The functional consequences of age-related changes in microRNA expression in skeletal muscle

Biogerontology

Volumn 17, Issue 3, 2016, Pages 641-654

  Soriano Arroquia, Ana ^a   House, Louise ^a   Tregilgas, Luke ^a   Canty Laird, Elizabeth ^a   Goljanek Whysall, Katarzyna ^a  

^a UNIVERSITY OF LIVERPOOL   (United Kingdom)

Author keywords

Ageing; microRNA; Muscle; Sarcopenia; Sirt1

Indexed keywords

MICRORNA; MICRORNA 181A; SIRTUIN 1; UNCLASSIFIED DRUG;

AGE; AGING; ANIMAL EXPERIMENT; ARTICLE; CELL SIZE; CONTROLLED STUDY; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE INTERACTION; GENE LOCATION; GENE TARGETING; MALE; MOUSE; MYOTUBE; NONHUMAN; PRIORITY JOURNAL; RNA TRANSCRIPTION; SIRT1 GENE; SKELETAL MUSCLE; ANIMAL; C57BL MOUSE; GENE EXPRESSION REGULATION; METABOLISM; PATHOLOGY; SARCOPENIA;

AGING; ANIMALS; GENE EXPRESSION REGULATION; MALE; MICE; MICE, INBRED C57BL; MICRORNAS; MUSCLE, SKELETAL; SARCOPENIA;

EID: 84973375668     PISSN: 13895729     EISSN: 15736768     Source Type: Journal    
DOI: 10.1007/s10522-016-9638-8     Document Type: Article

References (50)

1. Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116:281–297
2. Brack AS, Conboy MJ, Roy S, Lee M, Kuo CJ, Keller C, Rando TA (2007) Increased Wnt signaling during aging alters muscle stem cell fate and increases fibrosis. Science 317:807–810
3. Brown DM, Goljanek-Whysall K (2015) microRNAs: modulators of the underlying pathophysiology of sarcopenia? Ageing Res Rev 24:263–273
4. Brunet A, Sweeney LB, Sturgill JF, Chua KF, Greer PL, Lin Y, Tran H, Ross SE, Mostoslavsky R, Cohen HY, Hu LS, Cheng HL, Jedrychowski MP, Gygi SP, Sinclair DA, Alt FW, Greenberg ME (2004) Stress-dependent regulation of FOXO transcription factors by the SIRT1 deacetylase. Science 303:2011–2015
5. Carlson ME, Conboy IM (2007) Loss of stem cell regenerative capacity within aged niches. Aging Cell 6:371–382
6. Carlson ME, Suetta C, Conboy MJ, Aagaard P, Mackey A, Kjaer M, Conboy I (2009) Molecular aging and rejuvenation of human muscle stem cells. EMBO Mol Med 1:381–391
7. Carvalho BS, Irizarry RA (2010) A framework for oligonucleotide microarray preprocessing. Bioinformatics 26:2363–2367
8. Carvalho CR, Brenelli SL, Silva AC, Nunes AL, Velloso LA, Saad MJ (1996) Effect of aging on insulin receptor, insulin receptor substrate-1, and phosphatidylinositol 3-kinase in liver and muscle of rats. Endocrinology 137:151–159
9. Cheung TH, Quach NL, Charville GW, Liu L, Park L, Edalati A, Yoo B, Hoang P, Rando TA (2012) Maintenance of muscle stem-cell quiescence by microRNA-489. Nature 482:524–528
10. Crist CG, Montarras D, Pallafacchina G, Rocancourt D, Cumano A, Conway SJ, Buckingham M (2009) Muscle stem cell behavior is modified by microRNA-27 regulation of Pax3 expression. Proc Natl Acad Sci 106:13383–13387
11. Deldicque L (2013) Endoplasmic reticulum stress in human skeletal muscle: any contribution to sarcopenia? Front Physiol 4:236
12. Dey BK, Gagan J, Yan Z, Dutta A (2012) miR-26a is required for skeletal muscle differentiation and regeneration in mice. Genes Dev 26:2180–2191
13. Drummond MJ, McCarthy JJ, Sinha M, Spratt HM, Volpi E, Esser KA, Rasmussen BB (2011a) Aging and microRNA expression in human skeletal muscle: a microarray and bioinformatics analysis. Physiol Genomics 43:595–603
14. Drummond MJ, McCarthy JJ, Sinha M, Spratt HM, Volpi E, Esser KA, Rasmussen BB (2011b) Aging and microRNA expression in human skeletal muscle: a microarray and bioinformatics analysis. Physiol Genomics 43(10):595–603
15. Drummond MJ, Addison O, Brunker L, Hopkins PN, McClain DA, LaStayo PC, Marcus RL (2014) Downregulation of E3 ubiquitin ligases and mitophagy-related genes in skeletal muscle of physically inactive, frail older women: a cross-sectional comparison. J Gerontol Ser A Biol Sci Med Sci 69:1040–1048
16. Friedman RC, Farh KK, Burge CB, Bartel DP (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res 19:92–105
17. Goljanek-Whysall K, Sweetman D, Abu-Elmagd M, Chapnik E, Dalmay T, Hornstein E, Munsterberg A (2011) MicroRNA regulation of the paired-box transcription factor Pax3 confers robustness to developmental timing of myogenesis. Proc Natl Acad Sci USA 108:11936–11941
18. Goljanek-Whysall K, Pais H, Rathjen T, Sweetman D, Dalmay T, Munsterberg A (2012) Regulation of multiple target genes by miR-1 and miR-206 is pivotal for C2C12 myoblast differentiation. J Cell Sci 125:3590–3600
19. Goljanek-Whysall K, Mok GF, Fahad Alrefaei A, Kennerley N, Wheeler GN, Munsterberg A (2014) myomiR-dependent switching of BAF60 variant incorporation into Brg1 chromatin remodeling complexes during embryo myogenesis. Development 141:3378–3387
20. Holly AC, Melzer D, Pilling LC, Fellows AC, Tanaka T, Ferrucci L, Harries LW (2013) Changes in splicing factor expression are associated with advancing age in man. Mech Ageing Dev 134:356–366
21. Hu Z, Wang H, Lee IH, Modi S, Wang X, Du J, Mitch WE (2010) PTEN inhibition improves muscle regeneration in mice fed a high-fat diet. Diabetes 59:1312–1320
22. Hu Z, Klein JD, Mitch WE, Zhang L, Martinez I, Wang XH (2014a) MicroRNA-29 induces cellular senescence in aging muscle through multiple signaling pathways. Aging (Albany NY) 6:160
23. Hu Z, Klein JD, Mitch WE, Zhang L, Martinez I, Wang XH (2014b) MicroRNA-29 induces cellular senescence in aging muscle through multiple signaling pathways. Aging 6:160–175
24. Jackson MJ, McArdle A (2011) Age-related changes in skeletal muscle reactive oxygen species generation and adaptive responses to reactive oxygen species. J Physiol 589:2139–2145
25. Ketley A, Warren A, Holmes E, Gering M, Aboobaker AA, Brook JD (2013) The miR-30 microRNA family targets smoothened to regulate hedgehog signalling in zebrafish early muscle development. PLoS ONE 8:e65170
26. Kim JY, Park Y-K, Lee K-P, Lee S-M, Kang T-W, Kim H-J, Dho SH, Kim S-Y, Kwon K-S (2014a) Genome-wide profiling of the microRNA-mRNA regulatory network in skeletal muscle with aging. Aging (Albany NY) 6:524
