-
1
-
-
57049122389
-
A large genome center's improvements to the Illumina sequencing system
-
Quail MA, Kozarewa I, Smith F, Scally A, Stephens PJ, Durbin R, Swerdlow H, Turner DJ. A large genome center's improvements to the Illumina sequencing system. Nat Methods. 2008;5(12):1005-10.
-
(2008)
Nat Methods
, vol.5
, Issue.12
, pp. 1005-1010
-
-
Quail, M.A.1
Kozarewa, I.2
Smith, F.3
Scally, A.4
Stephens, P.J.5
Durbin, R.6
Swerdlow, H.7
Turner, D.J.8
-
2
-
-
63949083912
-
Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G + C)-biased genomes
-
Kozarewa I, Ning Z, Quail MA, Sanders MJ, Berriman M, Turner DJ. Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G + C)-biased genomes. Nat Methods. 2009;6(4):291-5.
-
(2009)
Nat Methods
, vol.6
, Issue.4
, pp. 291-295
-
-
Kozarewa, I.1
Ning, Z.2
Quail, M.A.3
Sanders, M.J.4
Berriman, M.5
Turner, D.J.6
-
3
-
-
84893522267
-
Library construction for next-generation sequencing: overviews and challenges
-
Head SR, Komori HK, LaMere SA, Whisenant T, Van Nieuwerburgh F, Salomon DR, Ordoukhanian P. Library construction for next-generation sequencing: overviews and challenges. Biotechniques. 2014;56(2):61-4. 66, 68, passim.
-
(2014)
Biotechniques
, vol.56
, Issue.2
, pp. 61-64
-
-
Head, S.R.1
Komori, H.K.2
LaMere, S.A.3
Whisenant, T.4
Nieuwerburgh, F.5
Salomon, D.R.6
Ordoukhanian, P.7
-
4
-
-
77952577869
-
Recent advances in DNA sequencing methods - general principles of sample preparation
-
Linnarsson S. Recent advances in DNA sequencing methods - general principles of sample preparation. Exp Cell Res. 2010;316(8):1339-43.
-
(2010)
Exp Cell Res
, vol.316
, Issue.8
, pp. 1339-1343
-
-
Linnarsson, S.1
-
5
-
-
85028165246
-
Ten years of next-generation sequencing technology
-
van Dijk EL, Auger H, Jaszczyszyn Y, Thermes C. Ten years of next-generation sequencing technology. Trends Genet. 2014;30(9):418-26.
-
(2014)
Trends Genet
, vol.30
, Issue.9
, pp. 418-426
-
-
Dijk, E.L.1
Auger, H.2
Jaszczyszyn, Y.3
Thermes, C.4
-
6
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry
-
Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell HR, et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature. 2008;456(7218):53-9.
-
(2008)
Nature
, vol.456
, Issue.7218
, pp. 53-59
-
-
Bentley, D.R.1
Balasubramanian, S.2
Swerdlow, H.P.3
Smith, G.P.4
Milton, J.5
Brown, C.G.6
Hall, K.P.7
Evers, D.J.8
Barnes, C.L.9
Bignell, H.R.10
-
7
-
-
84930323173
-
Quantitative analysis of pork and chicken products by droplet digital PCR
-
Cai Y, Li X, Lv R, Yang J, Li J, He Y, Pan L. Quantitative analysis of pork and chicken products by droplet digital PCR. Biomed Res Int. 2014;2014:810209.
-
(2014)
Biomed Res Int
, vol.2014
, pp. 810209
-
-
Cai, Y.1
Li, X.2
Lv, R.3
Yang, J.4
Li, J.5
He, Y.6
Pan, L.7
-
8
-
-
84884902737
-
Absolute quantification by droplet digital PCR versus analog real-time PCR
-
Hindson CM, Chevillet JR, Briggs HA, Gallichotte EN, Ruf IK, Hindson BJ, Vessella RL, Tewari M. Absolute quantification by droplet digital PCR versus analog real-time PCR. Nat Methods. 2013;10(10):1003-5.
-
(2013)
Nat Methods
, vol.10
, Issue.10
, pp. 1003-1005
-
-
Hindson, C.M.1
Chevillet, J.R.2
Briggs, H.A.3
Gallichotte, E.N.4
Ruf, I.K.5
Hindson, B.J.6
Vessella, R.L.7
Tewari, M.8
-
9
-
-
84917744218
-
Comparison of next-generation droplet digital PCR (ddPCR) with quantitative PCR (qPCR) for enumeration of Cryptosporidium oocysts in faecal samples
-
Yang R, Paparini A, Monis P, Ryan U. Comparison of next-generation droplet digital PCR (ddPCR) with quantitative PCR (qPCR) for enumeration of Cryptosporidium oocysts in faecal samples. Int J Parasitol. 2014;44(14):1105-13.
