vol.239 , pp. 765-781
    • Liu, Z.1    Shi, M.-Z.2    Xie, D.-Y.3
  • 23
    • 84928751656 scopus 로고    scopus 로고
    • The state of the art in biosynthesis of anthocyanins and its regulation in pigmented sweet oranges [(Citrus sinensis) L. Osbeck]
    • Lo Piero AR. 2015. The state of the art in biosynthesis of anthocyanins and its regulation in pigmented sweet oranges [(Citrus sinensis) L. Osbeck]. Journal of Agricultural and Food Chemistry 63, 4031-4041.
    • (2015) Journal of Agricultural and Food Chemistry , vol.63 , pp. 4031-4041
    • Lo Piero, A.R.1
  • 24
    • 63549110574 scopus 로고    scopus 로고
    • Gene and metabolite regulatory network analysis of early developing fruit tissues highlights new candidate genes for the control of tomato fruit composition and development
    • Mounet F, Moing A, Garcia V, Petit J, Maucourt M, Deborde C, Bernillon S, Le Gall G, Colquhoun I, Defernez M. 2009. Gene and metabolite regulatory network analysis of early developing fruit tissues highlights new candidate genes for the control of tomato fruit composition and development. Plant Physiology 149, 1505-1528.
    • (2009) Plant Physiology , vol.149 , pp. 1505-1528
    • Mounet, F.1    Moing, A.2    Garcia, V.3    Petit, J.4    Maucourt, M.5    Deborde, C.6    Bernillon, S.7    Le Gall, G.8    Colquhoun, I.9    Defernez, M.10
  • 25
    • 84887530451 scopus 로고    scopus 로고
    • A new potato cultivar "Hongyoung", with red skin and flesh color, and high concentrations of anthocyanins
    • Park Y, Cho J, Cho H, Yi J, Seo H, Choung M. 2009a. A new potato cultivar "Hongyoung", with red skin and flesh color, and high concentrations of anthocyanins. Korean Journal of Breeding Science 41, 502-506.
    • (2009) Korean Journal of Breeding Science , vol.41 , pp. 502-506
    • Park, Y.1    Cho, J.2    Cho, H.3    Yi, J.4    Seo, H.5    Choung, M.6
  • 27
    • 84858764020 scopus 로고    scopus 로고
    • Meta-analysis of untargeted metabolomic data from multiple profiling experiments
    • Patti GJ, Tautenhahn R, Siuzdak G. 2012. Meta-analysis of untargeted metabolomic data from multiple profiling experiments. Nature Protocols 7, 508-516.
    • (2012) Nature Protocols , vol.7 , pp. 508-516
    • Patti, G.J.1    Tautenhahn, R.2    Siuzdak, G.3
  • 29
    • 79959812762 scopus 로고    scopus 로고
    • The Jasmonate-ZIM-domain proteins interact with the WD-repeat/bHLH/MYB complexes to regulate jasmonate-mediated anthocyanin accumulation and trichome initiation in Arabidopsis thaliana
    • Qi T, Song S, Ren Q, Wu D, Huang H, Chen Y, Fan M, Peng W, Ren C, Xie D. 2011. The Jasmonate-ZIM-domain proteins interact with the WD-repeat/bHLH/MYB complexes to regulate jasmonate-mediated anthocyanin accumulation and trichome initiation in Arabidopsis thaliana. The Plant Cell Online 23, 1795-1814.
    • (2011) The Plant Cell Online , vol.23 , pp. 1795-1814
    • Qi, T.1    Song, S.2    Ren, Q.3    Wu, D.4    Huang, H.5    Chen, Y.6    Fan, M.7    Peng, W.8    Ren, C.9    Xie, D.10
  • 30
    • 84886377409 scopus 로고    scopus 로고
    • Modified bimolecular fluorescence complementation assay to study the inhibition of transcription complex formation by JAZ proteins
    • Qi T, Song S, Xie D. 2013. Modified bimolecular fluorescence complementation assay to study the inhibition of transcription complex formation by JAZ proteins. Methods in Molecular Biology 1011, 187-197.
    • (2013) Methods in Molecular Biology , vol.1011 , pp. 187-197
    • Qi, T.1    Song, S.2    Xie, D.3
  • 31
    • 37849020436 scopus 로고    scopus 로고
    • Decoding genes with coexpression networks and metabolomics-'majority report by precogs'
    • Saito K, Hirai MY, Yonekura-Sakakibara K. 2008. Decoding genes with coexpression networks and metabolomics-'majority report by precogs'. Trends in Plant Science 13, 36-43.
    • (2008) Trends in Plant Science , vol.13 , pp. 36-43
    • Saito, K.1    Hirai, M.Y.2    Yonekura-Sakakibara, K.3
  • 34
    • 84859228469 scopus 로고    scopus 로고
    • Study of the mass spectrometric behaviors of anthocyanins in negative ionization mode and its applications for characterization of anthocyanins and non-anthocyanin polyphenols
    • Sun J, Lin LZ, Chen P. 2012. Study of the mass spectrometric behaviors of anthocyanins in negative ionization mode and its applications for characterization of anthocyanins and non-anthocyanin polyphenols. Rapid Communications in Mass Spectrometry 26, 1123-1133.
    • (2012) Rapid Communications in Mass Spectrometry , vol.26 , pp. 1123-1133
    • Sun, J.1    Lin, L.Z.2    Chen, P.3
  • 38
    • 33751415153 scopus 로고    scopus 로고
    • A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants
    • Wang D, Amornsiripanitch N, Dong X. 2006. A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants. PLoS Pathogens 2, e123.
    • (2006) PLoS Pathogens , vol.2 , pp. e123
    • Wang, D.1    Amornsiripanitch, N.2    Dong, X.3
  • 39
    • 84870055100 scopus 로고    scopus 로고
    • Jasmonoyl-l-isoleucine hydrolase 1 (JIH1) regulates jasmonoyl-l-isoleucine levels and attenuates plant defenses against herbivores
    • Woldemariam MG, Onkokesung N, Baldwin IT, Galis I. 2012. Jasmonoyl-l-isoleucine hydrolase 1 (JIH1) regulates jasmonoyl-l-isoleucine levels and attenuates plant defenses against herbivores. The Plant Journal 72, 758-767.
    • (2012) The Plant Journal , vol.72 , pp. 758-767
    • Woldemariam, M.G.1    Onkokesung, N.2    Baldwin, I.T.3    Galis, I.4
  • 40
    • 84887592544 scopus 로고    scopus 로고
    • Plant leaf senescence and death-regulation by multiple layers of control and implications for aging in general
    • Woo HR, Kim HJ, Nam HG, Lim PO. 2013. Plant leaf senescence and death-regulation by multiple layers of control and implications for aging in general. Journal of Cell Science 126, 4823-4833.
    • (2013) Journal of Cell Science , vol.126 , pp. 4823-4833
    • Woo, H.R.1    Kim, H.J.2    Nam, H.G.3    Lim, P.O.4
  • 41
    • 16444380862 scopus 로고    scopus 로고
    • Systematic identification and characterization of anthocyanins by HPLC-ESI-MS/MS in common foods in the United States: Fruits and berries
    • Wu X, Prior RL. 2005. Systematic identification and characterization of anthocyanins by HPLC-ESI-MS/MS in common foods in the United States: fruits and berries. Journal of Agricultural and Food Chemistry 53, 2589-2599.
    • (2005) Journal of Agricultural and Food Chemistry , vol.53 , pp. 2589-2599
    • Wu, X.1    Prior, R.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.