27. Kim JY, Park YK, Lee KP, Lee SM, Kang TW, Kim HJ, Dho SH, Kim SY, Kwon KS (2014b) Genome-wide profiling of the microRNA-mRNA regulatory network in skeletal muscle with aging. Aging 6:524–544
28. Lee D, Goldberg AL (2013) SIRT1 protein, by blocking the activities of transcription factors FoxO1 and FoxO3, inhibits muscle atrophy and promotes muscle growth. J Biol Chem 288:30515–30526
29. McCarthy JJ, Esser KA (2007) MicroRNA-1 and microRNA-133a expression are decreased during skeletal muscle hypertrophy. J Appl Physiol 102:306–313
30. McDonagh B, Sakellariou GK, Jackson MJ (2014) Application of redox proteomics to skeletal muscle aging and exercise. Biochem Soc Trans 42:965–970
31. Mercken EM, Majounie E, Ding J, Guo R, Kim J, Bernier M, Mattison J, Cookson MR, Gorospe M, de Cabo R (2013) Age-associated miRNA Alterations in Skeletal Muscle from Rhesus Monkeys reversed by caloric restriction. Aging (Albany NY) 5:692
32. Naguibneva I, Ameyar-Zazoua M, Polesskaya A, Ait-Si-Ali S, Groisman R, Souidi M, Cuvellier S, Harel-Bellan A (2006) The microRNA miR-181 targets the homeobox protein Hox-A11 during mammalian myoblast differentiation. Nat Cell Biol 8:278–284
33. Otto A, Macharia R, Matsakas A, Valasek P, Mankoo BS, Patel K (2010) A hypoplastic model of skeletal muscle development displaying reduced foetal myoblast cell numbers, increased oxidative myofibres and improved specific tension capacity. Dev Biol 343:51–62
34. Rasmussen BB, Fujita S, Wolfe RR, Mittendorfer B, Roy M, Rowe VL, Volpi E (2006) Insulin resistance of muscle protein metabolism in aging. FASEB J 20:768–769
35. Ritchie ME, Diyagama D, Neilson J, van Laar R, Dobrovic A, Holloway A, Smyth GK (2006) Empirical array quality weights in the analysis of microarray data. BMC Bioinform 7:261
36. Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, Smyth GK (2015) limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res 43:e47
37. Rivas DA, Lessard SJ, Rice NP, Lustgarten MS, So K, Goodyear LJ, Parnell LD, Fielding RA (2014a) Diminished skeletal muscle microRNA expression with aging is associated with attenuated muscle plasticity and inhibition of IGF-1 signaling. FASEB J 28:4133–4147
38. Rivas DA, Lessard SJ, Rice NP, Lustgarten MS, So K, Goodyear LJ, Parnell LD, Fielding RA (2014b) Diminished skeletal muscle microRNA expression with aging is associated with attenuated muscle plasticity and inhibition of IGF-1 signaling. FASEB J 28:4133–4147
39. Roberts TC, Blomberg KE, McClorey G, El Andaloussi S, Godfrey C, Betts C, Coursindel T, Gait MJ, Smith CI, Wood MJ (2012) Expression analysis in multiple muscle groups and serum reveals complexity in the microRNA transcriptome of the mdx mouse with implications for therapy. Mol Therapy 1:e39
40. Sifakis EG, Valavanis I, Papadodima O, Chatziioannou AA (2013). Identifying gender independent biomarkers responsible for human muscle aging using microarray data. In Bioinformatics and Bioengineering (BIBE), 2013 IEEE 13th International Conference oned^eds: IEEE, pp 1–5
41. Sin TK, Yung BY, Siu PM (2015) Modulation of SIRT1-Foxo1 signaling axis by resveratrol: implications in skeletal muscle aging and insulin resistance. Cell Physiol Biochem 35:541–552
42. Smyth GK (2004). Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol, 3: Article3
43. Smyth GK, Michaud J, Scott HS (2005) Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinformatics 21:2067–2075
44. Soares RJ, Cagnin S, Chemello F, Silvestrin M, Musaro A, De Pitta C, Lanfranchi G, Sandri M (2014) Involvement of microRNAs in the regulation of muscle wasting during catabolic conditions. J Biol Chem 289:21909–21925
45. Soriano-Arroquia A, McCormick R, Molloy AP, McArdle A, Goljanek-Whysall K (2016). Age-related changes in miR-143-3p:Igfbp5 interactions affect muscle regeneration. Aging cell
46. van Rooij E, Quiat D, Johnson BA, Sutherland LB, Qi X, Richardson JA, Kelm RJ Jr, Olson EN (2009a) A family of microRNAs encoded by myosin genes governs myosin expression and muscle performance. Dev Cell 17:662–673
47. Van Rooij E, Quiat D, Johnson BA, Sutherland LB, Qi X, Richardson JA, Kelm RJ, Olson EN (2009b) A family of microRNAs encoded by myosin genes governs myosin expression and muscle performance. Dev Cell 17:662–673
48. Welle S, Brooks AI, Delehanty JM, Needler N, Thornton CA (2003) Gene expression profile of aging in human muscle. Physiol Genomics 14:149–159
49. Williams AH, Valdez G, Moresi V, Qi X, McAnally J, Elliott JL, Bassel-Duby R, Sanes JR, Olson EN (2009) MicroRNA-206 delays ALS progression and promotes regeneration of neuromuscular synapses in mice. Science 326:1549–1554
50. Zacharewicz E, Della Gatta P, Reynolds J, Garnham A, Crowley T, Russell AP, Lamon S (2014) Identification of microRNAs linked to regulators of muscle protein synthesis and regeneration in young and old skeletal muscle. PLoS ONE 9:e114009