-
(2014)
Int J Parasitol
, vol.44
, Issue.14
, pp. 1105-1113
-
-
Yang, R.1
Paparini, A.2
Monis, P.3
Ryan, U.4
-
10
-
-
81255175501
-
High-throughput droplet digital PCR system for absolute quantitation of DNA copy number
-
Hindson BJ, Ness KD, Masquelier DA, Belgrader P, Heredia NJ, Makarewicz AJ, Bright IJ, Lucero MY, Hiddessen AL, Legler TC, et al. High-throughput droplet digital PCR system for absolute quantitation of DNA copy number. Anal Chem. 2011;83(22):8604-10.
-
(2011)
Anal Chem
, vol.83
, Issue.22
, pp. 8604-8610
-
-
Hindson, B.J.1
Ness, K.D.2
Masquelier, D.A.3
Belgrader, P.4
Heredia, N.J.5
Makarewicz, A.J.6
Bright, I.J.7
Lucero, M.Y.8
Hiddessen, A.L.9
Legler, T.C.10
-
11
-
-
84881486404
-
Simultaneous digital quantification and fluorescence-based size characterization of massively parallel sequencing libraries
-
Laurie MT, Bertout JA, Taylor SD, Burton JN, Shendure JA, Bielas JH. Simultaneous digital quantification and fluorescence-based size characterization of massively parallel sequencing libraries. Biotechniques. 2013;55(2):61-7.
-
(2013)
Biotechniques
, vol.55
, Issue.2
, pp. 61-67
-
-
Laurie, M.T.1
Bertout, J.A.2
Taylor, S.D.3
Burton, J.N.4
Shendure, J.A.5
Bielas, J.H.6
-
12
-
-
84940650290
-
Optimization of Droplet Digital PCR from RNA and DNA extracts with direct comparison to RT-qPCR: Clinical implications for quantification of Oseltamivir-resistant subpopulations
-
Taylor SC, Carbonneau J, Shelton DN, Boivin G. Optimization of Droplet Digital PCR from RNA and DNA extracts with direct comparison to RT-qPCR: Clinical implications for quantification of Oseltamivir-resistant subpopulations. J Virol Methods. 2015;224:58-66.
-
(2015)
J Virol Methods
, vol.224
, pp. 58-66
-
-
Taylor, S.C.1
Carbonneau, J.2
Shelton, D.N.3
Boivin, G.4
-
13
-
-
79951694175
-
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
-
Aird D, Ross MG, Chen WS, Danielsson M, Fennell T, Russ C, Jaffe DB, Nusbaum C, Gnirke A. Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol. 2011;12(2):R18.
-
(2011)
Genome Biol
, vol.12
, Issue.2
, pp. R18
-
-
Aird, D.1
Ross, M.G.2
Chen, W.S.3
Danielsson, M.4
Fennell, T.5
Russ, C.6
Jaffe, D.B.7
Nusbaum, C.8
Gnirke, A.9
-
14
-
-
84878774401
-
DNA qualification workflow for next generation sequencing of histopathological samples
-
e62692
-
Simbolo M, Gottardi M, Corbo V, Fassan M, Mafficini A, Malpeli G, Lawlor RT, Scarpa A. DNA qualification workflow for next generation sequencing of histopathological samples. PLoS One. 2013;8(6):e62692.
-
(2013)
PLoS One
, vol.8
, Issue.6
-
-
Simbolo, M.1
Gottardi, M.2
Corbo, V.3
Fassan, M.4
Mafficini, A.5
Malpeli, G.6
Lawlor, R.T.7
Scarpa, A.8
-
15
-
-
84893688763
-
SASI-Seq: sample assurance Spike-Ins, and highly differentiating 384 barcoding for Illumina sequencing
-
Quail MA, Smith M, Jackson D, Leonard S, Skelly T, Swerdlow HP, Gu Y, Ellis P. SASI-Seq: sample assurance Spike-Ins, and highly differentiating 384 barcoding for Illumina sequencing. BMC Genomics. 2014;15(1):110.
-
(2014)
BMC Genomics
, vol.15
, Issue.1
, pp. 110
-
-
Quail, M.A.1
Smith, M.2
Jackson, D.3
Leonard, S.4
Skelly, T.5
Swerdlow, H.P.6
Gu, Y.7
Ellis, P.8
-
16
-
-
0028820187
-
Solid-phase reversible immobilization for the isolation of PCR products
-
DeAngelis MM, Wang DG, Hawkins TL. Solid-phase reversible immobilization for the isolation of PCR products. Nucleic Acids Res. 1995;23(22):4742-3.
-
(1995)
Nucleic Acids Res
, vol.23
, Issue.22
, pp. 4742-4743
-
-
DeAngelis, M.M.1
Wang, D.G.2
Hawkins, T.L.3
-
17
-
-
78650762588
-
A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries
-
Fisher S, Barry A, Abreu J, Minie B, Nolan J, Delorey TM, Young G, Fennell TJ, Allen A, Ambrogio L, et al. A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries. Genome Biol. 2011;12(1):R1.
-
(2011)
Genome Biol
, vol.12
, Issue.1
, pp. R1
-
-
Fisher, S.1
Barry, A.2
Abreu, J.3
Minie, B.4
Nolan, J.5
Delorey, T.M.6
Young, G.7
Fennell, T.J.8
Allen, A.9
Ambrogio, L.10
-
18
-
-
82355193803
-
Systematic comparison of three methods for fragmentation of long-range PCR products for next generation sequencing
-
e28240
-
Knierim E, Lucke B, Schwarz JM, Schuelke M, Seelow D. Systematic comparison of three methods for fragmentation of long-range PCR products for next generation sequencing. PLoS One. 2011;6(11):e28240.
-
(2011)
PLoS One
, vol.6
, Issue.11
-
-
Knierim, E.1
Lucke, B.2
Schwarz, J.M.3
Schuelke, M.4
Seelow, D.5
-
19
-
-
83055180102
-
Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA
-
Marine R, Polson SW, Ravel J, Hatfull G, Russell D, Sullivan M, Syed F, Dumas M, Wommack KE. Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA. Appl Environ Microbiol. 2011;77(22):8071-9.
-
(2011)
Appl Environ Microbiol
, vol.77
, Issue.22
, pp. 8071-8079
-
-
Marine, R.1
Polson, S.W.2
Ravel, J.3
Hatfull, G.4
Russell, D.5
Sullivan, M.6
Syed, F.7
Dumas, M.8
Wommack, K.E.9
-
21
-
-
52649157765
-
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
-
e105
-
Dohm JC, Lottaz C, Borodina T, Himmelbauer H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res. 2008;36(16):e105.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.16
-
-
Dohm, J.C.1
Lottaz, C.2
Borodina, T.3
Himmelbauer, H.4
-
22
-
-
84856448155
-
Optimal enzymes for amplifying sequencing libraries
-
Quail MA, Otto TD, Gu Y, Harris SR, Skelly TF, McQuillan JA, Swerdlow HP, Oyola SO. Optimal enzymes for amplifying sequencing libraries. Nat Meth. 2012;9(1):10-1.
-
(2012)
Nat Meth
, vol.9
, Issue.1
, pp. 10-11
-
-
Quail, M.A.1
Otto, T.D.2
Gu, Y.3
Harris, S.R.4
Skelly, T.F.5
McQuillan, J.A.6
Swerdlow, H.P.7
Oyola, S.O.8
-
23
-
-
84857271408
-
Length and GC-biases during sequencing library amplification: a comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries
-
Dabney J, Meyer M. Length and GC-biases during sequencing library amplification: a comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries. Biotechniques. 2012;52(2):87-94.
-
(2012)
Biotechniques
, vol.52
, Issue.2
, pp. 87-94
-
-
Dabney, J.1
Meyer, M.2
-
24
-
-
84855219212
-
Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes
-
Oyola SO, Otto TD, Gu Y, Maslen G, Manske M, Campino S, Turner DJ, MacInnis B, Kwiatkowski DP, Swerdlow HP, et al. Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes. BMC Genomics. 2012;13.
-
(2012)
BMC Genomics.
, pp. 13
-
-
Oyola, S.O.1
Otto, T.D.2
Gu, Y.3
Maslen, G.4
Manske, M.5
Campino, S.6
Turner, D.J.7
MacInnis, B.8
Kwiatkowski, D.P.9
Swerdlow, H.P.10
-
25
-
-
0037689381
-
Complete sequence and comparative analysis of the genome of herpes B virus (Cercopithecine herpesvirus 1) from a rhesus monkey
-
Perelygina L, Zhu L, Zurkuhlen H, Mills R, Borodovsky M, Hilliard JK. Complete sequence and comparative analysis of the genome of herpes B virus (Cercopithecine herpesvirus 1) from a rhesus monkey. J Virol. 2003;77(11):6167-77.
-
(2003)
J Virol
, vol.77
, Issue.11
, pp. 6167-6177
-
-
Perelygina, L.1
Zhu, L.2
Zurkuhlen, H.3
Mills, R.4
Borodovsky, M.5
Hilliard, J.K.6
-
26
-
-
84978094807
-
A novel, single-tube enzymatic fragmentation and library construction method enables fast turnaround times and improved data quality for microbial whole-genome sequencing
-
APP109001(1.15):10.
-
Miller BE, van Kets V, van Rooyen B, Whitehorn H, Jones P, Ranik M, Geldart A, van der Walt E, Appel M: A novel, single-tube enzymatic fragmentation and library construction method enables fast turnaround times and improved data quality for microbial whole-genome sequencing. KAPABiosystem 2015, APP109001(1.15):10.
-
(2015)
KAPABiosystem
-
-
Miller, B.E.1
van Kets, V.2
van Rooyen, B.3
Whitehorn, H.4
Jones, P.5
Ranik, M.6
Geldart, A.7
van der Walt, E.8
Appel, M.9
-
27
-
-
84893629592
-
Ligation bias in illumina next-generation DNA libraries: implications for sequencing ancient genomes
-
e78575
-
Seguin-Orlando A, Schubert M, Clary J, Stagegaard J, Alberdi MT, Prado JL, Prieto A, Willerslev E, Orlando L. Ligation bias in illumina next-generation DNA libraries: implications for sequencing ancient genomes. PLoS One. 2013;8(10):e78575.
-
(2013)
PLoS One
, vol.8
, Issue.10
-
-
Seguin-Orlando, A.1
Schubert, M.2
Clary, J.3
Stagegaard, J.4
Alberdi, M.T.5
Prado, J.L.6
Prieto, A.7
Willerslev, E.8
Orlando, L.9
-
28
-
-
84905571226
-
Quantitative telomerase enzyme activity determination using droplet digital PCR with single cell resolution
-
e104
-
Ludlow AT, Robin JD, Sayed M, Litterst CM, Shelton DN, Shay JW, Wright WE. Quantitative telomerase enzyme activity determination using droplet digital PCR with single cell resolution. Nucleic Acids Res. 2014;42(13):e104.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.13
-
-
Ludlow, A.T.1
Robin, J.D.2
Sayed, M.3
Litterst, C.M.4
Shelton, D.N.5
Shay, J.W.6
Wright, W.E.7
-
29
-
-
84952656127
-
Droplet Digital PCR for Absolute Quantification of EML4-ALK Gene Rearrangement in Lung Adenocarcinoma
-
Wang Q, Yang X, He Y, Ma Q, Lin L, Fu P, Xiao H. Droplet Digital PCR for Absolute Quantification of EML4-ALK Gene Rearrangement in Lung Adenocarcinoma. J Mol Diagn. 2015;17(5):515-20.
-
(2015)
J Mol Diagn
, vol.17
, Issue.5
, pp. 515-520
-
-
Wang, Q.1
Yang, X.2
He, Y.3
Ma, Q.4
Lin, L.5
Fu, P.6
Xiao, H.7
-
30
-
-
84929254864
-
Droplet Digital™ PCR: Multiplex detection of kras mutations in formalin-fixed, paraffin-embedded colorectal cancer samples
-
Yang W, Shelton DN, Berman JR, Zhang B, Cooper S, Svilen T, Hefner E, Regan JF. Droplet Digital™ PCR: Multiplex detection of kras mutations in formalin-fixed, paraffin-embedded colorectal cancer samples. Biotechniques. 2015;58:2.
-
(2015)
Biotechniques
, vol.58
, pp. 2
-
-
Yang, W.1
Shelton, D.N.2
Berman, J.R.3
Zhang, B.4
Cooper, S.5
Svilen, T.6
Hefner, E.7
Regan, J.F.8
-
31
-
-
80054988291
-
1-Million droplet array with wide-field fluorescence imaging for digital PCR
-
Hatch AC, Fisher JS, Tovar AR, Hsieh AT, Lin R, Pentoney SL, Yang DL, Lee AP. 1-Million droplet array with wide-field fluorescence imaging for digital PCR. Lab Chip. 2011;11(22):3838-45.
-
(2011)
Lab Chip
, vol.11
, Issue.22
, pp. 3838-3845
-
-
Hatch, A.C.1
Fisher, J.S.2
Tovar, A.R.3
Hsieh, A.T.4
Lin, R.5
Pentoney, S.L.6
Yang, D.L.7
Lee, A.P.8
-
32
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25(14):1754-60.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
|